Title : Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613 - Park_2019_Appl.Microbiol.Biotechnol_103_8145 |
Author(s) : Park H , Min B , Jang Y , Kim J , Lipzen A , Sharma A , Andreopoulos B , Johnson J , Riley R , Spatafora JW , Henrissat B , Kim KH , Grigoriev IV , Kim JJ , Choi IG |
Ref : Applied Microbiology & Biotechnology , 103 :8145 , 2019 |
Abstract : |
PubMedSearch : Park_2019_Appl.Microbiol.Biotechnol_103_8145 |
PubMedID: 31482283 |
Gene_locus related to this paper: 9agam-a0a5b1qnb8 , 9agam-a0a5b1qwq3 , 9agam-a0a5b1qh04 , 9agam-a0a5b1qyk1 , 9agam-a0a5b1qmi3 , 9agam-a0a5b1qi91 , 9agam-a0a5b1qhi2 |
Title : Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi - Knapp_2018_Sci.Rep_8_6321 |
Author(s) : Knapp DG , Nemeth JB , Barry K , Hainaut M , Henrissat B , Johnson J , Kuo A , Lim JHP , Lipzen A , Nolan M , Ohm RA , Tamas L , Grigoriev IV , Spatafora JW , Nagy LG , Kovacs GM |
Ref : Sci Rep , 8 :6321 , 2018 |
Abstract : |
PubMedSearch : Knapp_2018_Sci.Rep_8_6321 |
PubMedID: 29679020 |
Gene_locus related to this paper: 9pleo-a0a2v1dn29 , 9helo-a0a2v1c5l1 , 9pleo-a0a2v1dti3 , 9helo-a0a2v1bts1 , 9helo-a0a2v1cbe5 , 9pleo-a0a2v1cxz2 , 9pleo-a0a2v1d1n3 , 9pleo-a0a2v1db80 , 9pleo-a0a2v1ddg5 , 9pleo-a0a2v1dij1 , 9pleo-a0a2v1dp20 , 9pleo-a0a2v1e6x2 , 9pleo-a0a2v1ee64 , 9helo-a0a2v1cbn2 , 9helo-a0a2v1b581 , 9pleo-a0a2v1e5g2 , corcc-a0a2t2nt04 , 9helo-a0a2v1buk5 |
Title : Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists - Martino_2018_New.Phytol_217_1213 |
Author(s) : Martino E , Morin E , Grelet GA , Kuo A , Kohler A , Daghino S , Barry KW , Cichocki N , Clum A , Dockter RB , Hainaut M , Kuo RC , LaButti K , Lindahl BD , Lindquist EA , Lipzen A , Khouja HR , Magnuson J , Murat C , Ohm RA , Singer SW , Spatafora JW , Wang M , Veneault-Fourrey C , Henrissat B , Grigoriev IV , Martin FM , Perotto S |
Ref : New Phytol , 217 :1213 , 2018 |
Abstract : |
PubMedSearch : Martino_2018_New.Phytol_217_1213 |
PubMedID: 29315638 |
Gene_locus related to this paper: amore-a0a2t3axk4 , amore-a0a2t3avs4 , amore-a0a2t3ay04 , amore-a0a2t3aph0 |
Title : Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle - Murat_2018_Nat.Ecol.Evol_2_1956 |
Author(s) : Murat C , Payen T , Noel B , Kuo A , Morin E , Chen J , Kohler A , Krizsan K , Balestrini R , Da Silva C , Montanini B , Hainaut M , Levati E , Barry KW , Belfiori B , Cichocki N , Clum A , Dockter RB , Fauchery L , Guy J , Iotti M , Le Tacon F , Lindquist EA , Lipzen A , Malagnac F , Mello A , Molinier V , Miyauchi S , Poulain J , Riccioni C , Rubini A , Sitrit Y , Splivallo R , Traeger S , Wang M , Zifcakova L , Wipf D , Zambonelli A , Paolocci F , Nowrousian M , Ottonello S , Baldrian P , Spatafora JW , Henrissat B , Nagy LG , Aury JM , Wincker P , Grigoriev IV , Bonfante P , Martin FM |
Ref : Nat Ecol Evol , 2 :1956 , 2018 |
Abstract : |
PubMedSearch : Murat_2018_Nat.Ecol.Evol_2_1956 |
PubMedID: 30420746 |
Gene_locus related to this paper: 9pezi-a0a3n4l4q5 , 9pezi-a0a3n4lpg7 |
Title : The genome of Xylona heveae provides a window into fungal endophytism - Gazis_2016_Fungal.Biol_120_26 |
Author(s) : Gazis R , Kuo A , Riley R , LaButti K , Lipzen A , Lin J , Amirebrahimi M , Hesse CN , Spatafora JW , Henrissat B , Hainaut M , Grigoriev IV , Hibbett DS |
Ref : Fungal Biol , 120 :26 , 2016 |
Abstract : |
PubMedSearch : Gazis_2016_Fungal.Biol_120_26 |
PubMedID: 26693682 |
Gene_locus related to this paper: 9pezi-a0a165f9w1 , 9pezi-a0a165fsb2 , 9pezi-a0a165gpf2 , 9pezi-a0a164zp96 , xylht-a0a165aju9 , xylht-a0a165jye6 , xylht-a0a165jir4 |
Title : Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants - Chang_2015_Genome.Biol.Evol_7_1590 |
Author(s) : Chang Y , Wang S , Sekimoto S , Aerts AL , Choi C , Clum A , LaButti KM , Lindquist EA , Yee Ngan C , Ohm RA , Salamov AA , Grigoriev IV , Spatafora JW , Berbee ML |
Ref : Genome Biol Evol , 7 :1590 , 2015 |
Abstract : |
PubMedSearch : Chang_2015_Genome.Biol.Evol_7_1590 |
PubMedID: 25977457 |
Gene_locus related to this paper: gonpr-a0a139axi8 |
Title : The genome of the truffle-parasite Tolypocladium ophioglossoides and the evolution of antifungal peptaibiotics - Quandt_2015_BMC.Genomics_16_553 |
Author(s) : Quandt CA , Bushley KE , Spatafora JW |
Ref : BMC Genomics , 16 :553 , 2015 |
Abstract : |
PubMedSearch : Quandt_2015_BMC.Genomics_16_553 |
PubMedID: 26215153 |
Gene_locus related to this paper: 9hypo-a0a0l0n382 , 9hypo-a0a0l0nes2 |
Title : Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome - Quandt_2015_Environ.Microbiol_17_2952 |
Author(s) : Quandt CA , Kohler A , Hesse CN , Sharpton TJ , Martin F , Spatafora JW |
Ref : Environ Microbiol , 17 :2952 , 2015 |
Abstract : |
PubMedSearch : Quandt_2015_Environ.Microbiol_17_2952 |
PubMedID: 25753751 |
Gene_locus related to this paper: 9euro-a0a232luq4 , 9euro-a0a232m127 |
Title : Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae - Toome_2014_New.Phytol_202_554 |
Author(s) : Toome M , Ohm RA , Riley RW , James TY , Lazarus KL , Henrissat B , Albu S , Boyd A , Chow J , Clum A , Heller G , Lipzen A , Nolan M , Sandor L , Zvenigorodsky N , Grigoriev IV , Spatafora JW , Aime MC |
Ref : New Phytol , 202 :554 , 2014 |
Abstract : |
PubMedSearch : Toome_2014_New.Phytol_202_554 |
PubMedID: 24372469 |
Gene_locus related to this paper: mixos-g7dyk5 , mixos-g7eay5 |
Title : Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence - Manning_2013_G3.(Bethesda)_3_41 |
Author(s) : Manning VA , Pandelova I , Dhillon B , Wilhelm LJ , Goodwin SB , Berlin AM , Figueroa M , Freitag M , Hane JK , Henrissat B , Holman WH , Kodira CD , Martin J , Oliver RP , Robbertse B , Schackwitz W , Schwartz DC , Spatafora JW , Turgeon BG , Yandava C , Young S , Zhou S , Zeng Q , Grigoriev IV , Ma LJ , Ciuffetti LM |
Ref : G3 (Bethesda) , 3 :41 , 2013 |
Abstract : |
PubMedSearch : Manning_2013_G3.(Bethesda)_3_41 |
PubMedID: 23316438 |
Gene_locus related to this paper: pyrtr-b2vxe8 , pyrtr-b2vvm1 , pyrtr-b2vzr5 , pyrtr-b2vu22 , pyrtr-kex1 |
Title : The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction - Padamsee_2012_Fungal.Genet.Biol_49_217 |
Author(s) : Padamsee M , Kumar TK , Riley R , Binder M , Boyd A , Calvo AM , Furukawa K , Hesse C , Hohmann S , James TY , LaButti K , Lapidus A , Lindquist E , Lucas S , Miller K , Shantappa S , Grigoriev IV , Hibbett DS , McLaughlin DJ , Spatafora JW , Aime MC |
Ref : Fungal Genet Biol , 49 :217 , 2012 |
Abstract : |
PubMedSearch : Padamsee_2012_Fungal.Genet.Biol_49_217 |
PubMedID: 22326418 |
Gene_locus related to this paper: walsc-i4y6w1 , walmc-i4y5m3 |