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Vasina M

References (10)

Title : Functional characterization of luciferase in a brittle star indicates parallel evolution influenced by genomic availability of haloalkane dehalogenase - Lau_2024_bioRxiv__
Author(s) : Lau ES , Majerova M , Hensley NM , Mukherjee A , Vasina M , Pluskal D , Damborsky J , Prokop Z , Delroisse J , Bayaert WS , Parey E , Oliveri P , Marletaz F , Marek M , Oakley TH
Ref : Biorxiv , : , 2024
Abstract :
PubMedSearch : Lau_2024_bioRxiv__
PubMedID: 39463984

Title : Advancing Enzyme's Stability and Catalytic Efficiency through Synergy of Force-Field Calculations, Evolutionary Analysis, and Machine Learning - Kunka_2023_ACS.Catal_13_12506
Author(s) : Kunka A , Marques SM , Havlasek M , Vasina M , Velatova N , Cengelova L , Kovar D , Damborsky J , Marek M , Bednar D , Prokop Z
Ref : ACS Catal , 13 :12506 , 2023
Abstract :
PubMedSearch : Kunka_2023_ACS.Catal_13_12506
PubMedID: 37822856
Gene_locus related to this paper: rhoso-halo1

Title : Tools for computational design and high-throughput screening of therapeutic enzymes - Vasina_2022_Adv.Drug.Deliv.Rev_183_114143
Author(s) : Vasina M , Velecky J , Planas-Iglesias J , Marques SM , Skarupova J , Damborsky J , Bednar D , Mazurenko S , Prokop Z
Ref : Adv Drug Deliv Rev , 183 :114143 , 2022
Abstract :
PubMedSearch : Vasina_2022_Adv.Drug.Deliv.Rev_183_114143
PubMedID: 35167900

Title : Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers - Markova_2021_ACS.Catal_11_12864
Author(s) : Markova K , Kunka A , Chmelova K , Havlasek M , Babkova P , Marques SM , Vasina M , Planas-Iglesias J , Chaloupkova R , Bednar D , Prokop Z , Damborsky J , Marek M
Ref : ACS Catal , 11 :12864 , 2021
Abstract :
PubMedSearch : Markova_2021_ACS.Catal_11_12864
PubMedID:
Gene_locus related to this paper: rhoso-halo1

Title : Functional Annotation of an Enzyme Family by Integrated Strategy Combining Bioinformatics with Microanalytical and Microfluidic Technologies - Vanacek_2021_bioRxiv__
Author(s) : Vanacek P , Vasina M , Hon J , Kovar D , Faldynova H , Kunka A , Buryska T , Badenhorst CPS , Mazurenko S , Bednar D , Bornscheuer UT , Damborsky J , Prokop Z
Ref : Biorxiv , : , 2021
Abstract :
PubMedSearch : Vanacek_2021_bioRxiv__
PubMedID:

Title : Functional and Mechanistic Characterization of an Enzyme Family Combining Bioinformatics and High-Throughput Microfluidics - Vasina_2021_ResearchSquare__
Author(s) : Vasina M , Vanacek P , Hon J , Kovar D , Faldynova H , Kunka A , Badenhorst C , Buryska T , Mazurenko S , Bednar D , Stavros S , Bornscheuer U , deMello A , Damborsky J , Prokop Z
Ref : ResearchSquare , : , 2021
Abstract :
PubMedSearch : Vasina_2021_ResearchSquare__
PubMedID:
Gene_locus related to this paper: brabe-DbbA , strpu-DspB , sacko-DskA , capte-r7umg5 , shehh-b0tml1 , 9gamm-a6faz5 , 9arch-a0a1q9njs0 , 9noca-DrxA , sphsx-DspxA , 9caul-a0a1e4h0f2 , 9prot-a0a0f2rdt1 , 9noca-k0eup9 , triha-a0a0f9y4y5 , 9rhob-a0a0n7m2p6 , triha-a0a0f9x982 , rhile-DrgA , 9sphn-a0a2d6h3s9 , ensad-DeaA , 9delt-a0a0m4d813 , 9actn-a0a1g6re71 , 9actn-g7h6v4 , 9eury-j3a357 , 9alte-k7apw6 , 9sphn-a3wc35 , 9actn-a0a0c1uk61 , 9pseu-DathA , 9rhob-a0a2t6cbq8 , amys7-DaxA , lenae-DlaA , 9rhob-DpxA , 9actn-a0a1s1sm32 , 9gamm-DtacA , 9eury-a0a1i6hey7 , 9eury-m0il93 , 9actn-l7fa57 , chlad-b8g485 , 9bact-q6sht4 , 9gamm-a0z6e4 , 9rhob-a3sf89 , desps-q6ajw5 , mycmm-b2hjb4 , mycua-a0pum4 , phopr-Q93CH1 , mycav-t2gun3

Title : Engineering the protein dynamics of an ancestral luciferase - Schenkmayerova_2021_Nat.Commun_12_3616
Author(s) : Schenkmayerova A , Pinto GP , Toul M , Marek M , Hernychova L , Planas-Iglesias J , Daniel Liskova V , Pluskal D , Vasina M , Emond S , Dorr M , Chaloupkova R , Bednar D , Prokop Z , Hollfelder F , Bornscheuer UT , Damborsky J
Ref : Nat Commun , 12 :3616 , 2021
Abstract :
PubMedSearch : Schenkmayerova_2021_Nat.Commun_12_3616
PubMedID: 34127663
Gene_locus related to this paper: renre-luc

Title : Exploration of enzyme diversity: High-throughput techniques for protein production and microscale biochemical characterization - Vasina_2020_Methods.Enzymol_643_51
Author(s) : Vasina M , Vanacek P , Damborsky J , Prokop Z
Ref : Methods Enzymol , 643 :51 , 2020
Abstract :
PubMedSearch : Vasina_2020_Methods.Enzymol_643_51
PubMedID: 32896287

Title : Engineering Protein Dynamics of Ancestral Luciferase - Schenkmayerova_2020_Chemrxiv__
Author(s) : Schenkmayerova A , Pinto GP , Toul M , Marek M , Hernychova L , Planas-Iglesias J , Liskova V , Pluskal D , Vasina M , Emond S , Dorr M , Chaloupkova R , Bednar D , Prokop Z , Hollfelder F , Bornscheuer UT , Damborsky J
Ref : Chemrxiv , : , 2020
Abstract :
PubMedSearch : Schenkmayerova_2020_Chemrxiv__
PubMedID:
Gene_locus related to this paper: renre-luc

Title : Controlled Oil\/Water Partitioning of Hydrophobic Substrates Extending the Bioanalytical Applications of Droplet-Based Microfluidics - Buryska_2019_Anal.Chem_91_10008
Author(s) : Buryska T , Vasina M , Gielen F , Vanacek P , van Vliet L , Jezek J , Pilat Z , Zemanek P , Damborsky J , Hollfelder F , Prokop Z
Ref : Analytical Chemistry , 91 :10008 , 2019
Abstract :
PubMedSearch : Buryska_2019_Anal.Chem_91_10008
PubMedID: 31240908