Schmutz_2010_Nature_463_178

Reference

Title : Genome sequence of the palaeopolyploid soybean - Schmutz_2010_Nature_463_178
Author(s) : Schmutz J , Cannon SB , Schlueter J , Ma J , Mitros T , Nelson W , Hyten DL , Song Q , Thelen JJ , Cheng J , Xu D , Hellsten U , May GD , Yu Y , Sakurai T , Umezawa T , Bhattacharyya MK , Sandhu D , Valliyodan B , Lindquist E , Peto M , Grant D , Shu S , Goodstein D , Barry K , Futrell-Griggs M , Abernathy B , Du J , Tian Z , Zhu L , Gill N , Joshi T , Libault M , Sethuraman A , Zhang XC , Shinozaki K , Nguyen HT , Wing RA , Cregan P , Specht J , Grimwood J , Rokhsar D , Stacey G , Shoemaker RC , Jackson SA
Ref : Nature , 463 :178 , 2010
Abstract :

Soybean (Glycine max) is one of the most important crop plants for seed protein and oil content, and for its capacity to fix atmospheric nitrogen through symbioses with soil-borne microorganisms. We sequenced the 1.1-gigabase genome by a whole-genome shotgun approach and integrated it with physical and high-density genetic maps to create a chromosome-scale draft sequence assembly. We predict 46,430 protein-coding genes, 70% more than Arabidopsis and similar to the poplar genome which, like soybean, is an ancient polyploid (palaeopolyploid). About 78% of the predicted genes occur in chromosome ends, which comprise less than one-half of the genome but account for nearly all of the genetic recombination. Genome duplications occurred at approximately 59 and 13 million years ago, resulting in a highly duplicated genome with nearly 75% of the genes present in multiple copies. The two duplication events were followed by gene diversification and loss, and numerous chromosome rearrangements. An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.

PubMedSearch : Schmutz_2010_Nature_463_178
PubMedID: 20075913
Gene_locus related to this paper: soybn-c6t4m5 , soybn-c6t4p4 , soybn-c6tav4 , soybn-c6tdf9 , soybn-c6tiz7 , soybn-c6tmg3 , soybn-i1jgq5 , soybn-i1kpj2 , soybn-i1kwe7 , soybn-i1l7e3 , soybn-i1l497 , soybn-i1ll09 , soybn-i1lpi4 , soybn-i1jcw2 , soybn-i1jcw3 , soybn-i1jcw4 , soybn-i1jcw7 , soybn-i1k217 , soybn-i1kfz3 , soybn-i1lhi0 , soybn-k7k6s4 , soybn-i1jtw1 , soybn-c6tas4 , soybn-i1m910 , soybn-c6t7k8 , soybn-i1k636 , soybn-i1kju7 , soybn-i1j4c6 , soybn-i1lbk2 , soybn-i1jqy5 , soybn-i1nbj8 , soybn-i1j855 , soybn-i1l5a3 , soybn-k7mt28 , soybn-i1lau7 , soybn-i1lay0 , soybn-i1net3 , soybn-i1jr09 , soybn-i1ms08 , soybn-i1mmh5 , soybn-i1mly5 , soybn-i1mmh3 , soybn-i1mmh4 , soybn-i1ngu7 , soybn-k7ll20 , soybn-i1mly4 , soybn-a0a0r0i9y7 , soybn-a0a0r0j241 , soybn-i1les8 , soybn-k7n313 , soybn-i1kfj1 , soybn-a0a0r0k7x4 , soybn-i1ly30 , soybn-i1mwr8 , soybn-i1kfg5 , soybn-i1kly2 , soybn-a0a0r0ixi2 , soybn-i1jew0 , glyso-a0a445l5n1 , soybn-i1kfz9 , soybn-i1jqs1 , soybn-i1nbc7 , soybn-k7mm57 , soybn-a0a0r0fec7 , soybn-a0a0r0hcn9 , soybn-i1jx17 , soybn-k7kvv2 , soybn-i1kcl6 , soybn-i1kcl7 , soybn-i1jrc3 , soybn-i1nbz1 , soybn-a0a0r0euk2 , soybn-a0a0r0fx16 , soybn-a0a0r0k3t3 , soybn-i1kuc7 , soybn-i1lvy4 , soybn-i1ms42 , soybn-i1nfg8

Related information

Gene_locus soybn-c6t4m5    soybn-c6t4p4    soybn-c6tav4    soybn-c6tdf9    soybn-c6tiz7    soybn-c6tmg3    soybn-i1jgq5    soybn-i1kpj2    soybn-i1kwe7    soybn-i1l7e3    soybn-i1l497    soybn-i1ll09    soybn-i1lpi4    soybn-i1jcw2    soybn-i1jcw3    soybn-i1jcw4    soybn-i1jcw7    soybn-i1k217    soybn-i1kfz3    soybn-i1lhi0    soybn-k7k6s4    soybn-i1jtw1    soybn-c6tas4    soybn-i1m910    soybn-c6t7k8    soybn-i1k636    soybn-i1kju7    soybn-i1j4c6    soybn-i1lbk2    soybn-i1jqy5    soybn-i1nbj8    soybn-i1j855    soybn-i1l5a3    soybn-k7mt28    soybn-i1lau7    soybn-i1lay0    soybn-i1net3    soybn-i1jr09    soybn-i1ms08    soybn-i1mmh5    soybn-i1mly5    soybn-i1mmh3    soybn-i1mmh4    soybn-i1ngu7    soybn-k7ll20    soybn-i1mly4    soybn-a0a0r0i9y7    soybn-a0a0r0j241    soybn-i1les8    soybn-k7n313    soybn-i1kfj1    soybn-a0a0r0k7x4    soybn-i1ly30    soybn-i1mwr8    soybn-i1kfg5    soybn-i1kly2    soybn-a0a0r0ixi2    soybn-i1jew0    glyso-a0a445l5n1    soybn-i1kfz9    soybn-i1jqs1    soybn-i1nbc7    soybn-k7mm57    soybn-a0a0r0fec7    soybn-a0a0r0hcn9    soybn-i1jx17    soybn-k7kvv2    soybn-i1kcl6    soybn-i1kcl7    soybn-i1jrc3    soybn-i1nbz1    soybn-a0a0r0euk2    soybn-a0a0r0fx16    soybn-a0a0r0k3t3    soybn-i1kuc7    soybn-i1lvy4    soybn-i1ms42    soybn-i1nfg8
Gene_locus_frgt soybn-i1kj12    soybn-i1mnl8    soybn-k7l956    soybn-k7l1k8    soybn-i1mlw1    soybn-k7l1f9    soybn-k7k5s6    soybn-k7l0p4    soybn-a0a0r0gyy6

Citations formats

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA (2010)
Genome sequence of the palaeopolyploid soybean
Nature 463 :178

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA (2010)
Nature 463 :178