xanau-halo1

Xanthobacter autotrophicus, Xanthobacter flavus, Ancylobacter aquaticus, haloalkane dehalogenase DhlA

Comment

Other strains: Xanthobacter autotrophicus GJ10, Xanthobacter flavus\; Ancylobacter aquaticus || Q6Q3H0 AY561847 for Xanthobacter flavus identical

Relationship

Family : Haloalkane_dehalogenase-HLD1

Block : X

Position in NCBI Life Tree : Xanthobacter autotrophicus

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)

> cellular organisms N E > Bacteria N E > Proteobacteria N E > Alphaproteobacteria N E > Rhizobiales N E > Xanthobacteraceae N E > Xanthobacter N E > Xanthobacter autotrophicus N E

Molecular evidence

No mutation

No kinetic

No disease

No inhibitor

Database

Sequence

Peptide

MINAIRTPDQ RFSNLDQYPF SPNYLDDLPG YPGLRAHYLD EGNSDAEDVF LCLHGEPTWS YLYRKMIPVF AESGARVIAP DFFGFGKSDK PVDEEDYTFE FHRNFLLALI ERLDLRNITL VVQDWGGFLG LTLPMADPSR FKRLIIMNAC LMTDPVTQPA FSAFVTQPAD GFTAWKYDLV TPSDLRLDQF MKRWAPTLTE AEASAYAAPF PDTSYQAGVR KFPKMVAQRD QACIDISTEA ISFWQNDWNG QTFMAIGMKD KLLGPDVMYP MKALINGCPE PLEIADAGHF VQEFGEQVAR EALKHFAETE

References (23)

Title : Exploring the challenges of computational enzyme design by rebuilding the active site of a dehalogenase - Jindal_2019_Proc.Natl.Acad.Sci.U.S.A_116_389
Author(s) : Jindal G , Slanska K , Kolev V , Damborsky J , Prokop Z , Warshel A
Ref : Proc Natl Acad Sci U S A , 116 :389 , 2019
PubMedID: 30587585
Gene_locus related to this paper: xanau-halo1

Title : One-step orientated immobilization of nanobodies and its application for immunoglobulin purification - Fu_2019_J.Chromatogr.A_1603_15
Author(s) : Fu J , Li J , Wang W , Wu H , Zhou P , Li Y , He Q , Tu Z
Ref : Journal of Chromatography A , 1603 :15 , 2019
PubMedID: 31213362
Gene_locus related to this paper: xanau-halo1

Title : Bacillus subtilis Spore Surface Display of Haloalkane Dehalogenase DhaA - Wang_2019_Curr.Microbiol_76_1161
Author(s) : Wang F , Song T , Jiang H , Pei C , Huang Q , Xi H
Ref : Curr Microbiol , 76 :1161 , 2019
PubMedID: 31278426
Gene_locus related to this paper: xanau-halo1

Title : A Novel Mini Protein Design of Haloalkane Dehalogenase - Daud_2019_Mol.Biotechnol_61_477
Author(s) : Daud NH , Leow ATC , Oslan SN , Salleh AB
Ref : Mol Biotechnol , 61 :477 , 2019
PubMedID: 30919327
Gene_locus related to this paper: xanau-halo1

Title : Conformational changes allow processing of bulky substrates by a haloalkane dehalogenase with a small and buried active site - Kokkonen_2018_J.Biol.Chem_293_11505
Author(s) : Kokkonen P , Bednar D , Dockalova V , Prokop Z , Damborsky J
Ref : Journal of Biological Chemistry , 293 :11505 , 2018
PubMedID: 29858243
Gene_locus related to this paper: xanau-halo1

Title : Substrate specificity of haloalkane dehalogenases - Koudelakova_2011_Biochem.J_435_345
Author(s) : Koudelakova T , Chovancova E , Brezovsky J , Monincova M , Fortova A , Jarkovsky J , Damborsky J
Ref : Biochemical Journal , 435 :345 , 2011
PubMedID: 21294712
Gene_locus related to this paper: agrtu-DHAA , brael-e2rv62 , braja-dhaa , myctu-linb , myctu-Rv1833c , rhoba-DHLA , rhoso-halo1 , sphpi-linb , xanau-halo1

Title : The effect of deuteration on protein structure: a high-resolution comparison of hydrogenous and perdeuterated haloalkane dehalogenase - Liu_2007_Acta.Crystallogr.D.Biol.Crystallogr_63_1000
Author(s) : Liu X , Hanson BL , Langan P , Viola RE
Ref : Acta Crystallographica D Biol Crystallogr , 63 :1000 , 2007
PubMedID: 17704569
Gene_locus related to this paper: xanau-halo1

Title : Exploring the binding sites of the haloalkane dehalogenase DhlA from Xanthobacter autotrophicus GJ10 - Silberstein_2007_Biochemistry_46_9239
Author(s) : Silberstein M , Damborsky J , Vajda S
Ref : Biochemistry , 46 :9239 , 2007
PubMedID: 17645312
Gene_locus related to this paper: xanau-halo1

Title : Comparative binding energy analysis of the substrate specificity of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 - Kmunicek_2001_Biochemistry_40_8905
Author(s) : Kmunicek J , Luengo S , Gago F , Ortiz AR , Wade RC , Damborsky J
Ref : Biochemistry , 40 :8905 , 2001
PubMedID: 11467952
Gene_locus related to this paper: xanau-halo1

Title : Crystallographic and kinetic evidence of a collision complex formed during halide import in haloalkane dehalogenase - Pikkemaat_1999_Biochemistry_38_12052
Author(s) : Pikkemaat MG , Ridder IS , Rozeboom HJ , Kalk KH , Dijkstra BW , Janssen DB
Ref : Biochemistry , 38 :12052 , 1999
PubMedID: 10508409
Gene_locus related to this paper: xanau-halo1

Title : Haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 refined at 1.15 A resolution - Ridder_1999_Acta.Crystallogr.D.Biol.Crystallogr_55_1273
Author(s) : Ridder IS , Rozeboom HJ , Dijkstra BW
Ref : Acta Crystallographica D Biol Crystallogr , 55 :1273 , 1999
PubMedID: 10393294
Gene_locus related to this paper: xanau-halo1

Title : Kinetic analysis and X-ray structure of haloalkane dehalogenase with a modified halide-binding site - Krooshof_1998_Biochemistry_37_15013
Author(s) : Krooshof GH , Ridder IS , Tepper AW , Vos GJ , Rozeboom HJ , Kalk KH , Dijkstra BW , Janssen DB
Ref : Biochemistry , 37 :15013 , 1998
PubMedID: 9790663
Gene_locus related to this paper: xanau-halo1

Title : Kinetic characterization and X-ray structure of a mutant of haloalkane dehalogenase with higher catalytic activity and modified substrate range - Schanstra_1996_Biochemistry_35_13186
Author(s) : Schanstra JP , Ridder IS , Heimeriks GJ , Rink R , Poelarends GJ , Kalk KH , Dijkstra BW , Janssen DB
Ref : Biochemistry , 35 :13186 , 1996
PubMedID: 8855957
Gene_locus related to this paper: xanau-halo1

Title : Sequence analysis of the upstream region of dhlB, the gene encoding haloalkanoic acid dehalogenase of Xanthobacter autotrophicus GJ10 - van der Ploeg_1995_Biodegradation_6_257
Author(s) : van der Ploeg J , Janssen DB
Ref : Biodegradation , 6 :257 , 1995
PubMedID: 7580000
Gene_locus related to this paper: xanau-halo1

Title : Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase - Verschueren_1993_Nature_363_693
Author(s) : Verschueren KH , Seljee F , Rozeboom HJ , Kalk KH , Dijkstra BW
Ref : Nature , 363 :693 , 1993
PubMedID: 8515812
Gene_locus related to this paper: xanau-halo1

Title : Crystallographic and fluorescence studies of the interaction of haloalkane dehalogenase with halide ions. Studies with halide compounds reveal a halide binding site in the active site - Verschueren_1993_Biochemistry_32_9031
Author(s) : Verschueren KH , Kingma J , Rozeboom HJ , Kalk KH , Janssen DB , Dijkstra BW
Ref : Biochemistry , 32 :9031 , 1993
PubMedID: 8369276
Gene_locus related to this paper: xanau-halo1

Title : Non-covalent binding of the heavy atom compound [Au(CN)2]- at the halide binding site of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 - Verschueren_1993_FEBS.Lett_323_267
Author(s) : Verschueren KH , Franken SM , Rozeboom HJ , Kalk KH , Dijkstra BW
Ref : FEBS Letters , 323 :267 , 1993
PubMedID: 8500621
Gene_locus related to this paper: xanau-halo1

Title : Crystal structure of haloalkane dehalogenase: an enzyme to detoxify halogenated alkanes - Franken_1991_EMBO.J_10_1297
Author(s) : Franken SM , Rozeboom HJ , Kalk KH , Dijkstra BW
Ref : EMBO Journal , 10 :1297 , 1991
PubMedID: 2026135
Gene_locus related to this paper: xanau-halo1

Title : Involvement of a large plasmid in the degradation of 1,2-dichloroethane by Xanthobacter autotrophicus - Tardif_1991_Appl.Environ.Microbiol_57_1853
Author(s) : Tardif G , Greer CW , Labbe D , Lau PC
Ref : Applied Environmental Microbiology , 57 :1853 , 1991
PubMedID: 1872615
Gene_locus related to this paper: xanau-halo1

Title : Characterization of the haloacid dehalogenase from Xanthobacter autotrophicus GJ10 and sequencing of the dhlB gene - van der Ploeg_1991_J.Bacteriol_173_7925
Author(s) : van der Ploeg J , van Hall G , Janssen DB
Ref : Journal of Bacteriology , 173 :7925 , 1991
PubMedID: 1744048
Gene_locus related to this paper: xanau-halo1

Title : Cloning of 1,2-dichloroethane degradation genes of Xanthobacter autotrophicus GJ10 and expression and sequencing of the dhlA gene - Janssen_1989_J.Bacteriol_171_6791
Author(s) : Janssen DB , Pries F , van der Ploeg J , Kazemier B , Terpstra P , Witholt B
Ref : Journal of Bacteriology , 171 :6791 , 1989
PubMedID: 2687254
Gene_locus related to this paper: xanau-halo1

Title : Crystallization of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 - Rozeboom_1988_J.Mol.Biol_200_611
Author(s) : Rozeboom HJ , Kingma J , Janssen DB , Dijkstra BW
Ref : Journal of Molecular Biology , 200 :611 , 1988
PubMedID: 3398051
Gene_locus related to this paper: xanau-halo1

Title : Purification and characterization of hydrolytic haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 - Keuning_1985_J.Bacteriol_163_635
Author(s) : Keuning S , Janssen DB , Witholt B
Ref : Journal of Bacteriology , 163 :635 , 1985
PubMedID: 4019411
Gene_locus related to this paper: xanau-halo1