Machida_2005_Nature_438_1157

Reference

Title : Genome sequencing and analysis of Aspergillus oryzae - Machida_2005_Nature_438_1157
Author(s) : Machida M , Asai K , Sano M , Tanaka T , Kumagai T , Terai G , Kusumoto K , Arima T , Akita O , Kashiwagi Y , Abe K , Gomi K , Horiuchi H , Kitamoto K , Kobayashi T , Takeuchi M , Denning DW , Galagan JE , Nierman WC , Yu J , Archer DB , Bennett JW , Bhatnagar D , Cleveland TE , Fedorova ND , Gotoh O , Horikawa H , Hosoyama A , Ichinomiya M , Igarashi R , Iwashita K , Juvvadi PR , Kato M , Kato Y , Kin T , Kokubun A , Maeda H , Maeyama N , Maruyama J , Nagasaki H , Nakajima T , Oda K , Okada K , Paulsen I , Sakamoto K , Sawano T , Takahashi M , Takase K , Terabayashi Y , Wortman JR , Yamada O , Yamagata Y , Anazawa H , Hata Y , Koide Y , Komori T , Koyama Y , Minetoki T , Suharnan S , Tanaka A , Isono K , Kuhara S , Ogasawara N , Kikuchi H
Ref : Nature , 438 :1157 , 2005
Abstract :

The genome of Aspergillus oryzae, a fungus important for the production of traditional fermented foods and beverages in Japan, has been sequenced. The ability to secrete large amounts of proteins and the development of a transformation system have facilitated the use of A. oryzae in modern biotechnology. Although both A. oryzae and Aspergillus flavus belong to the section Flavi of the subgenus Circumdati of Aspergillus, A. oryzae, unlike A. flavus, does not produce aflatoxin, and its long history of use in the food industry has proved its safety. Here we show that the 37-megabase (Mb) genome of A. oryzae contains 12,074 genes and is expanded by 7-9 Mb in comparison with the genomes of Aspergillus nidulans and Aspergillus fumigatus. Comparison of the three aspergilli species revealed the presence of syntenic blocks and A. oryzae-specific blocks (lacking synteny with A. nidulans and A. fumigatus) in a mosaic manner throughout the genome of A. oryzae. The blocks of A. oryzae-specific sequence are enriched for genes involved in metabolism, particularly those for the synthesis of secondary metabolites. Specific expansion of genes for secretory hydrolytic enzymes, amino acid metabolism and amino acid/sugar uptake transporters supports the idea that A. oryzae is an ideal microorganism for fermentation.

PubMedSearch : Machida_2005_Nature_438_1157
PubMedID: 16372010
Gene_locus related to this paper: aspor-Q2U722 , aspfn-b8mvx2 , aspfn-b8mwk1 , aspfn-b8n1a4 , aspfn-b8n5l3 , aspfn-b8n7y0 , aspfn-b8n829 , aspfn-b8ncj5 , aspfn-b8nhj9 , aspfn-b8njx6 , aspfn-b8nsk2 , aspfu-q4wj61 , aspor-axe1 , aspor-CPI , aspor-cutas , aspor-cuti2 , aspor-DPPIV , aspor-faec , aspor-MDLB , aspor-ppme1 , aspor-q2tw11 , aspor-q2tw16 , aspor-q2tw28 , aspor-q2twc4 , aspor-q2twg0 , aspor-q2twj3 , aspor-q2twv2 , aspor-q2twv4 , aspor-q2tx21 , aspor-q2txq8 , aspor-q2tya1 , aspor-q2tyh6 , aspor-q2tyn9 , aspor-q2typ0 , aspor-q2tyq4 , aspor-q2tyv8 , aspor-q2tz03 , aspor-q2tzh3 , aspor-q2tzr5 , aspor-q2tzv9 , aspor-q2u0k7 , aspor-q2u0q2 , aspor-q2u0r6 , aspor-q2u1a5 , aspor-q2u1a6 , aspor-q2u1k0 , aspor-q2u1k8 , aspor-q2u1m8 , aspor-q2u2a1 , aspor-q2u2a4 , aspor-q2u3a3 , aspor-q2u3a6 , aspor-q2u3k5 , aspor-q2u3l6 , aspor-q2u4a0 , aspor-q2u4e0 , aspor-q2u4f6 , aspor-q2u4g6 , aspor-q2u4h9 , aspor-q2u4w9 , aspor-q2u4y8 , aspor-q2u5f5 , aspor-q2u5n3 , aspor-q2u5y8 , aspor-q2u6h7 , aspor-q2u6j5 , aspor-q2u6m8 , aspor-q2u6m9 , aspor-q2u6n6 , aspor-q2u7i2 , aspor-q2u7v0 , aspor-q2u8j8 , aspor-q2u8r1 , aspor-q2u8r4 , aspor-q2u8t5 , aspor-q2u8z3 , aspor-q2u9a1 , aspor-q2u9n5 , aspor-q2u144 , aspor-q2u161 , aspor-q2u185 , aspor-q2u199 , aspor-q2u212 , aspor-q2u331 , aspor-q2u348 , aspor-q2u400 , aspor-q2u453 , aspor-q2u489 , aspor-q2u704 , aspor-q2u728 , aspor-q2u798 , aspor-q2u822 , aspor-q2u854 , aspor-q2u875 , aspor-q2u908 , aspor-q2ua10 , aspor-q2ua48 , aspor-q2uab6 , aspor-q2uak9 , aspor-q2uaq4 , aspor-q2ub32 , aspor-q2ub76 , aspor-q2uba1 , aspor-q2ubd6 , aspor-q2ubm2 , aspor-q2ubr2 , aspor-q2uc28 , aspor-q2uc65 , aspor-q2uc77 , aspor-q2uc98 , aspor-q2uck0 , aspor-q2ucy7 , aspor-q2ud03 , aspor-q2ud06 , aspor-q2ud08 , aspor-q2ud23 , aspor-q2udn5 , aspor-q2udr0 , aspor-q2uec1 , aspor-q2uef3 , aspor-q2uf10 , aspor-q2uf27 , aspor-q2uf48 , aspor-q2ufd8 , aspor-q2ufe5 , aspor-q2ufm4 , aspor-q2ufr3 , aspor-q2ufz8 , aspor-q2ug78 , aspor-q2ugd6 , aspor-q2uge1 , aspor-q2ugg7 , aspor-q2ugi2 , aspor-q2ugl2 , aspor-q2ugy9 , aspor-q2uh24 , aspor-q2uh73 , aspor-q2uhe4 , aspor-q2uhf0 , aspor-q2uhj6 , aspor-q2uhn1 , aspor-q2uhq0 , aspor-q2ui56 , aspor-q2uib2 , aspor-q2uib5 , aspor-q2uie9 , aspor-q2uih1 , aspor-q2uii1 , aspor-q2uik9 , aspor-q2uiq0 , aspor-q2uiu1 , aspor-q2uix9 , aspor-q2uiy5 , aspor-q2uiz4 , aspor-q2uj89 , aspor-q2uja2 , aspor-q2uju3 , aspor-q2uk31 , aspor-q2uk42 , aspor-q2ukb6 , aspor-q2ukq7 , aspor-q2ul81 , aspor-q2uli9 , aspor-q2ulr2 , aspor-q2ulv7 , aspor-q2umf3 , aspor-q2umv2 , aspor-q2umx6 , aspor-q2unw5 , aspor-q2up23 , aspor-q2up89 , aspor-q2upe6 , aspor-q2upi1 , aspor-q2upl1 , aspor-q2upw4 , aspor-q2uq56 , aspor-q2uqb4 , aspor-q2uqm7 , aspor-q2ur58 , aspor-q2ur64 , aspor-q2ur80 , aspor-q2ur83 , aspor-q2ure7 , aspor-q2urf3 , aspor-q2urg5 , aspor-q2urq0 , aspor-q2urt4 , aspor-q2uru5 , aspor-q2usi0 , aspor-q2usp7 , aspor-q2usq8 , aspor-q2usv6 , aspor-q2uta5 , aspor-q2uu89 , aspor-q2uub4 , aspor-q2uux8 , aspor-q2uv29 , aspor-TGLA , aspor-q2ue03 , aspor-q2uj83 , aspno-a0a0l1j1c9

Related information

Gene_locus aspor-Q2U722    aspfn-b8mvx2    aspfn-b8mwk1    aspfn-b8n1a4    aspfn-b8n5l3    aspfn-b8n7y0    aspfn-b8n829    aspfn-b8ncj5    aspfn-b8nhj9    aspfn-b8njx6    aspfn-b8nsk2    aspfu-q4wj61    aspor-axe1    aspor-CPI    aspor-cutas    aspor-cuti2    aspor-DPPIV    aspor-faec    aspor-MDLB    aspor-ppme1    aspor-q2tw11    aspor-q2tw16    aspor-q2tw28    aspor-q2twc4    aspor-q2twg0    aspor-q2twj3    aspor-q2twv2    aspor-q2twv4    aspor-q2tx21    aspor-q2txq8    aspor-q2tya1    aspor-q2tyh6    aspor-q2tyn9    aspor-q2typ0    aspor-q2tyq4    aspor-q2tyv8    aspor-q2tz03    aspor-q2tzh3    aspor-q2tzr5    aspor-q2tzv9    aspor-q2u0k7    aspor-q2u0q2    aspor-q2u0r6    aspor-q2u1a5    aspor-q2u1a6    aspor-q2u1k0    aspor-q2u1k8    aspor-q2u1m8    aspor-q2u2a1    aspor-q2u2a4    aspor-q2u3a3    aspor-q2u3a6    aspor-q2u3k5    aspor-q2u3l6    aspor-q2u4a0    aspor-q2u4e0    aspor-q2u4f6    aspor-q2u4g6    aspor-q2u4h9    aspor-q2u4w9    aspor-q2u4y8    aspor-q2u5f5    aspor-q2u5n3    aspor-q2u5y8    aspor-q2u6h7    aspor-q2u6j5    aspor-q2u6m8    aspor-q2u6m9    aspor-q2u6n6    aspor-q2u7i2    aspor-q2u7v0    aspor-q2u8j8    aspor-q2u8r1    aspor-q2u8r4    aspor-q2u8t5    aspor-q2u8z3    aspor-q2u9a1    aspor-q2u9n5    aspor-q2u144    aspor-q2u161    aspor-q2u185    aspor-q2u199    aspor-q2u212    aspor-q2u331    aspor-q2u348    aspor-q2u400    aspor-q2u453    aspor-q2u489    aspor-q2u704    aspor-q2u728    aspor-q2u798    aspor-q2u822    aspor-q2u854    aspor-q2u875    aspor-q2u908    aspor-q2ua10    aspor-q2ua48    aspor-q2uab6    aspor-q2uak9    aspor-q2uaq4    aspor-q2ub32    aspor-q2ub76    aspor-q2uba1    aspor-q2ubd6    aspor-q2ubm2    aspor-q2ubr2    aspor-q2uc28    aspor-q2uc65    aspor-q2uc77    aspor-q2uc98    aspor-q2uck0    aspor-q2ucy7    aspor-q2ud03    aspor-q2ud06    aspor-q2ud08    aspor-q2ud23    aspor-q2udn5    aspor-q2udr0    aspor-q2uec1    aspor-q2uef3    aspor-q2uf10    aspor-q2uf27    aspor-q2uf48    aspor-q2ufd8    aspor-q2ufe5    aspor-q2ufm4    aspor-q2ufr3    aspor-q2ufz8    aspor-q2ug78    aspor-q2ugd6    aspor-q2uge1    aspor-q2ugg7    aspor-q2ugi2    aspor-q2ugl2    aspor-q2ugy9    aspor-q2uh24    aspor-q2uh73    aspor-q2uhe4    aspor-q2uhf0    aspor-q2uhj6    aspor-q2uhn1    aspor-q2uhq0    aspor-q2ui56    aspor-q2uib2    aspor-q2uib5    aspor-q2uie9    aspor-q2uih1    aspor-q2uii1    aspor-q2uik9    aspor-q2uiq0    aspor-q2uiu1    aspor-q2uix9    aspor-q2uiy5    aspor-q2uiz4    aspor-q2uj89    aspor-q2uja2    aspor-q2uju3    aspor-q2uk31    aspor-q2uk42    aspor-q2ukb6    aspor-q2ukq7    aspor-q2ul81    aspor-q2uli9    aspor-q2ulr2    aspor-q2ulv7    aspor-q2umf3    aspor-q2umv2    aspor-q2umx6    aspor-q2unw5    aspor-q2up23    aspor-q2up89    aspor-q2upe6    aspor-q2upi1    aspor-q2upl1    aspor-q2upw4    aspor-q2uq56    aspor-q2uqb4    aspor-q2uqm7    aspor-q2ur58    aspor-q2ur64    aspor-q2ur80    aspor-q2ur83    aspor-q2ure7    aspor-q2urf3    aspor-q2urg5    aspor-q2urq0    aspor-q2urt4    aspor-q2uru5    aspor-q2usi0    aspor-q2usp7    aspor-q2usq8    aspor-q2usv6    aspor-q2uta5    aspor-q2uu89    aspor-q2uub4    aspor-q2uux8    aspor-q2uv29    aspor-TGLA    aspor-q2ue03    aspor-q2uj83    aspno-a0a0l1j1c9
Gene_locus_frgt aspfn-b8nyd6    aspor-q2tw07    aspor-q2twg2    aspor-q2txd8    aspor-q2txl0    aspor-q2txp5    aspor-q2tzr2    aspor-q2u0p5    aspor-q2u0p7    aspor-q2u0x9    aspor-q2u1n2    aspor-q2u4u6    aspor-q2u133    aspor-q2u135    aspor-q2u136    aspor-q2u145    aspor-q2u211    aspor-q2u277    aspor-q2ufi3    aspfn-B8N2U3    aspor-q2ukd7    aspor-q2us15    aspor-q2uty4

Citations formats

Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H (2005)
Genome sequencing and analysis of Aspergillus oryzae
Nature 438 :1157

Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H (2005)
Nature 438 :1157