Makarova_2006_Proc.Natl.Acad.Sci.U.S.A_103_15611

Reference

Title : Comparative genomics of the lactic acid bacteria - Makarova_2006_Proc.Natl.Acad.Sci.U.S.A_103_15611
Author(s) : Makarova K , Slesarev A , Wolf Y , Sorokin A , Mirkin B , Koonin E , Pavlov A , Pavlova N , Karamychev V , Polouchine N , Shakhova V , Grigoriev I , Lou Y , Rohksar D , Lucas S , Huang K , Goodstein DM , Hawkins T , Plengvidhya V , Welker D , Hughes J , Goh Y , Benson A , Baldwin K , Lee JH , Diaz-Muniz I , Dosti B , Smeianov V , Wechter W , Barabote R , Lorca G , Altermann E , Barrangou R , Ganesan B , Xie Y , Rawsthorne H , Tamir D , Parker C , Breidt F , Broadbent J , Hutkins R , O'Sullivan D , Steele J , Unlu G , Saier M , Klaenhammer T , Richardson P , Kozyavkin S , Weimer B , Mills D
Ref : Proc Natl Acad Sci U S A , 103 :15611 , 2006
Abstract :

Lactic acid-producing bacteria are associated with various plant and animal niches and play a key role in the production of fermented foods and beverages. We report nine genome sequences representing the phylogenetic and functional diversity of these bacteria. The small genomes of lactic acid bacteria encode a broad repertoire of transporters for efficient carbon and nitrogen acquisition from the nutritionally rich environments they inhabit and reflect a limited range of biosynthetic capabilities that indicate both prototrophic and auxotrophic strains. Phylogenetic analyses, comparison of gene content across the group, and reconstruction of ancestral gene sets indicate a combination of extensive gene loss and key gene acquisitions via horizontal gene transfer during the coevolution of lactic acid bacteria with their habitats.

PubMedSearch : Makarova_2006_Proc.Natl.Acad.Sci.U.S.A_103_15611
PubMedID: 17030793
Gene_locus related to this paper: 9laco-c0xef2 , lacba-pepx , lacba-q03pm4 , lacba-q03sl1 , lacc3-pepx , lacc3-q03b36 , lacc3-q033u9 , lacc3-q035l1 , lacc3-q036j3 , lacc3-q036j8 , laccb-b3wcx2 , lacda-q1g8l1 , lacdb-q04b33 , lacdb-q04bn2 , lacdb-q04ci8 , lacdb-q04cw3 , lacdl-pepx , lacdl-pip , lacga-q040j4 , lacga-q040j9 , lacga-q040s2 , lacga-q042h9 , lacga-q043a3 , lacga-q043m1 , lacga-q045l3 , lacga-q046w1 , lacga-q047a5 , lacjo-q74hh0 , lacjo-q74ii3 , lacla-pepx , laclk-d2bl62 , lacls-q02y15 , lacls-q030e4 , lacls-q030p2 , lacrh-pepr , leumc-c2kjv5 , leumm-q03x93 , leumm-q03y60 , leumm-q03y71 , leumm-q03z72 , oenob-q04d10 , oenob-q04f06 , oenob-q04f19 , oenob-q04fw8 , oenob-q04ga3 , oenob-q04h47 , oenoe-a0nif9 , oenoe-a0nl98 , oenoe-d3lb54 , pedpa-pepx , pedpa-q03gh4 , pedpa-q03h47 , pedpa-q03hj2 , strt1-q5lz16 , strt1-q5lza1 , strt2-q5m420 , strtr-pepx , oenoe-k6pl10 , lacba-pip , lacca-k0n1x0 , lacpa-s2ter8 , lacpa-s2rz88 , pedpa-q03hz6 , oenob-q04dp7

Related information

Gene_locus 9laco-c0xef2    lacba-pepx    lacba-q03pm4    lacba-q03sl1    lacc3-pepx    lacc3-q03b36    lacc3-q033u9    lacc3-q035l1    lacc3-q036j3    lacc3-q036j8    laccb-b3wcx2    lacda-q1g8l1    lacdb-q04b33    lacdb-q04bn2    lacdb-q04ci8    lacdb-q04cw3    lacdl-pepx    lacdl-pip    lacga-q040j4    lacga-q040j9    lacga-q040s2    lacga-q042h9    lacga-q043a3    lacga-q043m1    lacga-q045l3    lacga-q046w1    lacga-q047a5    lacjo-q74hh0    lacjo-q74ii3    lacla-pepx    laclk-d2bl62    lacls-q02y15    lacls-q030e4    lacls-q030p2    lacrh-pepr    leumc-c2kjv5    leumm-q03x93    leumm-q03y60    leumm-q03y71    leumm-q03z72    oenob-q04d10    oenob-q04f06    oenob-q04f19    oenob-q04fw8    oenob-q04ga3    oenob-q04h47    oenoe-a0nif9    oenoe-a0nl98    oenoe-d3lb54    pedpa-pepx    pedpa-q03gh4    pedpa-q03h47    pedpa-q03hj2    strt1-q5lz16    strt1-q5lza1    strt2-q5m420    strtr-pepx    oenoe-k6pl10    lacba-pip    lacca-k0n1x0    lacpa-s2ter8    lacpa-s2rz88    pedpa-q03hz6    oenob-q04dp7
Gene_locus_frgt 9laco-c0xef2    lacba-pepx    lacba-q03pm4    lacba-q03sl1    lacc3-pepx    lacc3-q03b36    lacc3-q033u9    lacc3-q035l1    lacc3-q036j3    lacc3-q036j8    laccb-b3wcx2    lacda-q1g8l1    lacdb-q04b33    lacdb-q04bn2    lacdb-q04ci8    lacdb-q04cw3    lacdl-pepx    lacdl-pip    lacga-q040j4    lacga-q040j9    lacga-q040s2    lacga-q042h9    lacga-q043a3    lacga-q043m1    lacga-q045l3    lacga-q046w1    lacga-q047a5    lacjo-q74hh0    lacjo-q74ii3    lacla-pepx    laclk-d2bl62    lacls-q02y15    lacls-q030e4    lacls-q030p2    lacrh-pepr    leumc-c2kjv5    leumm-q03x93    leumm-q03y60    leumm-q03y71    leumm-q03z72    oenob-q04d10    oenob-q04f06    oenob-q04f19    oenob-q04fw8    oenob-q04ga3    oenob-q04h47    oenoe-a0nif9    oenoe-a0nl98    oenoe-d3lb54    pedpa-pepx    pedpa-q03gh4    pedpa-q03h47    pedpa-q03hj2    strt1-q5lz16    strt1-q5lza1    strt2-q5m420    strtr-pepx    oenoe-k6pl10    lacba-pip    lacca-k0n1x0    lacpa-s2ter8    lacpa-s2rz88    pedpa-q03hz6    oenob-q04dp7    strt1-q5m0p9

Citations formats

Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Diaz-Muniz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D (2006)
Comparative genomics of the lactic acid bacteria
Proc Natl Acad Sci U S A 103 :15611

Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Diaz-Muniz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D (2006)
Proc Natl Acad Sci U S A 103 :15611