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References (30)

Title : Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34 - Anderson_2016_Stand.Genomic.Sci_11_70
Author(s) : Anderson IJ , DasSarma P , Lucas S , Copeland A , Lapidus A , Del Rio TG , Tice H , Dalin E , Bruce DC , Goodwin L , Pitluck S , Sims D , Brettin TS , Detter JC , Han CS , Larimer F , Hauser L , Land M , Ivanova N , Richardson P , Cavicchioli R , DasSarma S , Woese CR , Kyrpides NC
Ref : Stand Genomic Sci , 11 :70 , 2016
Abstract :
PubMedSearch : Anderson_2016_Stand.Genomic.Sci_11_70
PubMedID: 27617060
Gene_locus related to this paper: hallt-metxa

Title : Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds - Hwang_2016_Genome.Announc_4_e01226
Author(s) : Hwang C , Copeland A , Lucas S , Lapidus A , Barry K , Detter JC , Glavina Del Rio T , Hammon N , Israni S , Dalin E , Tice H , Pitluck S , Chertkov O , Brettin T , Bruce D , Han C , Schmutz J , Larimer F , Land ML , Hauser L , Kyrpides N , Mikhailova N , Ye Q , Zhou J , Richardson P , Fields MW
Ref : Genome Announc , 4 : , 2016
Abstract :
PubMedSearch : Hwang_2016_Genome.Announc_4_e01226
PubMedID: 27811105
Gene_locus related to this paper: alkmq-a6tu78

Title : Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)) - Meincke_2012_Stand.Genomic.Sci_6_74
Author(s) : Meincke L , Copeland A , Lapidus A , Lucas S , Berry KW , Del Rio TG , Hammon N , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin L , Han C , Tapia R , Detter JC , Schmutz J , Brettin T , Larimer F , Land M , Hauser L , Kyrpides NC , Ivanova N , Goker M , Woyke T , Wu QL , Pockl M , Hahn MW , Klenk HP
Ref : Stand Genomic Sci , 6 :74 , 2012
Abstract :
PubMedSearch : Meincke_2012_Stand.Genomic.Sci_6_74
PubMedID: 22675600
Gene_locus related to this paper: polsq-a4sxg1 , polsq-a4sxf4

Title : Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)) - Kappler_2012_Stand.Genomic.Sci_7_44
Author(s) : Kappler U , Davenport K , Beatson S , Lucas S , Lapidus A , Copeland A , Berry KW , Glavina Del Rio T , Hammon N , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin LA , Han C , Tapia R , Detter JC , Chang YJ , Jeffries CD , Land M , Hauser L , Kyrpides NC , Goker M , Ivanova N , Klenk HP , Woyke T
Ref : Stand Genomic Sci , 7 :44 , 2012
Abstract :
PubMedSearch : Kappler_2012_Stand.Genomic.Sci_7_44
PubMedID: 23450099
Gene_locus related to this paper: stand-d7a8r1

Title : Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614 - Coleman_2011_J.Bacteriol_193_3399
Author(s) : Coleman NV , Wilson NL , Barry K , Brettin TS , Bruce DC , Copeland A , Dalin E , Detter JC , Del Rio TG , Goodwin LA , Hammon NM , Han S , Hauser LJ , Israni S , Kim E , Kyrpides N , Land ML , Lapidus A , Larimer FW , Lucas S , Pitluck S , Richardson P , Schmutz J , Tapia R , Thompson S , Tice HN , Spain JC , Gossett JG , Mattes TE
Ref : Journal of Bacteriology , 193 :3399 , 2011
Abstract :
PubMedSearch : Coleman_2011_J.Bacteriol_193_3399
PubMedID: 21551312
Gene_locus related to this paper: nocsj-a1sil5

Title : Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)) - Kiss_2011_Stand.Genomic.Sci_5_356
Author(s) : Kiss H , Nett M , Domin N , Martin K , Maresca JA , Copeland A , Lapidus A , Lucas S , Berry KW , Glavina Del Rio T , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin L , Han C , Detter JC , Schmutz J , Brettin T , Land M , Hauser L , Kyrpides NC , Ivanova N , Goker M , Woyke T , Klenk HP , Bryant DA
Ref : Stand Genomic Sci , 5 :356 , 2011
Abstract :
PubMedSearch : Kiss_2011_Stand.Genomic.Sci_5_356
PubMedID: 22675585
Gene_locus related to this paper: hera2-a9b061

Title : The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth - Ayala-del-Rio_2010_Appl.Environ.Microbiol_76_2304
Author(s) : Ayala-del-Rio HL , Chain PS , Grzymski JJ , Ponder MA , Ivanova N , Bergholz PW , Di Bartolo G , Hauser L , Land M , Bakermans C , Rodrigues D , Klappenbach J , Zarka D , Larimer F , Richardson P , Murray A , Thomashow M , Tiedje JM
Ref : Applied Environmental Microbiology , 76 :2304 , 2010
Abstract :
PubMedSearch : Ayala-del-Rio_2010_Appl.Environ.Microbiol_76_2304
PubMedID: 20154119
Gene_locus related to this paper: psya2-q4fu78 , psya2-q4fvr2

Title : Complete genome sequence of Methanocorpusculum labreanum type strain Z - Anderson_2009_Stand.Genomic.Sci_1_197
Author(s) : Anderson IJ , Sieprawska-Lupa M , Goltsman E , Lapidus A , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Barry K , Pitluck S , Hauser L , Land M , Lucas S , Richardson P , Whitman WB , Kyrpides NC
Ref : Stand Genomic Sci , 1 :197 , 2009
Abstract :
PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_197
PubMedID: 21304657
Gene_locus related to this paper: metlz-a2sqw3 , metlz-a2su60 , metlz-a2su61 , metlz-a2su62

Title : Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1 - Anderson_2009_Stand.Genomic.Sci_1_189
Author(s) : Anderson IJ , Sieprawska-Lupa M , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Barry K , Saunders E , Han C , Brettin T , Detter JC , Bruce D , Mikhailova N , Pitluck S , Hauser L , Land M , Lucas S , Richardson P , Whitman WB , Kyrpides NC
Ref : Stand Genomic Sci , 1 :189 , 2009
Abstract :
PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_189
PubMedID: 21304656

Title : Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1 - Anderson_2009_Stand.Genomic.Sci_1_183
Author(s) : Anderson IJ , Sun H , Lapidus A , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Lucas S , Barry K , Land M , Richardson P , Huber H , Kyrpides NC
Ref : Stand Genomic Sci , 1 :183 , 2009
Abstract :
PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_183
PubMedID: 21304655

Title : Extending the Bacillus cereus group genomics to putative food-borne pathogens of different toxicity - Lapidus_2008_Chem.Biol.Interact_171_236
Author(s) : Lapidus A , Goltsman E , Auger S , Galleron N , Segurens B , Dossat C , Land ML , Broussolle V , Brillard J , Guinebretiere MH , Sanchis V , Nguen-The C , Lereclus D , Richardson P , Wincker P , Weissenbach J , Ehrlich SD , Sorokin A
Ref : Chemico-Biological Interactions , 171 :236 , 2008
Abstract :
PubMedSearch : Lapidus_2008_Chem.Biol.Interact_171_236
PubMedID: 17434157
Gene_locus related to this paper: bacwk-A9VF42 , bacan-BA0954 , bacan-BA5009 , bacan-DHBF , bacce-BC0192 , bacce-BC2141 , bacce-BC2171 , bacce-BC2458 , bacce-BC3133 , bacce-BC4862 , bacce-BC5130 , bacce-c2zq05 , bacce-c2zsv2 , bacce-lipP , bacce-PHAC , bacce-q2edm4 , bacce-q72yu1 , baccn-a7gmc0 , baccn-a7gmj8 , baccn-a7gnr6 , baccn-a7gpf9 , baccn-a7gpl4 , baccn-a7gpr3 , baccn-a7gqf9 , baccn-a7gr85 , baccn-a7gsc6 , baccn-a7gse0 , baccn-a7gt87 , baccn-a7gu34 , baccn-a7gu90 , baccn-a7guq6 , baccr-pepx , bacmy-c3aae7 , bactu-c3ice0 , bacwk-a9vg55 , bacwk-a9vgr5 , bacwk-a9vju9 , bacwk-a9vkh7 , bacwk-a9vm76 , bacwk-a9vql0 , bacwk-a9vqm8 , bacwk-a9vtw7 , bacwk-a9vv54 , baccn-a7gp74

Title : Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) - Martinez_2008_Nat.Biotechnol_26_553
Author(s) : Martinez D , Berka RM , Henrissat B , Saloheimo M , Arvas M , Baker SE , Chapman J , Chertkov O , Coutinho PM , Cullen D , Danchin EG , Grigoriev IV , Harris P , Jackson M , Kubicek CP , Han CS , Ho I , Larrondo LF , de Leon AL , Magnuson JK , Merino S , Misra M , Nelson B , Putnam N , Robbertse B , Salamov AA , Schmoll M , Terry A , Thayer N , Westerholm-Parvinen A , Schoch CL , Yao J , Barabote R , Nelson MA , Detter C , Bruce D , Kuske CR , Xie G , Richardson P , Rokhsar DS , Lucas SM , Rubin EM , Dunn-Coleman N , Ward M , Brettin TS
Ref : Nat Biotechnol , 26 :553 , 2008
Abstract :
PubMedSearch : Martinez_2008_Nat.Biotechnol_26_553
PubMedID: 18454138
Gene_locus related to this paper: hypjq-g0rh85 , hypjq-cip2 , hypjq-g0r9d1 , hypjq-g0r810 , hypjq-g0rbm4 , hypjq-g0rez4 , hypjq-g0rfr3 , hypjq-g0rg60 , hypjq-g0rij9 , hypjq-g0riu1 , hypjq-g0rl87 , hypjq-g0rlh4 , hypjq-g0rme5 , hypjq-g0rwy5 , hypje-axylest , hypje-q7z9m3 , hypjq-g0r6x2 , hypje-a0a024s1b8 , hypjr-a0a024s1s9 , hypjq-g0rxi5

Title : A korarchaeal genome reveals insights into the evolution of the Archaea - Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102
Author(s) : Elkins JG , Podar M , Graham DE , Makarova KS , Wolf Y , Randau L , Hedlund BP , Brochier-Armanet C , Kunin V , Anderson I , Lapidus A , Goltsman E , Barry K , Koonin EV , Hugenholtz P , Kyrpides N , Wanner G , Richardson P , Keller M , Stetter KO
Ref : Proc Natl Acad Sci U S A , 105 :8102 , 2008
Abstract :
PubMedSearch : Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102
PubMedID: 18535141

Title : Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia - Giraud_2007_Science_316_1307
Author(s) : Giraud E , Moulin L , Vallenet D , Barbe V , Cytryn E , Avarre JC , Jaubert M , Simon D , Cartieaux F , Prin Y , Bena G , Hannibal L , Fardoux J , Kojadinovic M , Vuillet L , Lajus A , Cruveiller S , Rouy Z , Mangenot S , Segurens B , Dossat C , Franck WL , Chang WS , Saunders E , Bruce D , Richardson P , Normand P , Dreyfus B , Pignol D , Stacey G , Emerich D , Vermeglio A , Medigue C , Sadowsky M
Ref : Science , 316 :1307 , 2007
Abstract :
PubMedSearch : Giraud_2007_Science_316_1307
PubMedID: 17540897
Gene_locus related to this paper: brasb-a5e8s7 , brasb-a5e9h9 , brasb-a5e9x2 , brasb-a5eac3 , brasb-a5eb24 , brasb-a5ech6 , brasb-a5eck9 , brasb-a5ed44 , brasb-a5edz7 , brasb-a5ee62 , brasb-a5ees1 , brasb-a5ef53 , brasb-a5efp3 , brasb-a5efp4 , brasb-a5eg29 , brasb-a5eh09 , brasb-a5ei81 , brasb-a5eiy7 , brasb-a5ej26 , brasb-a5ek41 , brasb-a5elh0 , brasb-a5ema7 , brasb-a5emc8 , brasb-a5eml7 , brasb-a5ene5 , brasb-a5ent6 , brasb-a5eny8 , brasb-a5ep81 , brasb-a5eph8 , brasb-a5epv4 , brasb-a5epx9 , brasb-a5eqb3 , brasb-a5erc8 , brasb-a5esb1 , brasb-a5ese9 , brasb-a5esl7 , brasb-a5esv5 , brasb-a5esw6 , brasb-a5etk7 , brasb-a5eul1 , braso-a4yk16 , braso-a4yl66 , braso-a4ylm4 , braso-a4ylr9 , braso-a4ylx7 , braso-a4ymj8 , braso-a4ynl1 , braso-a4ypd9 , braso-a4yqh3 , braso-a4yr10 , braso-a4yri0 , braso-a4yt56 , braso-a4yul4 , braso-a4yw76 , braso-a4ywb6 , braso-a4yxg2 , braso-a4yy49 , braso-a4yyj6 , braso-a4yzd7 , braso-a4yzh0 , braso-a4z0q9 , braso-a4z0v7 , braso-a4z1h1 , braso-a4z1p1 , braso-a4z1p8 , braso-a4z1v6 , braso-a4z2a5 , braso-a4z152 , braso-a4yl32 , brasb-a5et63 , brasb-a5emr8 , braso-a4ynl2 , brasb-a5eqb2 , braso-a4yr63

Title : Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX - Lykidis_2007_J.Bacteriol_189_2477
Author(s) : Lykidis A , Mavromatis K , Ivanova N , Anderson I , Land M , DiBartolo G , Martinez M , Lapidus A , Lucas S , Copeland A , Richardson P , Wilson DB , Kyrpides N
Ref : Journal of Bacteriology , 189 :2477 , 2007
Abstract :
PubMedSearch : Lykidis_2007_J.Bacteriol_189_2477
PubMedID: 17209016
Gene_locus related to this paper: thefu-q6a0i3 , thefy-q47l17 , thefy-q47p38 , thefy-q47pm5

Title : Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria - Lo_2007_Nature_446_537
Author(s) : Lo I , Denef VJ , VerBerkmoes NC , Shah MB , Goltsman D , DiBartolo G , Tyson GW , Allen EE , Ram RJ , Detter JC , Richardson P , Thelen MP , Hettich RL , Banfield JF
Ref : Nature , 446 :537 , 2007
Abstract :
PubMedSearch : Lo_2007_Nature_446_537
PubMedID: 17344860

Title : Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii - Xie_2007_Appl.Environ.Microbiol_73_3536
Author(s) : Xie G , Bruce DC , Challacombe JF , Chertkov O , Detter JC , Gilna P , Han CS , Lucas S , Misra M , Myers GL , Richardson P , Tapia R , Thayer N , Thompson LS , Brettin TS , Henrissat B , Wilson DB , McBride MJ
Ref : Applied Environmental Microbiology , 73 :3536 , 2007
Abstract :
PubMedSearch : Xie_2007_Appl.Environ.Microbiol_73_3536
PubMedID: 17400776
Gene_locus related to this paper: cyth3-q11pu3 , cyth3-q11rb1 , cyth3-q11sp5 , cyth3-q11sp6 , cyth3-q11ty5 , cyth3-q11vh6 , cyth3-q11vj5 , cyth3-q11w17 , cyth3-q11xy0

Title : Patterns and implications of gene gain and loss in the evolution of Prochlorococcus - Kettler_2007_PLoS.Genet_3_e231
Author(s) : Kettler GC , Martiny AC , Huang K , Zucker J , Coleman ML , Rodrigue S , Chen F , Lapidus A , Ferriera S , Johnson J , Steglich C , Church GM , Richardson P , Chisholm SW
Ref : PLoS Genet , 3 :e231 , 2007
Abstract :
PubMedSearch : Kettler_2007_PLoS.Genet_3_e231
PubMedID: 18159947
Gene_locus related to this paper: prom1-a2c3n7 , prom1-a2c150 , prom1-a2c179 , prom2-a8g5b6 , prom2-a8g5t3 , prom3-a2c804 , prom3-a2cas9 , prom4-a9b9z4 , prom4-a9bb64 , prom4-a9bbd7 , prom5-a2bvt3 , prom5-a2bx34 , prom9-q31br4 , prom9-q31ch4 , promr-b9p0y6 , promm-q7v6l0 , promm-q7v8g2 , proms-a2brm5 , proms-a2bs42 , promt-q46jt5 , promt-q46jy1 , promt-q46kg4 , prom0-a3pbw6 , proms-a2bq73 , prom3-a2cay5 , prom5-a2buz4 , prom2-a8g328 , prom3-a2ce38

Title : Fatty acid amide hydrolase inhibitors display broad selectivity and inhibit multiple carboxylesterases as off-targets - Zhang_2007_Neuropharmacol_52_1095
Author(s) : Zhang D , Saraf A , Kolasa T , Bhatia P , Zheng GZ , Patel M , Lannoye GS , Richardson P , Stewart A , Rogers JC , Brioni JD , Surowy CS
Ref : Neuropharmacology , 52 :1095 , 2007
Abstract :
PubMedSearch : Zhang_2007_Neuropharmacol_52_1095
PubMedID: 17217969

Title : Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd - Challacombe_2007_J.Bacteriol_189_1890
Author(s) : Challacombe JF , Duncan AJ , Brettin TS , Bruce D , Chertkov O , Detter JC , Han CS , Misra M , Richardson P , Tapia R , Thayer N , Xie G , Inzana TJ
Ref : Journal of Bacteriology , 189 :1890 , 2007
Abstract :
PubMedSearch : Challacombe_2007_J.Bacteriol_189_1890
PubMedID: 17172329
Gene_locus related to this paper: haes1-q0i317 , haes1-q0i470 , haes2-b0utw7 , haes2-b0uvn0 , haes2-b0uwc2

Title : The complete genome sequence of Bacillus thuringiensis Al Hakam - Challacombe_2007_J.Bacteriol_189_3680
Author(s) : Challacombe JF , Altherr MR , Xie G , Bhotika SS , Brown N , Bruce D , Campbell CS , Campbell ML , Chen J , Chertkov O , Cleland C , Dimitrijevic M , Doggett NA , Fawcett JJ , Glavina T , Goodwin LA , Green LD , Han CS , Hill KK , Hitchcock P , Jackson PJ , Keim P , Kewalramani AR , Longmire J , Lucas S , Malfatti S , Martinez D , McMurry K , Meincke LJ , Misra M , Moseman BL , Mundt M , Munk AC , Okinaka RT , Parson-Quintana B , Reilly LP , Richardson P , Robinson DL , Saunders E , Tapia R , Tesmer JG , Thayer N , Thompson LS , Tice H , Ticknor LO , Wills PL , Gilna P , Brettin TS
Ref : Journal of Bacteriology , 189 :3680 , 2007
Abstract :
PubMedSearch : Challacombe_2007_J.Bacteriol_189_3680
PubMedID: 17337577
Gene_locus related to this paper: bacah-a0rcd1 , bacah-a0rer5 , bacah-a0rev7 , bacan-BA1019 , bacan-BA1242 , bacan-BA2392 , bacan-BA2607 , bacan-BA3343 , bacan-BA3863 , bacan-BA3877 , bacan-BA4324 , bacan-BA4338 , bacan-BA4577 , bacan-BA5009 , bacan-BA5110 , bacan-BA5136 , bacan-DHBF , bacc1-q73a27 , bacc1-q73c93 , bacce-BC0192 , bacce-BC1788 , bacce-BC1954 , bacce-BC2141 , bacce-BC2171 , bacce-BC4730 , bacce-BC4862 , bacce-BC5130 , bacce-PHAC , bacce-q72yu1 , baccr-pepx , bachk-q6hcl3 , bachk-q6hgn4 , bachk-q6hgp9 , bachk-q6hig3 , bachk-q6hit8

Title : Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis - Han_2006_J.Bacteriol_188_3382
Author(s) : Han CS , Xie G , Challacombe JF , Altherr MR , Bhotika SS , Brown N , Bruce D , Campbell CS , Campbell ML , Chen J , Chertkov O , Cleland C , Dimitrijevic M , Doggett NA , Fawcett JJ , Glavina T , Goodwin LA , Green LD , Hill KK , Hitchcock P , Jackson PJ , Keim P , Kewalramani AR , Longmire J , Lucas S , Malfatti S , McMurry K , Meincke LJ , Misra M , Moseman BL , Mundt M , Munk AC , Okinaka RT , Parson-Quintana B , Reilly LP , Richardson P , Robinson DL , Rubin E , Saunders E , Tapia R , Tesmer JG , Thayer N , Thompson LS , Tice H , Ticknor LO , Wills PL , Brettin TS , Gilna P
Ref : Journal of Bacteriology , 188 :3382 , 2006
Abstract :
PubMedSearch : Han_2006_J.Bacteriol_188_3382
PubMedID: 16621833
Gene_locus related to this paper: bacan-BA0954 , bacan-BA2607 , bacce-BC0968 , bacce-BC3133 , bacce-BC5130 , bacce-c2mr40 , baccz-q63gk2

Title : Comparative genomics of the lactic acid bacteria - Makarova_2006_Proc.Natl.Acad.Sci.U.S.A_103_15611
Author(s) : Makarova K , Slesarev A , Wolf Y , Sorokin A , Mirkin B , Koonin E , Pavlov A , Pavlova N , Karamychev V , Polouchine N , Shakhova V , Grigoriev I , Lou Y , Rohksar D , Lucas S , Huang K , Goodstein DM , Hawkins T , Plengvidhya V , Welker D , Hughes J , Goh Y , Benson A , Baldwin K , Lee JH , Diaz-Muniz I , Dosti B , Smeianov V , Wechter W , Barabote R , Lorca G , Altermann E , Barrangou R , Ganesan B , Xie Y , Rawsthorne H , Tamir D , Parker C , Breidt F , Broadbent J , Hutkins R , O'Sullivan D , Steele J , Unlu G , Saier M , Klaenhammer T , Richardson P , Kozyavkin S , Weimer B , Mills D
Ref : Proc Natl Acad Sci U S A , 103 :15611 , 2006
Abstract :
PubMedSearch : Makarova_2006_Proc.Natl.Acad.Sci.U.S.A_103_15611
PubMedID: 17030793
Gene_locus related to this paper: 9laco-c0xef2 , lacba-pepx , lacba-q03pm4 , lacba-q03sl1 , lacc3-pepx , lacc3-q03b36 , lacc3-q033u9 , lacc3-q035l1 , lacc3-q036j3 , lacc3-q036j8 , laccb-b3wcx2 , lacda-q1g8l1 , lacdb-q04b33 , lacdb-q04bn2 , lacdb-q04ci8 , lacdb-q04cw3 , lacdl-pepx , lacdl-pip , lacga-q040j4 , lacga-q040j9 , lacga-q040s2 , lacga-q042h9 , lacga-q043a3 , lacga-q043m1 , lacga-q045l3 , lacga-q046w1 , lacga-q047a5 , lacjo-q74hh0 , lacjo-q74ii3 , lacla-pepx , laclk-d2bl62 , lacls-q02y15 , lacls-q030e4 , lacls-q030p2 , lacrh-pepr , leumc-c2kjv5 , leumm-q03x93 , leumm-q03y60 , leumm-q03y71 , leumm-q03z72 , oenob-q04d10 , oenob-q04f06 , oenob-q04f19 , oenob-q04fw8 , oenob-q04ga3 , oenob-q04h47 , oenoe-a0nif9 , oenoe-a0nl98 , oenoe-d3lb54 , pedpa-pepx , pedpa-q03gh4 , pedpa-q03h47 , pedpa-q03hj2 , strt1-q5lz16 , strt1-q5lza1 , strt2-q5m420 , strtr-pepx , oenoe-k6pl10 , lacba-pip , lacca-k0n1x0 , lacpa-s2ter8 , lacpa-s2rz88 , pedpa-q03hz6 , oenob-q04dp7

Title : The genome of black cottonwood, Populus trichocarpa (Torr. &\; Gray) - Tuskan_2006_Science_313_1596
Author(s) : Tuskan GA , Difazio S , Jansson S , Bohlmann J , Grigoriev I , Hellsten U , Putnam N , Ralph S , Rombauts S , Salamov A , Schein J , Sterck L , Aerts A , Bhalerao RR , Bhalerao RP , Blaudez D , Boerjan W , Brun A , Brunner A , Busov V , Campbell M , Carlson J , Chalot M , Chapman J , Chen GL , Cooper D , Coutinho PM , Couturier J , Covert S , Cronk Q , Cunningham R , Davis J , Degroeve S , Dejardin A , dePamphilis C , Detter J , Dirks B , Dubchak I , Duplessis S , Ehlting J , Ellis B , Gendler K , Goodstein D , Gribskov M , Grimwood J , Groover A , Gunter L , Hamberger B , Heinze B , Helariutta Y , Henrissat B , Holligan D , Holt R , Huang W , Islam-Faridi N , Jones S , Jones-Rhoades M , Jorgensen R , Joshi C , Kangasjarvi J , Karlsson J , Kelleher C , Kirkpatrick R , Kirst M , Kohler A , Kalluri U , Larimer F , Leebens-Mack J , Leple JC , Locascio P , Lou Y , Lucas S , Martin F , Montanini B , Napoli C , Nelson DR , Nelson C , Nieminen K , Nilsson O , Pereda V , Peter G , Philippe R , Pilate G , Poliakov A , Razumovskaya J , Richardson P , Rinaldi C , Ritland K , Rouze P , Ryaboy D , Schmutz J , Schrader J , Segerman B , Shin H , Siddiqui A , Sterky F , Terry A , Tsai CJ , Uberbacher E , Unneberg P , Vahala J , Wall K , Wessler S , Yang G , Yin T , Douglas C , Marra M , Sandberg G , Van de Peer Y , Rokhsar D
Ref : Science , 313 :1596 , 2006
Abstract :
PubMedSearch : Tuskan_2006_Science_313_1596
PubMedID: 16973872
Gene_locus related to this paper: burvg-a4jw31 , delas-a9c1v9 , poptr-a9pfp5 , poptr-a9ph43 , poptr-a9ph71 , poptr-a9pha7 , poptr-b9giq0 , poptr-b9gjs0 , poptr-b9gl72 , poptr-b9gmx8 , poptr-b9gnp9 , poptr-b9gny4 , poptr-b9grg2 , poptr-b9gsc2 , poptr-b9gvp3 , poptr-b9gvs3 , poptr-b9gwn9 , poptr-b9gy32 , poptr-b9gyq1 , poptr-b9gys8 , poptr-b9h0h0 , poptr-b9h4j2 , poptr-b9h6c2 , poptr-b9h6c5 , poptr-b9h6l8 , poptr-b9h8c9 , poptr-b9h301 , poptr-b9h579 , poptr-b9hbl2 , poptr-b9hbw5 , poptr-b9hcn9 , poptr-b9hee0 , poptr-b9hee2 , poptr-b9hee5 , poptr-b9hee6 , poptr-b9hef3 , poptr-b9hfa7 , poptr-b9hfd3 , poptr-b9hfi6 , poptr-b9hft8 , poptr-b9hg83 , poptr-b9hif5 , poptr-b9hll5 , poptr-b9hmd0 , poptr-b9hnv3 , poptr-b9hqr6 , poptr-b9hqr7 , poptr-b9hrv7 , poptr-b9hs66 , poptr-b9huf0 , poptr-b9hur3 , poptr-b9hux1 , poptr-b9hwp2 , poptr-b9hxr7 , poptr-b9hyk8 , poptr-b9hyx2 , poptr-b9i2q8 , poptr-b9i5b8 , poptr-b9i5j8 , poptr-b9i5j9 , poptr-b9i5k0 , poptr-b9i6b6 , poptr-b9i7b7 , poptr-b9i9p8 , poptr-b9i484 , poptr-b9i994 , poptr-b9ial3 , poptr-b9ial4 , poptr-b9ib28 , poptr-b9ibr8 , poptr-b9id97 , poptr-b9idr4 , poptr-b9iid9 , poptr-b9iip0 , poptr-b9ik80 , poptr-b9ik90 , poptr-b9il63 , poptr-b9ink7 , poptr-b9iqa0 , poptr-b9iqd5 , poptr-b9mwf1 , poptr-b9mwi8 , poptr-b9n0c6 , poptr-b9n0n1 , poptr-b9n0n4 , poptr-b9n0z5 , poptr-b9n1t8 , poptr-b9n1z3 , poptr-b9n3m7 , poptr-b9n233 , poptr-b9n236 , poptr-b9n395 , poptr-b9nd33 , poptr-b9nd34 , poptr-b9ndi6 , poptr-b9ndj5 , poptr-b9p9i8 , poptr-a9pfa7 , poptr-b9hdp2 , poptr-b9inj0 , poptr-b9n5g7 , poptr-b9i8q4 , poptr-u5g0r4 , poptr-u5gf59 , poptr-u7e1l9 , poptr-b9hj61 , poptr-b9hwd0 , poptr-u5fz17 , poptr-a0a2k2brq1 , poptr-a0a2k2b9i6 , poptr-a0a2k1x9y8 , poptr-a9pch4 , poptr-a0a2k1wwt1 , poptr-a0a2k1wv10 , poptr-a0a2k2a850 , poptr-a0a2k2asj6 , poptr-a0a2k1x6k1 , poptr-u5fv96 , poptr-a0a2k2blg2 , poptr-a0a2k1xpi3 , poptr-a0a2k1xpj0 , poptr-a0a2k2b331 , poptr-a0a2k2byl7 , poptr-b9iek5 , poptr-a9pfg4 , poptr-a0a2k1xzs5 , poptr-b9gga9 , poptr-b9guw6 , poptr-b9hff2 , poptr-a9pfc9

Title : Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility - Chain_2006_Proc.Natl.Acad.Sci.U.S.A_103_15280
Author(s) : Chain PS , Denef VJ , Konstantinidis KT , Vergez LM , Agullo L , Reyes VL , Hauser L , Cordova M , Gomez L , Gonzalez M , Land M , Lao V , Larimer F , LiPuma JJ , Mahenthiralingam E , Malfatti SA , Marx CJ , Parnell JJ , Ramette A , Richardson P , Seeger M , Smith D , Spilker T , Sul WJ , Tsoi TV , Ulrich LE , Zhulin IB , Tiedje JM
Ref : Proc Natl Acad Sci U S A , 103 :15280 , 2006
Abstract :
PubMedSearch : Chain_2006_Proc.Natl.Acad.Sci.U.S.A_103_15280
PubMedID: 17030797
Gene_locus related to this paper: burxl-metx , burxl-mhpc , burxl-q13fa9 , burxl-q13ha0 , burxl-q13mn9 , burxl-q13nr6 , burxl-q13ns4 , burxl-q13p13 , burxl-q13p37 , burxl-q13pg5 , burxl-q13ph5 , burxl-q13pw2 , burxl-q13q15 , burxl-q13qw4 , burxl-q13ri3 , burxl-q13ui7 , burxl-q13ul9 , burxl-q13uz6 , burxl-q13vd6 , burxl-q13xg6 , burxl-q146l5 , burxl-q13u43 , parxl-hboh

Title : The DNA sequence and biology of human chromosome 19 - Grimwood_2004_Nature_428_529
Author(s) : Grimwood J , Gordon LA , Olsen A , Terry A , Schmutz J , Lamerdin J , Hellsten U , Goodstein D , Couronne O , Tran-Gyamfi M , Aerts A , Altherr M , Ashworth L , Bajorek E , Black S , Branscomb E , Caenepeel S , Carrano A , Caoile C , Chan YM , Christensen M , Cleland CA , Copeland A , Dalin E , Dehal P , Denys M , Detter JC , Escobar J , Flowers D , Fotopulos D , Garcia C , Georgescu AM , Glavina T , Gomez M , Gonzales E , Groza M , Hammon N , Hawkins T , Haydu L , Ho I , Huang W , Israni S , Jett J , Kadner K , Kimball H , Kobayashi A , Larionov V , Leem SH , Lopez F , Lou Y , Lowry S , Malfatti S , Martinez D , McCready P , Medina C , Morgan J , Nelson K , Nolan M , Ovcharenko I , Pitluck S , Pollard M , Popkie AP , Predki P , Quan G , Ramirez L , Rash S , Retterer J , Rodriguez A , Rogers S , Salamov A , Salazar A , She X , Smith D , Slezak T , Solovyev V , Thayer N , Tice H , Tsai M , Ustaszewska A , Vo N , Wagner M , Wheeler J , Wu K , Xie G , Yang J , Dubchak I , Furey TS , DeJong P , Dickson M , Gordon D , Eichler EE , Pennacchio LA , Richardson P , Stubbs L , Rokhsar DS , Myers RM , Rubin EM , Lucas SM
Ref : Nature , 428 :529 , 2004
Abstract :
PubMedSearch : Grimwood_2004_Nature_428_529
PubMedID: 15057824

Title : The sequence and analysis of duplication-rich human chromosome 16 - Martin_2004_Nature_432_988
Author(s) : Martin J , Han C , Gordon LA , Terry A , Prabhakar S , She X , Xie G , Hellsten U , Chan YM , Altherr M , Couronne O , Aerts A , Bajorek E , Black S , Blumer H , Branscomb E , Brown NC , Bruno WJ , Buckingham JM , Callen DF , Campbell CS , Campbell ML , Campbell EW , Caoile C , Challacombe JF , Chasteen LA , Chertkov O , Chi HC , Christensen M , Clark LM , Cohn JD , Denys M , Detter JC , Dickson M , Dimitrijevic-Bussod M , Escobar J , Fawcett JJ , Flowers D , Fotopulos D , Glavina T , Gomez M , Gonzales E , Goodstein D , Goodwin LA , Grady DL , Grigoriev I , Groza M , Hammon N , Hawkins T , Haydu L , Hildebrand CE , Huang W , Israni S , Jett J , Jewett PB , Kadner K , Kimball H , Kobayashi A , Krawczyk MC , Leyba T , Longmire JL , Lopez F , Lou Y , Lowry S , Ludeman T , Manohar CF , Mark GA , McMurray KL , Meincke LJ , Morgan J , Moyzis RK , Mundt MO , Munk AC , Nandkeshwar RD , Pitluck S , Pollard M , Predki P , Parson-Quintana B , Ramirez L , Rash S , Retterer J , Ricke DO , Robinson DL , Rodriguez A , Salamov A , Saunders EH , Scott D , Shough T , Stallings RL , Stalvey M , Sutherland RD , Tapia R , Tesmer JG , Thayer N , Thompson LS , Tice H , Torney DC , Tran-Gyamfi M , Tsai M , Ulanovsky LE , Ustaszewska A , Vo N , White PS , Williams AL , Wills PL , Wu JR , Wu K , Yang J , DeJong P , Bruce D , Doggett NA , Deaven L , Schmutz J , Grimwood J , Richardson P , Rokhsar DS , Eichler EE , Gilna P , Lucas SM , Myers RM , Rubin EM , Pennacchio LA
Ref : Nature , 432 :988 , 2004
Abstract :
PubMedSearch : Martin_2004_Nature_432_988
PubMedID: 15616553
Gene_locus related to this paper: human-CES1 , human-CES2 , human-CES3 , human-CES4A , human-CES5A

Title : Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative - Klein_2002_Dev.Dyn_225_384
Author(s) : Klein SL , Strausberg RL , Wagner L , Pontius J , Clifton SW , Richardson P
Ref : Developmental Dynamics , 225 :384 , 2002
Abstract :
PubMedSearch : Klein_2002_Dev.Dyn_225_384
PubMedID: 12454917
Gene_locus related to this paper: xenla-a2bd54 , xenla-AAH56661 , xenla-LIPHA , xenla-ndr1a , xenla-ndr4a , xenla-ndr4b , xenla-ndrg2 , xenla-ndrg3 , xenla-P70092 , xenla-ppce , xenla-q2tap9 , xenla-q3kps5 , xenla-q3kq37 , xenla-q3kq76 , xenla-q4klb6 , xenla-q5hz74 , xenla-q5pq28 , xenla-q5u4i8 , xenla-q5u4m0 , xenla-q5u529 , xenla-q5xh01 , xenla-q5xh09 , xenla-q6ax56 , xenla-q6ax59 , xenla-q6dcc5 , xenla-q6dch2 , xenla-q6dci0 , xenla-q6dci7 , xenla-q6dcw6 , xenla-q6dd70 , xenla-q6ddg7 , xenla-q6dfc5 , xenla-q6gll2 , xenla-q6gm54 , xenla-q6gny7 , xenla-q6gp07 , xenla-q6gpx8 , xenla-q6gr22 , xenla-q6inb7 , xenla-q6ir67 , xenla-q6irp4 , xenla-q6ntq4 , xenla-q6p9h9 , xenla-q6pad5 , xenla-q6pcj9 , xenla-Q7SY73 , xenla-Q7SYT6 , xenla-Q7SYX7 , xenla-q7sz70 , xenla-Q7ZWU0 , xenla-Q7ZX97 , xenla-Q7ZXQ6 , xenla-q32n48 , xenla-q32ns5 , xenla-q52l41 , xenla-q63zg7 , xenla-q66j01 , xenla-q66j38 , xenla-q66ku0 , xenla-q66kx1 , xenla-q566i0 , xenla-q640y7 , xenla-q641f6 , xenla-q641i1 , xenla-q642q6 , xenla-q642r3 , xenla-Q860X9 , xenla-SPG21 , xentr-q6nvk7 , xentr-q0p4l6

Title : Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes - Aparicio_2002_Science_297_1301
Author(s) : Aparicio S , Chapman J , Stupka E , Putnam N , Chia JM , Dehal P , Christoffels A , Rash S , Hoon S , Smit A , Gelpke MD , Roach J , Oh T , Ho IY , Wong M , Detter C , Verhoef F , Predki P , Tay A , Lucas S , Richardson P , Smith SF , Clark MS , Edwards YJ , Doggett N , Zharkikh A , Tavtigian SV , Pruss D , Barnstead M , Evans C , Baden H , Powell J , Glusman G , Rowen L , Hood L , Tan YH , Elgar G , Hawkins T , Venkatesh B , Rokhsar D , Brenner S
Ref : Science , 297 :1301 , 2002
Abstract :
PubMedSearch : Aparicio_2002_Science_297_1301
PubMedID: 12142439
Gene_locus related to this paper: fugru-2balip , fugru-2cxest , fugru-3cxest , fugru-3neur , fugru-4cxest , fugru-4neur , fugru-ACHE , fugru-ACHEE , fugru-balip , fugru-BCHE , fugru-BCHEB , fugru-BCHEC , fugru-cxest , takru-1neur , takru-2bneur , takru-3bneur , takru-h2rsj9 , takru-nlgn2a , takru-nlgn4a

Title : The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins - Dehal_2002_Science_298_2157
Author(s) : Dehal P , Satou Y , Campbell RK , Chapman J , Degnan B , De Tomaso A , Davidson B , Di Gregorio A , Gelpke M , Goodstein DM , Harafuji N , Hastings KE , Ho I , Hotta K , Huang W , Kawashima T , Lemaire P , Martinez D , Meinertzhagen IA , Necula S , Nonaka M , Putnam N , Rash S , Saiga H , Satake M , Terry A , Yamada L , Wang HG , Awazu S , Azumi K , Boore J , Branno M , Chin-Bow S , DeSantis R , Doyle S , Francino P , Keys DN , Haga S , Hayashi H , Hino K , Imai KS , Inaba K , Kano S , Kobayashi K , Kobayashi M , Lee BI , Makabe KW , Manohar C , Matassi G , Medina M , Mochizuki Y , Mount S , Morishita T , Miura S , Nakayama A , Nishizaka S , Nomoto H , Ohta F , Oishi K , Rigoutsos I , Sano M , Sasaki A , Sasakura Y , Shoguchi E , Shin-I T , Spagnuolo A , Stainier D , Suzuki MM , Tassy O , Takatori N , Tokuoka M , Yagi K , Yoshizaki F , Wada S , Zhang C , Hyatt PD , Larimer F , Detter C , Doggett N , Glavina T , Hawkins T , Richardson P , Lucas S , Kohara Y , Levine M , Satoh N , Rokhsar DS
Ref : Science , 298 :2157 , 2002
Abstract :
PubMedSearch : Dehal_2002_Science_298_2157
PubMedID: 12481130
Gene_locus related to this paper: cioin-141645 , cioin-147959 , cioin-150181 , cioin-154370 , cioin-ACHE1 , cioin-ACHE2 , cioin-cxest , cioin-f6qcp0 , cioin-f6r8z1 , cioin-f6u176 , cioin-f6vac9 , cioin-f6x584 , cioin-f6xa69 , cioin-f6y403 , cioin-h2xqb4 , cioin-H2XTI0 , cioin-F6T1M3 , cioin-H2XUP7 , cioin-CIN.7233 , cioin-F6V269 , cioin-Cin16330 , cioin-h2xua2 , cioin-f6vaa5 , cioin-f6v9x6 , cioin-f6swc9 , cioin-f7amz2 , cioin-f6s021 , cioin-h2xxq9 , cioin-h2xne6 , cioin-f6ynr2