Spatafora JW

References (17)

Title : Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613 - Park_2019_Appl.Microbiol.Biotechnol_103_8145
Author(s) : Park H , Min B , Jang Y , Kim J , Lipzen A , Sharma A , Andreopoulos B , Johnson J , Riley R , Spatafora JW , Henrissat B , Kim KH , Grigoriev IV , Kim JJ , Choi IG
Ref : Applied Microbiology & Biotechnology , 103 :8145 , 2019
PubMedID: 31482283
Gene_locus related to this paper: 9agam-a0a5b1qnb8 , 9agam-a0a5b1qwq3 , 9agam-a0a5b1qh04 , 9agam-a0a5b1qyk1 , 9agam-a0a5b1qmi3 , 9agam-a0a5b1qi91 , 9agam-a0a5b1qhi2

Title : Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi - Knapp_2018_Sci.Rep_8_6321
Author(s) : Knapp DG , Nemeth JB , Barry K , Hainaut M , Henrissat B , Johnson J , Kuo A , Lim JHP , Lipzen A , Nolan M , Ohm RA , Tamas L , Grigoriev IV , Spatafora JW , Nagy LG , Kovacs GM
Ref : Sci Rep , 8 :6321 , 2018
PubMedID: 29679020
Gene_locus related to this paper: 9pleo-a0a2v1dn29 , 9helo-a0a2v1c5l1 , 9pleo-a0a2v1dti3 , 9helo-a0a2v1bts1 , 9helo-a0a2v1cbe5 , 9pleo-a0a2v1cxz2 , 9pleo-a0a2v1d1n3 , 9pleo-a0a2v1db80 , 9pleo-a0a2v1ddg5 , 9pleo-a0a2v1dij1 , 9pleo-a0a2v1dp20 , 9pleo-a0a2v1e6x2 , 9pleo-a0a2v1ee64 , 9helo-a0a2v1cbn2 , 9helo-a0a2v1b581 , 9pleo-a0a2v1e5g2 , corcc-a0a2t2nt04 , 9helo-a0a2v1buk5

Title : Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists - Martino_2018_New.Phytol_217_1213
Author(s) : Martino E , Morin E , Grelet GA , Kuo A , Kohler A , Daghino S , Barry KW , Cichocki N , Clum A , Dockter RB , Hainaut M , Kuo RC , LaButti K , Lindahl BD , Lindquist EA , Lipzen A , Khouja HR , Magnuson J , Murat C , Ohm RA , Singer SW , Spatafora JW , Wang M , Veneault-Fourrey C , Henrissat B , Grigoriev IV , Martin FM , Perotto S
Ref : New Phytol , 217 :1213 , 2018
PubMedID: 29315638
Gene_locus related to this paper: amore-a0a2t3axk4 , amore-a0a2t3avs4 , amore-a0a2t3ay04 , amore-a0a2t3aph0

Title : The genome of Xylona heveae provides a window into fungal endophytism - Gazis_2016_Fungal.Biol_120_26
Author(s) : Gazis R , Kuo A , Riley R , LaButti K , Lipzen A , Lin J , Amirebrahimi M , Hesse CN , Spatafora JW , Henrissat B , Hainaut M , Grigoriev IV , Hibbett DS
Ref : Fungal Biol , 120 :26 , 2016
PubMedID: 26693682
Gene_locus related to this paper: 9pezi-a0a165f9w1 , 9pezi-a0a165fsb2 , 9pezi-a0a165gpf2 , 9pezi-a0a164zp96 , xylht-a0a165aju9 , xylht-a0a165jye6 , xylht-a0a165jir4

Title : The genome of the truffle-parasite Tolypocladium ophioglossoides and the evolution of antifungal peptaibiotics - Quandt_2015_BMC.Genomics_16_553
Author(s) : Quandt CA , Bushley KE , Spatafora JW
Ref : BMC Genomics , 16 :553 , 2015
PubMedID: 26215153
Gene_locus related to this paper: 9hypo-a0a0l0n382 , 9hypo-a0a0l0nes2

Title : Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome - Quandt_2015_Environ.Microbiol_17_2952
Author(s) : Quandt CA , Kohler A , Hesse CN , Sharpton TJ , Martin F , Spatafora JW
Ref : Environ Microbiol , 17 :2952 , 2015
PubMedID: 25753751
Gene_locus related to this paper: 9euro-a0a232luq4 , 9euro-a0a232m127

Title : Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants - Chang_2015_Genome.Biol.Evol_7_1590
Author(s) : Chang Y , Wang S , Sekimoto S , Aerts AL , Choi C , Clum A , LaButti KM , Lindquist EA , Yee Ngan C , Ohm RA , Salamov AA , Grigoriev IV , Spatafora JW , Berbee ML
Ref : Genome Biol Evol , 7 :1590 , 2015
PubMedID: 25977457
Gene_locus related to this paper: gonpr-a0a139axi8

Title : Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae - Toome_2014_New.Phytol_202_554
Author(s) : Toome M , Ohm RA , Riley RW , James TY , Lazarus KL , Henrissat B , Albu S , Boyd A , Chow J , Clum A , Heller G , Lipzen A , Nolan M , Sandor L , Zvenigorodsky N , Grigoriev IV , Spatafora JW , Aime MC
Ref : New Phytol , 202 :554 , 2014
PubMedID: 24372469
Gene_locus related to this paper: mixos-g7dyk5 , mixos-g7eay5

Title : The genome of Eucalyptus grandis - Myburg_2014_Nature_510_356
Author(s) : Myburg AA , Grattapaglia D , Tuskan GA , Hellsten U , Hayes RD , Grimwood J , Jenkins J , Lindquist E , Tice H , Bauer D , Goodstein DM , Dubchak I , Poliakov A , Mizrachi E , Kullan AR , Hussey SG , Pinard D , van der Merwe K , Singh P , van Jaarsveld I , Silva-Junior OB , Togawa RC , Pappas MR , Faria DA , Sansaloni CP , Petroli CD , Yang X , Ranjan P , Tschaplinski TJ , Ye CY , Li T , Sterck L , Vanneste K , Murat F , Soler M , Clemente HS , Saidi N , Cassan-Wang H , Dunand C , Hefer CA , Bornberg-Bauer E , Kersting AR , Vining K , Amarasinghe V , Ranik M , Naithani S , Elser J , Boyd AE , Liston A , Spatafora JW , Dharmwardhana P , Raja R , Sullivan C , Romanel E , Alves-Ferreira M , Kulheim C , Foley W , Carocha V , Paiva J , Kudrna D , Brommonschenkel SH , Pasquali G , Byrne M , Rigault P , Tibbits J , Spokevicius A , Jones RC , Steane DA , Vaillancourt RE , Potts BM , Joubert F , Barry K , Pappas GJ , Strauss SH , Jaiswal P , Grima-Pettenati J , Salse J , Van de Peer Y , Rokhsar DS , Schmutz J
Ref : Nature , 510 :356 , 2014
PubMedID: 24919147
Gene_locus related to this paper: eucgr-a0a059d0n8 , eucgr-a0a059cm68 , eucgr-a0a059d783 , eucgr-a0a059af93 , eucgr-a0a059awi0 , eucgr-a0a059awt4 , eucgr-a0a059ar83 , eucgr-a0a059ayw5 , eucgr-a0a059az75 , eucgr-a0a059azj1 , eucgr-a0a059azq5 , eucgr-a0a059bkm2 , eucgr-a0a059bl38 , eucgr-a0a059a7m2 , eucgr-a0a059a6p6 , eucgr-a0a059a6p1 , eucgr-a0a059a5e9 , eucgr-a0a059cpq4 , eucgr-a0a059b8v5

Title : Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence - Manning_2013_G3.(Bethesda)_3_41
Author(s) : Manning VA , Pandelova I , Dhillon B , Wilhelm LJ , Goodwin SB , Berlin AM , Figueroa M , Freitag M , Hane JK , Henrissat B , Holman WH , Kodira CD , Martin J , Oliver RP , Robbertse B , Schackwitz W , Schwartz DC , Spatafora JW , Turgeon BG , Yandava C , Young S , Zhou S , Zeng Q , Grigoriev IV , Ma LJ , Ciuffetti LM
Ref : G3 (Bethesda) , 3 :41 , 2013
PubMedID: 23316438
Gene_locus related to this paper: pyrtr-b2vxe8 , pyrtr-b2vvm1 , pyrtr-b2vzr5 , pyrtr-b2vu22 , pyrtr-kex1

Title : The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction - Padamsee_2012_Fungal.Genet.Biol_49_217
Author(s) : Padamsee M , Kumar TK , Riley R , Binder M , Boyd A , Calvo AM , Furukawa K , Hesse C , Hohmann S , James TY , LaButti K , Lapidus A , Lindquist E , Lucas S , Miller K , Shantappa S , Grigoriev IV , Hibbett DS , McLaughlin DJ , Spatafora JW , Aime MC
Ref : Fungal Genet Biol , 49 :217 , 2012
PubMedID: 22326418
Gene_locus related to this paper: walsc-i4y6w1 , walmc-i4y5m3

Title : Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi - Ohm_2012_PLoS.Pathog_8_e1003037
Author(s) : Ohm RA , Feau N , Henrissat B , Schoch CL , Horwitz BA , Barry KW , Condon BJ , Copeland AC , Dhillon B , Glaser F , Hesse CN , Kosti I , LaButti K , Lindquist EA , Lucas S , Salamov AA , Bradshaw RE , Ciuffetti L , Hamelin RC , Kema GH , Lawrence C , Scott JA , Spatafora JW , Turgeon BG , de Wit PJ , Zhong S , Goodwin SB , Grigoriev IV
Ref : PLoS Pathog , 8 :e1003037 , 2012
PubMedID: 23236275
Gene_locus related to this paper: mycpj-q30dw8 , sphms-m3db71 , bauco-m2n3p9 , cocsn-m2rnc6 , coch5-m2tnl8 , coch4-n4xap8 , sett2-r0j560 , bauco-m2lw45 , cocsn-m2thl9 , bauco-m2nan7 , sphms-m3asf7 , coch5-m2v1s2 , mycfi-m3am36 , coch4-n4xzy1 , mycfi-m3b3x0 , cocsn-m2sqr3 , cocsn-m2rnk8 , mycp1-n1pnd6 , bauco-m2n7y7 , coch4-n4xdv7 , coch5-m2uds0 , coch5-m2um94 , sett2-r0i8c5 , coch4-n4wlc8 , coch4-n4x9p3 , cocsn-m2rh47 , cocsn-m2qz08 , sett2-r0jqq6 , mycfi-m2yiq2 , sett2-r0imb6 , sphms-m3b727 , coch4-n4x7u3 , cocsn-m2rv02 , cocsn-m2sy95 , coch5-m2ubd5 , mycp1-n1per0 , mycp1-n1pg49 , mycfi-n1q8u1 , mycp1-n1pwj1 , mycp1-n1pcl8 , bauco-m2n330 , cocsn-m2t3d2 , mycfi-m3b223 , sett2-r0kl84 , bauco-m2lu86 , mycfi-m3b1s8 , sett2-r0jts7 , mycfi-m3amn9 , bauco-m2nf03 , mycfi-m3a015 , sphms-n1qgv4 , coch4-n4x2h3 , mycp1-m2y2b1 , sett2-r0jxt9 , mycfi-m2zg05 , sphms-m3cr09 , coch4-n4x7r9 , mycfi-m2yip7 , mycp1-n1pwu7 , cocsn-m2sh75 , cocsn-m2t5z2 , coch5-m2ucf6 , sphms-m3c9s8 , sphms-m3c383 , mycp1-n1ppa8 , sett2-r0k664 , cocsn-m2t3q1 , sett2-r0k4b4 , cocsn-m2t4i1 , bauco-m2lzw1 , coch5-m2th93 , cocsn-m2svm8 , sphms-m3d7h2 , sphms-m3cwc3 , mycfi-m3b329 , bauco-m2n4x9 , cocsn-m2s6q4 , mycfi-m3b7x7 , mycp1-m2yk59 , cocsn-m2s5h5 , bauco-m2nfr9 , bauco-m2myk4 , coch4-n4xf94 , mycfi-m3a252 , sphms-n1qes8 , mycp1-n1pps5 , sett2-r0kdl8 , cocsn-m2qvi9 , sett2-r0kfg6 , bauco-m2n1q0 , cocsn-m2szq4 , sett2-r0j437 , coch4-n4x7j4 , mycfi-m3b4h3 , coch5-m2twk3 , coch5-m2usf2 , sett2-r0kjt7 , mycfi-m2yrk1 , bauco-m2n4g8 , sett2-r0k7y2 , cocsn-m2th03 , sett2-r0iy92 , sett2-r0kbr9 , sett2-r0k997 , coch5-m2sik6 , bauco-m2n0g0 , bauco-m2lkk0 , sett2-r0jzj5 , sphms-m3bs21 , mycfi-m3a3h8 , mycp1-n1pw13 , cocsn-m2r0j6 , mycp1-n1pe19 , coch4-n4x6a4 , mycp1-m2xhl1 , cocsn-m2s7a5 , cocsn-m2sv79 , mycfi-n1qbd7 , mycp1-n1pnh6 , sphms-m3cz62 , sett2-r0knx4 , bauco-m2nlz2 , mycp1-n1psn5 , sett2-r0ksh8 , bauco-m2n3v9 , bauco-m2n9y7 , mycp1-n1puh9 , sett2-r0ip86 , sphms-m3c6j1 , sphms-n1qnq9 , cocsn-m2sqe4 , coch4-n4xzc8 , mycfi-m3ali0 , mycfi-m3a5j4 , mycp1-n1phf7 , bauco-m2myw5 , mycp1-m2y2h4 , mycfi-m3as05 , sphms-m3ccg5 , cocsn-m2rtg8 , sphms-n1qny5 , mycfi-n1q7c3 , mycp1-n1q523 , bauco-m2m190 , psefd-m3awp8 , sphms-n1qfl1 , dotsn-n1q1b1 , sphms-m3dcu2 , bauco-m2m7v7 , psefd-m3bad8 , bauco-m2nft5 , psefd-m3b4x7 , sphms-n1qdh4 , sphms-m3cq38 , bauco-m2mz43 , coch5-m2t2x3 , cocsn-m2sze4 , sphms-n1qfm9 , sett2-r0kjg6 , sett2-r0k5q0 , cocvi-w7ezb7 , sett2-r0jtm1 , cocmi-w6ywa1 , psefd-m3a663 , baupa-m2mxl2 , cocsn-m2t3e8 , coch5-m2ulw5 , coch5-m2urw9 , sett2-r0knn5 , cocca-w6y1v2 , baupa-m2nq79 , sett2-r0i9k2 , coch5-m2uul8 , dotsn-n1q415 , psefd-n1qcy3 , cocsn-m2sl21 , baupa-m2luc8 , dotsn-est1

Title : The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes - Floudas_2012_Science_336_1715
Author(s) : Floudas D , Binder M , Riley R , Barry K , Blanchette RA , Henrissat B , Martinez AT , Otillar R , Spatafora JW , Yadav JS , Aerts A , Benoit I , Boyd A , Carlson A , Copeland A , Coutinho PM , de Vries RP , Ferreira P , Findley K , Foster B , Gaskell J , Glotzer D , Gorecki P , Heitman J , Hesse C , Hori C , Igarashi K , Jurgens JA , Kallen N , Kersten P , Kohler A , Kues U , Kumar TK , Kuo A , LaButti K , Larrondo LF , Lindquist E , Ling A , Lombard V , Lucas S , Lundell T , Martin R , McLaughlin DJ , Morgenstern I , Morin E , Murat C , Nagy LG , Nolan M , Ohm RA , Patyshakuliyeva A , Rokas A , Ruiz-Duenas FJ , Sabat G , Salamov A , Samejima M , Schmutz J , Slot JC , St John F , Stenlid J , Sun H , Sun S , Syed K , Tsang A , Wiebenga A , Young D , Pisabarro A , Eastwood DC , Martin F , Cullen D , Grigoriev IV , Hibbett DS
Ref : Science , 336 :1715 , 2012
PubMedID: 22745431
Gene_locus related to this paper: aurde-j0d098 , aurde-j0dc31 , glota-s7rlc1 , fompi-s8f7s4 , dacsp-m5fpg2 , dicsq-r7sm16 , dacsp-m5g7q5 , dacsp-m5fr12 , glota-s7q5w3 , fompi-s8f826.1 , fompi-s8f826.2 , dicsq-r7sy09 , glota-s7rt87 , dicsq-r7t032 , glota-s7rym7 , fompi-s8fiv2 , dacsp-m5gda3.2 , dicsq-r7swi6 , dacsp-m5frf2 , fompi-s8ebb6 , dicsq-r7sln3 , dicsq-r7sya6 , dacsp-m5g7g1 , dicsq-r7syx7 , dicsq-r7sx57 , dacsp-m5fps7 , glota-s7pwi7 , dicsq-r7swj6 , fompi-s8ejq6 , dicsq-r7spc3 , glota-s7q258 , dacsp-m5ft65 , glota-s7q3m7 , fompi-s8dkc7 , glota-s7q1z1 , fompi-s8eqi2 , glota-s7q1z8 , fompi-s8du50 , dacsp-m5gg33 , dacsp-m5g3a7 , fompi-s8ecd7 , fompi-s8dps1 , dacsp-m5fwr0 , dicsq-r7sub7 , glota-s7q8k9 , fompi-s8ffc3 , dacsp-m5g2f9 , fompi-s8ecc2 , dacsp-m5g868 , fompi-s8f890 , dicsq-r7t1a8 , fompi-s8ebx4 , fompi-s8eb97 , glota-s7q222 , glota-s7puf0 , fompi-s8f6v9 , dacsp-m5g0z2 , dacsp-m5gdh9 , fompi-s8fb37 , dacsp-m5fy91 , glota-s7q5v6 , fompi-s8fl44 , dicsq-r7stv9 , dicsq-r7szk3 , fompi-s8epq9 , glota-s7rh56 , dacsp-m5gbt1 , punst-r7s3x9 , punst-r7s0t5 , glota-s7q312 , glota-s7rhh6 , dicsq-r7t117 , dicsq-r7slz3

Title : Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum - Hane_2007_Plant.Cell_19_3347
Author(s) : Hane JK , Lowe RG , Solomon PS , Tan KC , Schoch CL , Spatafora JW , Crous PW , Kodira C , Birren BW , Galagan JE , Torriani SF , McDonald BA , Oliver RP
Ref : Plant Cell , 19 :3347 , 2007
PubMedID: 18024570
Gene_locus related to this paper: phano-at151 , phano-bst1 , phano-dapb , phano-q0tw42 , phano-q0txi3 , phano-q0tzh6 , phano-q0u0b1 , phano-q0u0e9 , phano-q0u0t5 , phano-q0u1e7 , phano-q0u1v1 , phano-q0u1x4 , phano-q0u2m9 , phano-q0u2y5 , phano-q0u3i1 , phano-q0u5t8 , phano-q0u8z8 , phano-q0u382 , phano-q0u622 , phano-q0u753 , phano-q0uac8 , phano-q0ucn2 , phano-q0udp4 , phano-q0udr2 , phano-q0uem1 , phano-q0uet5 , phano-q0ufs1 , phano-q0ug08 , phano-q0ugf2 , phano-q0uha0 , phano-q0ui22 , phano-q0ukj9 , phano-q0unt6 , phano-q0upq4 , phano-q0uq74 , phano-q0uq76 , phano-q0urz6 , phano-q0uua1 , phano-q0uuc4 , phano-q0uuc6 , phano-q0uup2 , phano-q0uv86 , phano-q0uwb7 , phano-q0uyc1 , phano-q0uyf1 , phano-q0uyi9 , phano-q0v0y6 , phano-q0v1c5 , phano-q0v1s1 , phano-q0v2i6 , phano-q0v4x4 , phano-q0v5x9 , phano-q0v6t6 , phano-q0v6w1 , phano-q0v7e6 , phano-q0v615 , phano-q0uru8 , phano-q0txx8 , phano-q0u4u8 , phano-q0v3l0 , phano-q0ua76 , phano-q0ty51 , phano-q0twk1 , phano-q0v263 , phano-q0uh92 , phano-q0uxx8 , phano-q0v697 , phano-q0ug10 , phano-q0v5u8 , phano-q0u1s8 , phano-q0uy34 , phano-q0twn7 , phano-elca , phano-cbpya , phano-kex1 , phano-q0v778