| Title : Balancing the stability-activity trade-off by fine-tuning dehalogenase access tunnels - Liskova_2015_ChemCatChem_7_648 |
| Author(s) : Liskova V , Bednar D , Prudnikova T , Rezacova P , Koudelakova T , Sebestova E , Kuta-Smatanova I , Brezovsky J , Chaloupkova R , Damborsky J |
| Ref : ChemCatChem , 7 :648 , 2015 |
| Abstract : |
| PubMedSearch : Liskova_2015_ChemCatChem_7_648 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Dynamics and hydration explain failed functional transformation in dehalogenase design - Sykora_2014_Nat.Chem.Biol_10_428 |
| Author(s) : Sykora J , Brezovsky J , Koudelakova T , Lahoda M , Fortova A , Chernovets T , Chaloupkova R , Stepankova V , Prokop Z , Smatanova IK , Hof M , Damborsky J |
| Ref : Nat Chemical Biology , 10 :428 , 2014 |
| Abstract : |
| PubMedSearch : Sykora_2014_Nat.Chem.Biol_10_428 |
| PubMedID: 24727901 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites - Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| Author(s) : Chaloupkova R , Prudnikova T , Rezacova P , Prokop Z , Koudelakova T , Daniel L , Brezovsky J , Ikeda-Ohtsubo W4 , Sato Y , Kuty M , Nagata Y , Kuta Smatanova I , Damborsky J |
| Ref : Acta Crystallographica D Biol Crystallogr , 70 :1884 , 2014 |
| Abstract : |
| PubMedSearch : Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| PubMedID: 25004965 |
| Gene_locus related to this paper: brael-e2rv62 |
| Title : Strategies for Stabilization of Enzymes in Organic Solvents - Stepankova_2013_ACS.Catal_3_2823 |
| Author(s) : Stepankova V , Bidmanova S , Koudelakova T , Prokop Z , Chaloupkova R , Damborsky J |
| Ref : ACS Catal , 3 :2823 , 2013 |
| Abstract : |
| PubMedSearch : Stepankova_2013_ACS.Catal_3_2823 |
| PubMedID: |
| Title : Engineering enzyme stability and resistance to an organic cosolvent by modification of residues in the access tunnel - Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| Author(s) : Koudelakova T , Chaloupkova R , Brezovsky J , Prokop Z , Sebestova E , Hesseler M , Khabiri M , Plevaka M , Kulik D , Kuta Smatanova I , Rezacova P , Ettrich R , Bornscheuer UT , Damborsky J |
| Ref : Angew Chem Int Ed Engl , 52 :1959 , 2013 |
| Abstract : |
| PubMedSearch : Koudelakova_2013_Angew.Chem.Int.Ed.Engl_52_1959 |
| PubMedID: 23303607 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Haloalkane dehalogenases: Biotechnological applications - Koudelakova_2013_Biotechnol.J_8_32 |
| Author(s) : Koudelakova T , Bidmanova S , Dvorak P , Pavelka A , Chaloupkova R , Prokop Z , Damborsky J |
| Ref : Biotechnol J , 8 :32 , 2013 |
| Abstract : |
| PubMedSearch : Koudelakova_2013_Biotechnol.J_8_32 |
| PubMedID: 22965918 |
| Title : DspA from Strongylocentrotus purpuratus: The first biochemically characterized haloalkane dehalogenase of non-microbial origin - Fortova_2013_Biochimie_95_2091 |
| Author(s) : Fortova A , Sebestova E , Stepankova V , Koudelakova T , Palkova L , Damborsky J , Chaloupkova R |
| Ref : Biochimie , 95 :2091 , 2013 |
| Abstract : |
| PubMedSearch : Fortova_2013_Biochimie_95_2091 |
| PubMedID: 23939220 |
| Gene_locus related to this paper: strpu-h3hrw2 |
| Title : Biochemical characterization of a novel haloalkane dehalogenase from a cold-adapted bacterium - Drienovska_2012_Appl.Environ.Microbiol_78_4995 |
| Author(s) : Drienovska I , Chovancova E , Koudelakova T , Damborsky J , Chaloupkova R |
| Ref : Applied Environmental Microbiology , 78 :4995 , 2012 |
| Abstract : |
| PubMedSearch : Drienovska_2012_Appl.Environ.Microbiol_78_4995 |
| PubMedID: 22582053 |
| Gene_locus related to this paper: psyck-q1qbb9 |
| Title : Substrate specificity of haloalkane dehalogenases - Koudelakova_2011_Biochem.J_435_345 |
| Author(s) : Koudelakova T , Chovancova E , Brezovsky J , Monincova M , Fortova A , Jarkovsky J , Damborsky J |
| Ref : Biochemical Journal , 435 :345 , 2011 |
| Abstract : |
| PubMedSearch : Koudelakova_2011_Biochem.J_435_345 |
| PubMedID: 21294712 |
| Gene_locus related to this paper: agrtu-DHAA , brael-e2rv62 , braja-dhaa , myctu-linb , myctu-Rv1833c , rhoba-DHLA , rhoso-halo1 , sphpi-linb , xanau-halo1 |
| Title : Biochemical characteristics of the novel haloalkane dehalogenase DatA, isolated from the plant pathogen Agrobacterium tumefaciens C58 - Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| Author(s) : Hasan K , Fortova A , Koudelakova T , Chaloupkova R , Ishitsuka M , Nagata Y , Damborsky J , Prokop Z |
| Ref : Applied Environmental Microbiology , 77 :1881 , 2011 |
| Abstract : |
| PubMedSearch : Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| PubMedID: 21193677 |
| Title : Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels - Stsiapanava_2010_Acta.Crystallogr.D.Biol.Crystallogr_66_962 |
| Author(s) : Stsiapanava A , Dohnalek J , Gavira JA , Kuty M , Koudelakova T , Damborsky J , Kuta Smatanova I |
| Ref : Acta Crystallographica D Biol Crystallogr , 66 :962 , 2010 |
| Abstract : |
| PubMedSearch : Stsiapanava_2010_Acta.Crystallogr.D.Biol.Crystallogr_66_962 |
| PubMedID: 20823547 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering - |
| Author(s) : Prokop Z , Sato Y , Brezovsky J , Mozga T , Chaloupkova R , Koudelakova T , Jerabek P , Stepankova V , Natsume R , van Leeuwen JG , Janssen DB , Florian J , Nagata Y , Senda T , Damborsky J |
| Ref : Angew Chem Int Ed Engl , 49 :6111 , 2010 |
| PubMedID: 20645368 |
| Gene_locus related to this paper: braja-dhaa |
| Title : Biochemical characterization of haloalkane dehalogenases DrbA and DmbC, Representatives of a Novel Subfamily - Jesenska_2009_Appl.Environ.Microbiol_75_5157 |
| Author(s) : Jesenska A , Monincova M , Koudelakova T , Hasan K , Chaloupkova R , Prokop Z , Geerlof A , Damborsky J |
| Ref : Applied Environmental Microbiology , 75 :5157 , 2009 |
| Abstract : |
| PubMedSearch : Jesenska_2009_Appl.Environ.Microbiol_75_5157 |
| PubMedID: 19502442 |
| Gene_locus related to this paper: myctu-Rv1833c |
| Title : Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations - Klvana_2009_J.Mol.Biol_392_1339 |
| Author(s) : Klvana M , Pavlova M , Koudelakova T , Chaloupkova R , Dvorak P , Prokop Z , Stsiapanava A , Kuty M , Kuta-Smatanova I , Dohnalek J , Kulhanek P , Wade RC , Damborsky J |
| Ref : Journal of Molecular Biology , 392 :1339 , 2009 |
| Abstract : |
| PubMedSearch : Klvana_2009_J.Mol.Biol_392_1339 |
| PubMedID: 19577578 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Crystals of DhaA mutants from Rhodococcus rhodochrous NCIMB 13064 diffracted to ultrahigh resolution: crystallization and preliminary diffraction analysis - Stsiapanava_2008_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_64_137 |
| Author(s) : Stsiapanava A , Koudelakova T , Lapkouski M , Pavlova M , Damborsky J , Smatanova IK |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 64 :137 , 2008 |
| Abstract : |
| PubMedSearch : Stsiapanava_2008_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_64_137 |
| PubMedID: 18259069 |
| Gene_locus related to this paper: rhoso-halo1 |