Gene_locus Report for: capan-a0a1u8flz5

Other strains: Capsicum annuum (Capsicum pepper); Capsicum baccatum (Peruvian pepper); Capsicum chinense (Scotch bonnet) (Bonnet pepper)

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > lamiids: N E > Solanales: N E > Solanaceae: N E > Solanoideae: N E > Capsiceae: N E > Capsicum: N E > Capsicum annuum: N E

Bodyguard : capan-a0a1u8g161Capsicum annuum (Bell pepper, Peruvian pepper, Bonnet pepper); Capsicum baccatum; Capsicum chinense (Scotch bonnet) Uncharacterized protein.
Plant_carboxylesterase : capan-PepESTCapsicum annuum (and Capsicum chinense (Scotch bonnet) (Bonnet pepper)) (Bell pepper) pepper esterase (PepEST) mRNA, complete cds, capan-a0a2g2y016Capsicum annuum (Capsicum pepper); Capsicum baccatum (Peruvian pepper). Abhydrolase_3 domain-containing protein.
Plant_lipase_EDS1-like : capan-a0a1u8hd13Capsicum annuum (Capsicum pepper); Capsicum baccatum (Peruvian pepper). Uncharacterized protein.
Plant_phospholipase : capan-a5yw95 Capsicum annuum (Capsicum pepper) phospholipase A1, CaPLA1.
Triacylglycerol-lipase-OBL1-like : capan-a0a1u8f879Capsicum annuum (Capsicum pepper). uncharacterized protein LOC107851852, capan-a0a1u8fpc9Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein, capan-a0a1u8fqs3Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein, capan-a0a1u8ftr2Capsicum annuum (Capsicum pepper). uncharacterized protein LOC107861396 isoform X2, capan-a0a1u8ft99Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein, capan-a0a1u8g8s6Capsicum annuum (Capsicum pepper). uncharacterized protein LOC107865860, capan-a0a2g2xtt0Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein, capan-a0a1u8eu02Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein.
UCP031088 : capan-a0a1u8fuf5Capsicum annuum (Bell pepper); Capsicum baccatum (Peruvian pepper); Capsicum chinense (Scotch bonnet) (Bonnet pepper). uncharacterized protein LOC107861918 isoform X1, capan-a0a1u8gmz3Capsicum annuum (Bell pepper); Capsicum baccatum (Peruvian pepper); Capsicum chinense (Scotch bonnet) (Bonnet pepper). uncharacterized protein LOC107870576 isoform X1

Title: New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication
Kim S, Park J, Yeom SI, Kim YM, Seo E, Kim KT, Kim MS, Lee JM, Cheong K and Choi D <27 more author(s)> Kim S, Park J, Yeom SI, Kim YM, Seo E, Kim KT, Kim MS, Lee JM, Cheong K, Shin HS, Kim SB, Han K, Lee J, Park M, Lee HA, Lee HY, Lee Y, Oh S, Lee JH, Choi E, Lee SE, Jeon J, Kim H, Choi G, Song H, Lee SC, Kwon JK, Koo N, Hong Y, Kim RW, Kang WH, Huh JH, Kang BC, Yang TJ, Lee YH, Bennetzen JL, Choi D (- 27)
Ref: Genome Biol, 18:210, 2017 : PubMed
Abstract


ESTHER: Kim_2017_Genome.Biol_18_210
PubMedSearch: Kim 2017 Genome.Biol 18 210
PubMedID: 29089032
Gene_locus related to this paper: capch-q75qh4, capan-a0a1u8fuf5, capan-a0a1u8gmz3, capch-a0a2g3bqp0, capba-a0a2g2vcw4, capan-a0a1u8flz5, capch-a0a2g3bau3, capch-a0a2g3b6c0, capan-a0a2g2y016, capch-a0a2g3cje8, capba-a0a2g2xr67, capan-a0a1u8fpc9, capan-a0a1u8fqs3, capan-a0a1u8ft99, capan-a0a2g2xtt0, capan-a0a1u8eu02, capan-a0a1u8hd13

Abstract

BACKGROUND: Transposable elements are major evolutionary forces which can cause new genome structure and species diversification. The role of transposable elements in the expansion of nucleotide-binding and leucine-rich-repeat proteins (NLRs), the major disease-resistance gene families, has been unexplored in plants. RESULTS: We report two high-quality de novo genomes (Capsicum baccatum and C. chinense) and an improved reference genome (C. annuum) for peppers. Dynamic genome rearrangements involving translocations among chromosomes 3, 5, and 9 were detected in comparison between C. baccatum and the two other peppers. The amplification of athila LTR-retrotransposons, members of the gypsy superfamily, led to genome expansion in C. baccatum. In-depth genome-wide comparison of genes and repeats unveiled that the copy numbers of NLRs were greatly increased by LTR-retrotransposon-mediated retroduplication. Moreover, retroduplicated NLRs are abundant across the angiosperms and, in most cases, are lineage-specific. CONCLUSIONS: Our study reveals that retroduplication has played key roles for the massive emergence of NLR genes including functional disease-resistance genes in pepper plants.