| Title : Automated Engineering Protein Dynamics via Loop Grafting: Improving Renilla Luciferase Catalysis - Planas-Iglesias_2025_ACS.Catal_15_3391 |
| Author(s) : Planas-Iglesias J , Majerova M , Pluskal D , Vasina M , Damborsky J , Prokop Z , Marek M , Bednar D |
| Ref : ACS Catal , 15 :3391 , 2025 |
| Abstract : |
| PubMedSearch : Planas-Iglesias_2025_ACS.Catal_15_3391 |
| PubMedID: |
| Gene_locus related to this paper: 9zzzz-AncFT7 , 9zzzz-AncHLDRLuc2 |
| Title : Functional characterization of luciferase in a brittle star indicates parallel evolution influenced by genomic availability of haloalkane dehalogenase - Lau_2024_bioRxiv__ |
| Author(s) : Lau ES , Majerova M , Hensley NM , Mukherjee A , Vasina M , Pluskal D , Damborsky J , Prokop Z , Delroisse J , Bayaert WS , Parey E , Oliveri P , Marletaz F , Marek M , Oakley TH |
| Ref : Biorxiv , : , 2024 |
| Abstract : |
| PubMedSearch : Lau_2024_bioRxiv__ |
| PubMedID: 39463984 |
| Title : Advancing Enzyme's Stability and Catalytic Efficiency through Synergy of Force-Field Calculations, Evolutionary Analysis, and Machine Learning - Kunka_2023_ACS.Catal_13_12506 |
| Author(s) : Kunka A , Marques SM , Havlasek M , Vasina M , Velatova N , Cengelova L , Kovar D , Damborsky J , Marek M , Bednar D , Prokop Z |
| Ref : ACS Catal , 13 :12506 , 2023 |
| Abstract : |
| PubMedSearch : Kunka_2023_ACS.Catal_13_12506 |
| PubMedID: 37822856 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Advanced database mining of efficient haloalkane dehalogenases by sequence and structure bioinformatics and microfluidics - Vasina_2022_Chem.Catal_2_2704 |
| Author(s) : Vasina M , Vanacek P , Hon J , Kovar D , Faldynova H , Kunka A , Buryska T , Badenhorst CPS , Mazurenko S , Bednar D , Stavrakis S , Bornscheuer UT , deMello A , Damborsky J , Prokop Z |
| Ref : Chem Catalysis , 2 :2704 , 2022 |
| Abstract : |
| PubMedSearch : Vasina_2022_Chem.Catal_2_2704 |
| PubMedID: |
| Title : Tools for computational design and high-throughput screening of therapeutic enzymes - Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| Author(s) : Vasina M , Velecky J , Planas-Iglesias J , Marques SM , Skarupova J , Damborsky J , Bednar D , Mazurenko S , Prokop Z |
| Ref : Adv Drug Deliv Rev , 183 :114143 , 2022 |
| Abstract : |
| PubMedSearch : Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| PubMedID: 35167900 |
| Title : Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers - Markova_2021_ACS.Catal_11_12864 |
| Author(s) : Markova K , Kunka A , Chmelova K , Havlasek M , Babkova P , Marques SM , Vasina M , Planas-Iglesias J , Chaloupkova R , Bednar D , Prokop Z , Damborsky J , Marek M |
| Ref : ACS Catal , 11 :12864 , 2021 |
| Abstract : |
| PubMedSearch : Markova_2021_ACS.Catal_11_12864 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Engineering the protein dynamics of an ancestral luciferase - Schenkmayerova_2021_Nat.Commun_12_3616 |
| Author(s) : Schenkmayerova A , Pinto GP , Toul M , Marek M , Hernychova L , Planas-Iglesias J , Daniel Liskova V , Pluskal D , Vasina M , Emond S , Dorr M , Chaloupkova R , Bednar D , Prokop Z , Hollfelder F , Bornscheuer UT , Damborsky J |
| Ref : Nat Commun , 12 :3616 , 2021 |
| Abstract : |
| PubMedSearch : Schenkmayerova_2021_Nat.Commun_12_3616 |
| PubMedID: 34127663 |
| Gene_locus related to this paper: renre-luc |
| Title : Functional Annotation of an Enzyme Family by Integrated Strategy Combining Bioinformatics with Microanalytical and Microfluidic Technologies - Vanacek_2021_bioRxiv__ |
| Author(s) : Vanacek P , Vasina M , Hon J , Kovar D , Faldynova H , Kunka A , Buryska T , Badenhorst CPS , Mazurenko S , Bednar D , Bornscheuer UT , Damborsky J , Prokop Z |
| Ref : Biorxiv , : , 2021 |
| Abstract : |
| PubMedSearch : Vanacek_2021_bioRxiv__ |
| PubMedID: |
| Title : Exploration of enzyme diversity: High-throughput techniques for protein production and microscale biochemical characterization - Vasina_2020_Methods.Enzymol_643_51 |
| Author(s) : Vasina M , Vanacek P , Damborsky J , Prokop Z |
| Ref : Methods Enzymol , 643 :51 , 2020 |
| Abstract : |
| PubMedSearch : Vasina_2020_Methods.Enzymol_643_51 |
| PubMedID: 32896287 |
| Title : Engineering Protein Dynamics of Ancestral Luciferase - Schenkmayerova_2020_Chemrxiv__ |
| Author(s) : Schenkmayerova A , Pinto GP , Toul M , Marek M , Hernychova L , Planas-Iglesias J , Liskova V , Pluskal D , Vasina M , Emond S , Dorr M , Chaloupkova R , Bednar D , Prokop Z , Hollfelder F , Bornscheuer UT , Damborsky J |
| Ref : Chemrxiv , : , 2020 |
| Abstract : |
| PubMedSearch : Schenkmayerova_2020_Chemrxiv__ |
| PubMedID: |
| Gene_locus related to this paper: renre-luc |
| Title : Controlled Oil\/Water Partitioning of Hydrophobic Substrates Extending the Bioanalytical Applications of Droplet-Based Microfluidics - Buryska_2019_Anal.Chem_91_10008 |
| Author(s) : Buryska T , Vasina M , Gielen F , Vanacek P , van Vliet L , Jezek J , Pilat Z , Zemanek P , Damborsky J , Hollfelder F , Prokop Z |
| Ref : Analytical Chemistry , 91 :10008 , 2019 |
| Abstract : |
| PubMedSearch : Buryska_2019_Anal.Chem_91_10008 |
| PubMedID: 31240908 |