(The family Pha_synthase was split in four families (PHA_synth_I, PHA_synth_II, PHA_synth_III, PhaC_cen_dom ) according to Interpro and Tigrpfam. PhaC_cen_dom groups enzyme with the central domain but not the class I,II,III domains)This entry represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR is not an a/b hydrolase), all members require PhaE (IPR010123 PhaE is not an a/b hydrolase) subunit for activity and are designated class III. (PhaC of Bacillus associated to PhaR are designed Class IV PHA_synth_IV but are not separated here) . This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerise short-chain-length hydroxyalkanoates. Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus. This entry represents the central domain of the bacterial poly-beta-hydroxybutyrate polymerase (PhaC). Polyhydroxyalkanoic acids (PHAs) are carbon and energy reserve polymers produced in some bacteria when carbon sources are plentiful and another nutrient, such as nitrogen, phosphate, oxygen, or sulphur, becomes limiting. PHAs composed of monomeric units ranging from 3 to 14 carbons exist in nature. When the carbon source is exhausted, PHA is utilised by the bacterium. PhaC links D-(-)-3-hydroxybutyrl-CoA to an existing PHA molecule by the formation of an ester bond PHA_synth_I TIGR01838 PHA_synth_II TIGR01839. The nucleophilic residue of the catalytic triad is a cysteine (with exceptions)
Interpro : IPR010941 PhaC_cen_dom Poly-beta-hydroxybutyrate polymerase, central domain , IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit PHA_synth_III_C
PIRSF : No PIRSF
Pdoc : No Pdoc
Pfam : PF07167 PhaC_N
Prints : No Print
EC Number : No EC Number
Peptide in | Fasta |
Nucleotide in | Fasta |
Alignment with Multalin | Text only |
Seed alignment with MAFFT | No colour / coloured with Mview |
Alignment with MAFFT | No colour / coloured with Mview |
Dendrogram | The dnd file |
Gene_locus | Name | Species |
---|---|---|
9alte-a6f5f2 | Marinobacter algicola DG893 Polyhydroxyalkanoate synthase | Marinobacter algicola DG893 |
9arch-b3t6z4 | uncultured marine crenarchaeote HF4000_APKG2O16 Putative alpha\/beta hydrolase fold | uncultured marine crenarchaeote HF4000_APKG2O16 |
9baci-q2b2r4 | Bacillus sp. NRRL B-14911 poly(r)-hydroxyalkanoic acid synthase, class III, phac subunit | Bacillus sp. NRRL B-14911 |
9bact-b9xjh1 | Pedosphaera parvula Ellin514 Alpha\/beta hydrolase fold protein | Pedosphaera parvula Ellin514 |
9clot-a0a1e8ew64 | Clostridium acetireducens DSM 10703 Poly(3-hydroxyalkanoate) polymerase subunit | Clostridium acetireducens DSM 10703 |
9cren-Q8NKN4 | uncultured crenarchaeote putative pha synthase | uncultured crenarchaeote |
9delt-a6ge99 | Plesiocystis pacifica SIR-1 Acyl-CoA synthase | Plesiocystis pacifica SIR-1 |
9eury-c1vc42 | Halogeometricum borinquense DSM 11551 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Halogeometricum borinquense DSM 11551 |
9firm-q3gbl4 | Syntrophomonas wolfei subsp. wolfei str. Goettingen alpha\/beta hydrolase fold | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
9gamm-a0y7n9 | marine gamma proteobacterium HTCC2143 Probable poly-beta-hydroxybutyrate polymerase | marine gamma proteobacterium HTCC2143 |
9gamm-a4bpm4 | Nitrococcus mobilis Nb-231 Poly(3-hydroxybutyric acid) synthase | Nitrococcus mobilis Nb-231 |
9gamm-b4wy97 | Alcanivorax sp. DG881 Hydrolase, alpha\/beta fold family protein | Alcanivorax sp. DG881 |
9gamm-b4x1v2 | Alcanivorax sp. DG881 Hydrolase, alpha\/beta fold family protein | Alcanivorax sp. DG881 |
9gamm-b5juw6 | gamma proteobacterium HTCC5015 Polyhydroxyalkanoate synthase | gamma proteobacterium HTCC5015 |
9gamm-b7ryc6 | marine gamma proteobacterium HTCC2148 Hydrolase, alpha\/beta fold family protein | marine gamma proteobacterium HTCC2148 |
9gamm-c0vkq2 | Acinetobacter sp. ATCC 27244 Poly(R)-hydroxyalkanoic acid synthase | Acinetobacter sp. ATCC 27244 |
9gamm-c0vnz2 | Acinetobacter sp. ATCC 27244 Poly(R)-hydroxyalkanoic acid synthase | Acinetobacter sp. ATCC 27244 |
9gamm-d0bx52 | Acinetobacter sp. RUH2624 Poly(3-hydroxyalkanoate) synthetase | Acinetobacter sp. RUH2624 |
9gamm-d0c4a7 | Acinetobacter sp.\; Acinetobacter nosocomialis Poly(R)-hydroxyalkanoic acid synthase | Acinetobacter sp. RUH2624 |
9gamm-q2bmp7 | Oceanospirillum sp. MED92 poly(3-hydroxyalkanoate) synthase | Oceanospirillum sp. MED92 |
9prot-a4u5l5 | Magnetospirillum gryphiswaldense Poly-beta-hydroxybutyrate polymerase | Magnetospirillum gryphiswaldense |
9prot-a8u0q2 | alpha proteobacterium BAL199 Poly-beta-hydroxybutyrate polymerase | alpha proteobacterium BAL199 |
9sphn-q1ndz5 | Sphingomonas sp. SKA58 Poly-beta-hydroxybutyrate polymerase | Sphingomonas sp. SKA58 |
aciad-q6fa15 | Acinetobacter sp. (strain ADP1) putative poly(r)-hydroxyalkanoic acid synthase (pha) | Acinetobacter sp. |
acibc-b2huf4 | Acinetobacter baumannii\; Azomonas macrocytogenes, Poly(3-hydroxyalkanoate) synthetase class III | Acinetobacter baumannii |
acibc-b2i0a2 | Acinetobacter baumannii (strains ACICU\; AYE\; AB307-0294\; AB0057\; ATCC 19606\; SDF\; ATCC17978\/NCDCKC755) Poly(3-hydroxyalkanoate) synthetase | Acinetobacter baumannii |
acica-d0s2a4 | Acinetobacter calcoaceticus RUH2202 Poly(3-hydroxyalkanoate) synthetase | Acinetobacter calcoaceticus RUH2202 |
acica-d0s3r3 | Acinetobacter calcoaceticus RUH2202 Poly(3-hydroxyalkanoate) synthetase | Acinetobacter calcoaceticus RUH2202 |
acicj-a5g0r8 | Acidiphilium cryptum (strain JF-5) poly (3-hydroxybutyric acid) synthase Alpha\/beta hydrolase fold protein | Acidiphilium cryptum |
acijo-d0sek9 | Acinetobacter johnsonii SH046 Putative uncharacterized protein | Acinetobacter johnsonii SH046 |
aciju-d0sin4 | Acinetobacter junii SH205 Poly(3-hydroxyalkanoate) synthetase | Acinetobacter junii SH205 |
acilw-d0ssw2 | Acinetobacter lwoffii SH145 Putative uncharacterized protein | Acinetobacter lwoffii SH145 |
acira-c6rnl3 | Acinetobacter radioresistens (strains SK82\; SH164) Poly(3-hydroxyalkanoate) synthetase | Acinetobacter radioresistens SK82 |
alcbs-q0vmd6 | Alcanivorax borkumensis (strain SK2 \/ ATCC 700651 \/ DSM 11573) Polyhydroxyalkanoate synthase | Alcanivorax borkumensis |
alcbs-q0vpn2 | Alcanivorax borkumensis (strain SK2 \/ ATCC 700651 \/ DSM 11573) Polyhydroxyalkanoate synthase | Alcanivorax borkumensis |
alheh-q0a5r2 | Alkalilimnicola ehrlichei (strain MLHE-1) Alpha\/beta hydrolase fold protein | Alkalilimnicola ehrlichei |
aroae-q5nz38 | Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)) pha synthase subunit phac | Aromatoleum aromaticum EbN1 |
azos1-d3nx23 | Azospirillum sp. (strain B510) Polyhydroxyalkanoate synthase | Azospirillum sp. |
azovd-c1di03 | Azotobacter vinelandii (strain DJ \/ ATCC BAA-1303) Poly(3-hydroxybutyrate) synthase subunit | Azotobacter vinelandii |
bacce-PHAC | Bacillus cereus, Bacillus thuringiensis, Bacillus sp. Bacillus anthracis (strain Ames)pha synthase poly(r)-hydroxyalkanoic acid synthase, class III, phac subunit | Bacillus cereus |
bacce-q2ebc5 | Bacillus cereus subsp. cytotoxis NVH 391-98 poly(r)-hydroxyalkanoic acid synthase, class III, phac subunit | Bacillus cereus subsp. cytotoxis NVH 391-98 |
bacme-PHAC | Bacillus megaterium pha synthase phac | Bacillus megaterium |
braja-BLR2885 | Bradyrhizobium japonicum blr2885 protein | Bradyrhizobium japonicum |
censy-a0rx85 | Cenarchaeum symbiosum (strain A) Poly(3-hydroxyalkanoate) synthetase | Cenarchaeum symbiosum |
chlaa-a9wiz2 | Chloroflexus aurantiacus (strain ATCC 29366 \/ DSM 635 \/ J-10-fl\; ATCC 29364 \/ DSM 637 \/ Y-400-fl) Alpha\/beta hydrolase fold-containing protein | Chloroflexus aurantiacus |
chlad-b8g4g0 | Chloroflexus aggregans (strain MD-66 \/ DSM 9485) Alpha\/beta hydrolase fold protein | Chloroflexus aggregans |
chlfr-PHAC | Chlorogloeopsis fritschii phac Pha synthase | Chlorogloeopsis fritschii |
chrvi-phbc | Chromatium vinosum (Allochromatium vinosum) PHA synthase subunit C (polyhydroxyalkanoic acid synthase) | Chromatium vinosum |
conwi-d3f2q0 | Conexibacter woesei (strain DSM 14684 \/ JCM 11494 \/ NBRC 100937 \/ ID131577) Alpha\/beta hydrolase fold protein | Conexibacter woesei |
desml-phaCDm | Desulfococcus multivorans class III PHA synthase-like phaCDm | Desulfococcus multivorans |
ectva-PHAC | Ectothiorhodospira vacuolata pha synthase subunit phac | Ectothiorhodospira vacuolata |
ferpa-d3ryk7 | Ferroglobus placidus (strain DSM 10642 \/ AEDII12DO) Alpha\/beta hydrolase fold protein | Ferroglobus placidus |
geoog-d2set8 | Geodermatophilus obscurus (strain ATCC 25078 \/ DSM 43160 \/ JCM 3152 G-20) Alpha\/beta hydrolase fold protein | Geodermatophilus obscurus |
gloc7-PHAC | Gloeothece citriformis (strain PCC 7424) (Cyanothece sp.) Poly(3-hydroxyalkanoate) polymerase subunit | Gloeothece citriformis PCC 7424 |
gluda-a9h1f4 | Gluconacetobacter diazotrophicus (strain ATCC 49037 \/ DSM 5601 \/ PAl5) Putative poly-beta-hydroxybutyrate polymerase | Gluconacetobacter diazotrophicus |
gluda-b5zj06 | Gluconacetobacter diazotrophicus (strain ATCC 49037 \/ DSM 5601 \/ PAl5) Alpha\/beta hydrolase fold | Gluconacetobacter diazotrophicus |
gorb4-d0l956 | Gordonia bronchialis (strain ATCC 25592 \/ DSM 43247 \/ JCM 3198 \/ NCT 10667) (Rhodococcus bronchialis) AMP-dependent synthetase and ligase | Gordonia bronchialis |
grabc-q0bqk9 | Granulibacter bethesdensis (strain ATCC BAA-1260 \/ CGDNIH1) Poly-beta-hydroxybutyrate polymerase | Granulibacter bethesdensis |
hahch-q2sl80 | Hahella chejuensis (strain KCTC 2396) poly(3-hydroxyalkanoate) synthetase | Hahella chejuensis |
halhl-a1wz56 | Halorhodospira halophila (strain DSM 244 \/ SL1) (Ectothiorhodospir halophila (strain DSM 244 \/ SL1)) Alpha\/beta hydrolase fold protein | Halorhodospira halophila |
halma-q5uym0 | Haloarcula marismortui (Halobacterium marismortui) Haloarcula hispanica poly(3-hydroxyalkanoate) synthase subunit PhaC | Haloarcula marismortui |
halme-b3frm5 | Halobacterium mediterranei (Haloferax mediterranei) Poly(3-hydroxyalkanoate) polymerase subunit PhaC | Halobacterium mediterranei |
halwc-g0lkv6 | Haloquadratum walsbyi (strain DSM 16854 \/ JCM 12705 \/ C23) Poly(3-hydroxyalkanoate) polymerase subunit | Haloquadratum walsbyi C23 |
magsa-q2w930 | Magnetospirillum magneticum (strain AMB-1 \/ ATCC 700264) poly-beta-hydroxybutyrate polymerase | Magnetospirillum magneticum |
magsm-a0l6t8 | Magnetococcus sp. (strain MC-1) Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Magnetococcus sp. MC-1 |
marav-a1u795 | Marinobacter aquaeolei (strain ATCC 700491 \/ DSM 11845 \/ VT8 (Marinobacter hydrocarbonoclasticus (strain DSM 11845)) Alpha\/beta hydrolase fold protein | Marinobacter hydrocarbonoclasticus VT8 |
metno-b8il10 | Methylobacterium nodulans (strain ORS2060 \/ LMG 21967) PHA synthase subunit PhaC | Methylobacterium nodulans |
mets4-b0upq5 | Methylobacterium sp. (strain 4-46) PHA synthase subunit PhaC | Methylobacterium sp. |
myca9-b1mb08 | Mycobacterium abscessus (strain ATCC 19977 \/ DSM 44196) Possible long-chain acyl-CoA synthase | Mycobacterium abscessus |
myca9-b1mcm4 | Mycobacterium abscessus (strain ATCC 19977 \/ DSM 44196) Putative hydrolase | Mycobacterium abscessus |
mycgi-a4t9x4 | Mycobacterium gilvum (strain PYR-GCK) (Mycobacterium flavescens (strain ATCC 700033 \/ PYR-GCK)) AMP-dependent synthetase and ligase | Mycobacterium gilvum |
mycle-MLC1351.21C | Mycobacterium leprae (and strain Br4923) hypothetical 109.2 kda protein | Mycobacterium leprae |
mycpa-q740g2 | Mycobacterium paratuberculosis Mycobacterium avium (strain 104) hypothetical protein | Mycobacterium paratuberculosis |
mycs2-a0qys3 | Mycobacterium smegmatis (strain ATCC 700084 \/ mc(2)155) Acyl-CoA synthase | Mycobacterium smegmatis |
mycss-q1b7r5 | Mycobacterium sp. (strains MCS\; KMS\; JLS) AMP-dependent synthetase and ligase | Mycobacterium sp. |
myctu-RV1683 | Mycobacterium tuberculosis, Mycobacterium bovis, Mycobacterium marinum, Mycobacterium ulcerans,107.4 kda protein dehydrogenase (EC 6.2.1.-) long-chain Acyl-CoA synthetase RV1683 | Mycobacterium tuberculosis |
mycvp-a1ta99 | Mycobacterium vanbaalenii (strain DSM 7251 \/ PYR-1) AMP-dependent synthetase and ligase | Mycobacterium vanbaalenii |
nocfa-q5yqw8 | Nocardia farcinica putative hydrolase | Nocardia farcinica |
nocfa-q5yyb5 | Nocardia farcinica putative Acyl-CoA synthetase | Nocardia farcinica |
nocsj-a1snv7 | Nocardioides sp. (strain BAA-499 \/ JS614) Alpha\/beta hydrolase fold protein | Nocardioides sp. |
rhil3-q1m841 | Rhizobium leguminosarum bv. viciae (strain 3841) putative polyhydroxyalkanoate synthase subunit c | Rhizobium leguminosarum bv. viciae |
rhocs-b6ir92 | Rhodospirillum centenum (strain ATCC 51521 \/ SW) Polyhydroxyalkanoic acid synthase, putative | Rhodospirillum centenum |
rhoe4-c0zp80 | Rhodococcus erythropolis (strain PR4 \/ NBRC 100887) Putative hydrolase | Rhodococcus erythropolis |
rhoer-c3jep8 | Rhodococcus erythropolis SK121 Hydrolase, alpha\/beta fold family | Rhodococcus erythropolis SK121 |
rhoer-c3jqs1 | Rhodococcus erythropolis (strains SK121\; PR4 \/ NBRC 100887) Putative fatty-acid--CoA ligase and AMP-binding enzyme domain protein | Rhodococcus erythropolis SK121 |
rhoob-c1asz4 | Rhodococcus opacus (strain B4) Rhodococcus sp. (strain RHA1) Possible long-chain acyl-CoA synthase Putative fatty-acid--CoA ligase | Rhodococcus opacus |
rhoob-c1ba50 | Rhodococcus opacus (strain B4) Putative hydrolase | Rhodococcus opacus |
rhort-q2rxr5 | Rhodospirillum rubrum (strain ATCC 11170 \/ NCIB 8255) alpha\/beta hydrolase fold | Rhodospirillum rubrum |
rhosr-q0s8f4 | Rhodococcus sp. (strain RHA1) Probable poly-beta-hydroxybutyrate polymerase | Rhodococcus sp. |
rubxd-q1atg5 | Rubrobacter xylanophilus (strain DSM 9941 \/ NBRC 16129) Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Rubrobacter xylanophilus |
strm5-b4smq6 | Stenotrophomonas maltophilia (strains R551-3\; K279a)Stenotrophomonas sp. SKA14 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Stenotrophomonas maltophilia |
synsp-PHAC | Synechococcus sp. MA19 PHA synthase | Synechococcus sp. MA19 |
synsp-PHBC | Synechocystis sp.(strain PCC 6803 \/ Kazusa) poly(3-hydroxyalkanoate) synthase | Synechocystis sp. |
synww-q0axz5 | Syntrophomonas wolfei subsp. wolfei (strain Goettingen) Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Syntrophomonas wolfei subsp. wolfei |
thecd-d1abk7 | Thermomonospora curvata (strain ATCC 19995 \/ DSM 43183 \/ JCM 3096 \/ NCIMB 10081) Alpha\/beta hydrolase fold protein | Thermomonospora curvata |
thivi-phbc | Thiocystis violacea (polyhydroxyalkanoic acid synthase) | Thiocystis violacea |
xanax-PHBC | Xanthomonas axonopodis (pv. citri) Xanthomonas campestris pv. vesicatoria (strain 85-10) poly (3-hydroxybutyric acid) synthase | Xanthomonas axonopodis |
xanca-PHBC | Xanthomonas campestris (pv. campestris)( and strain 8004) poly (3-hydroxybutyric acid) synthase | Xanthomonas campestris |
xanor-q5h0p6 | Xanthomonas oryzae pv. oryzae ( and strain MAFF 311018) poly (3-hydroxybutyric acid) synthase | Xanthomonas oryzae pv. oryzae |
Substrate | Chemical Nomenclature | Proteins |
---|---|---|
3-hydroxybutyrate | bacce-PHAC alceu-phbc psefl-q6xh00 | |
3HB-CoA | S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] 3-hydroxybutanethioate | ralso-PHBC alceu-phbc chrvi-phbc bacce-PHAC psefl-q6xh00 |
Title : Polyhydroxyalkanoate synthase (PhaC): The key enzyme for biopolyester synthesis - Neoh_2022_Curr.Res.Biotechnol_4_87 |
Author(s) : Neoh SZ , Chek MF , Tan HT , Linares-Pasten JA , Nandakumar A , Hakoshima T , Sudesh K |
Ref : Current Research in Biotechnology , 4 :87 , 2022 |
Abstract : |
PubMedSearch : Neoh_2022_Curr.Res.Biotechnol_4_87 |
PubMedID: |
Title : Polyester synthases: natural catalysts for plastics - Rehm_2003_Biochem.J_376_15 |
Author(s) : Rehm BH |
Ref : Biochemical Journal , 376 :15 , 2003 |
Abstract : |
PubMedSearch : Rehm_2003_Biochem.J_376_15 |
PubMedID: 12954080 |
Title : PhaC and PhaR are required for polyhydroxyalkanoic acid synthase activity in Bacillus megaterium - McCool_2001_J.Bacteriol_183_4235 |
Author(s) : McCool GJ , Cannon MC |
Ref : Journal of Bacteriology , 183 :4235 , 2001 |
Abstract : |
PubMedSearch : McCool_2001_J.Bacteriol_183_4235 |
PubMedID: 11418564 |
Gene_locus related to this paper: bacme-PHAC |