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Kunka A

References (9)

Title : Advancing Enzyme's Stability and Catalytic Efficiency through Synergy of Force-Field Calculations, Evolutionary Analysis, and Machine Learning - Kunka_2023_ACS.Catal_13_12506
Author(s) : Kunka A , Marques SM , Havlasek M , Vasina M , Velatova N , Cengelova L , Kovar D , Damborsky J , Marek M , Bednar D , Prokop Z
Ref : ACS Catal , 13 :12506 , 2023
Abstract :
PubMedSearch : Kunka_2023_ACS.Catal_13_12506
PubMedID: 37822856
Gene_locus related to this paper: rhoso-halo1

Title : Advanced database mining of efficient haloalkane dehalogenases by sequence and structure bioinformatics and microfluidics - Vasina_2022_Chem.Catal_2_2704
Author(s) : Vasina M , Vanacek P , Hon J , Kovar D , Faldynova H , Kunka A , Buryska T , Badenhorst CPS , Mazurenko S , Bednar D , Stavrakis S , Bornscheuer UT , deMello A , Damborsky J , Prokop Z
Ref : Chem Catalysis , 2 :2704 , 2022
Abstract :
PubMedSearch : Vasina_2022_Chem.Catal_2_2704
PubMedID:

Title : CalFitter 2.0: Leveraging the power of singular value decomposition to analyse protein thermostability - Kunka_2022_Nucleic.Acids.Res__
Author(s) : Kunka A , Lacko D , Stourac J , Damborsky J , Prokop Z , Mazurenko S
Ref : Nucleic Acids Research , : , 2022
Abstract :
PubMedSearch : Kunka_2022_Nucleic.Acids.Res__
PubMedID: 35580052

Title : Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers - Markova_2021_ACS.Catal_11_12864
Author(s) : Markova K , Kunka A , Chmelova K , Havlasek M , Babkova P , Marques SM , Vasina M , Planas-Iglesias J , Chaloupkova R , Bednar D , Prokop Z , Damborsky J , Marek M
Ref : ACS Catal , 11 :12864 , 2021
Abstract :
PubMedSearch : Markova_2021_ACS.Catal_11_12864
PubMedID:
Gene_locus related to this paper: rhoso-halo1

Title : Functional and Mechanistic Characterization of an Enzyme Family Combining Bioinformatics and High-Throughput Microfluidics - Vasina_2021_ResearchSquare__
Author(s) : Vasina M , Vanacek P , Hon J , Kovar D , Faldynova H , Kunka A , Badenhorst C , Buryska T , Mazurenko S , Bednar D , Stavros S , Bornscheuer U , deMello A , Damborsky J , Prokop Z
Ref : ResearchSquare , : , 2021
Abstract :
PubMedSearch : Vasina_2021_ResearchSquare__
PubMedID:
Gene_locus related to this paper: brabe-DbbA , strpu-DspB , sacko-DskA , capte-r7umg5 , shehh-b0tml1 , 9gamm-a6faz5 , 9arch-a0a1q9njs0 , 9noca-DrxA , sphsx-DspxA , 9caul-a0a1e4h0f2 , 9prot-a0a0f2rdt1 , 9noca-k0eup9 , triha-a0a0f9y4y5 , 9rhob-a0a0n7m2p6 , triha-a0a0f9x982 , rhile-DrgA , 9sphn-a0a2d6h3s9 , ensad-DeaA , 9delt-a0a0m4d813 , 9actn-a0a1g6re71 , 9actn-g7h6v4 , 9eury-j3a357 , 9alte-k7apw6 , 9sphn-a3wc35 , 9actn-a0a0c1uk61 , 9pseu-DathA , 9rhob-a0a2t6cbq8 , amys7-DaxA , lenae-DlaA , 9rhob-DpxA , 9actn-a0a1s1sm32 , 9gamm-DtacA , 9eury-a0a1i6hey7 , 9eury-m0il93 , 9actn-l7fa57 , chlad-b8g485 , 9bact-q6sht4 , 9gamm-a0z6e4 , 9rhob-a3sf89 , desps-q6ajw5 , mycmm-b2hjb4 , mycua-a0pum4 , phopr-Q93CH1 , mycav-t2gun3

Title : Functional Annotation of an Enzyme Family by Integrated Strategy Combining Bioinformatics with Microanalytical and Microfluidic Technologies - Vanacek_2021_bioRxiv__
Author(s) : Vanacek P , Vasina M , Hon J , Kovar D , Faldynova H , Kunka A , Buryska T , Badenhorst CPS , Mazurenko S , Bednar D , Bornscheuer UT , Damborsky J , Prokop Z
Ref : Biorxiv , : , 2021
Abstract :
PubMedSearch : Vanacek_2021_bioRxiv__
PubMedID:

Title : Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization - Beerens_2018_ACS.Catal_8_9420
Author(s) : Beerens K , Mazurenko S , Kunka A , Marques SM , Hansen N , Musil M , Chaloupkova R , Waterman J , Brezovsky J , Bednar D , Prokop Z , Damborsky J
Ref : ACS Catal , 8 :9420 , 2018
Abstract :
PubMedSearch : Beerens_2018_ACS.Catal_8_9420
PubMedID:
Gene_locus related to this paper: rhoso-halo1

Title : Metagenome-derived haloalkane dehalogenases with novel catalytic properties - Kotik_2017_Appl.Microbiol.Biotechnol_101_6385
Author(s) : Kotik M , Vanacek P , Kunka A , Prokop Z , Damborsky J
Ref : Applied Microbiology & Biotechnology , 101 :6385 , 2017
Abstract :
PubMedSearch : Kotik_2017_Appl.Microbiol.Biotechnol_101_6385
PubMedID: 28674849
Gene_locus related to this paper: 9bact-v5ln96 , 9bact-v5llz5 , 9bact-v5llk8

Title : Discovery of Novel Haloalkane Dehalogenase Inhibitors - Buryska_2016_Appl.Environ.Microbiol_82_1958
Author(s) : Buryska T , Daniel L , Kunka A , Brezovsky J , Damborsky J , Prokop Z
Ref : Applied Environmental Microbiology , 82 :1958 , 2016
Abstract :
PubMedSearch : Buryska_2016_Appl.Environ.Microbiol_82_1958
PubMedID: 26773086