| Title : Experimentally validated deep learning control of protein aggregation - Cima_2026_Commun.Chem__ |
| Author(s) : Cima V , Kunka A , Planas-Iglesias J , Grakova E , Havlasek M , Subramanian M , Beloch M , Marek M , Slaninova K , Damborsky J , Prokop Z , Bednar D , Martinovic J |
| Ref : Commun Chem , : , 2026 |
| Abstract : |
| PubMedSearch : Cima_2026_Commun.Chem__ |
| PubMedID: 42045651 |
| Title : Mobilizing the Biocatalysis Community for Reproducible and Reusable Data Collection - Marques_2026_ACS.Catalysis_16_8858 |
| Author(s) : Marques SM , Planas-Iglesias J , Velecky J , Musil M , Asano Y , Borowski T , Brissos V , Cespugli M , Chorozian K , Dadashipour M , Erdem E , Ferrandi EE , Grigorakis K , Kluza A , Lawniczek J , Makryniotis K , Monti D , Nestl B , Ngo AC , Nikolaivits E , Patti S , Pentari C , Rodrigues CF , Schopper T , Seweryn-Ozog K , Szaleniec M , Taborda A , Tataruch M , Tischler D , Topakas E , Wang J , Wojcik P , Wojtkiewicz AM , Woodley JM , Zastawny O , Martins LO , Fraaije M , Pleiss J , Schnell S , Damborsky J , Mazurenko S , Bednar D |
| Ref : ACS Catalysis , 16 :8858 , 2026 |
| Abstract : |
| PubMedSearch : Marques_2026_ACS.Catalysis_16_8858 |
| PubMedID: |
| Title : Automated Engineering Protein Dynamics via Loop Grafting: Improving Renilla Luciferase Catalysis - Planas-Iglesias_2025_ACS.Catal_15_3391 |
| Author(s) : Planas-Iglesias J , Majerova M , Pluskal D , Vasina M , Damborsky J , Prokop Z , Marek M , Bednar D |
| Ref : ACS Catal , 15 :3391 , 2025 |
| Abstract : |
| PubMedSearch : Planas-Iglesias_2025_ACS.Catal_15_3391 |
| PubMedID: |
| Gene_locus related to this paper: 9zzzz-AncFT7 , 9zzzz-AncHLDRLuc2 |
| Title : Study of Protein Conformational Dynamics Using Hydrogen\/Deuterium Exchange Mass Spectrometry - Uhrik_2023_Methods.Mol.Biol_2652_293 |
| Author(s) : Uhrik L , Henek T , Planas-Iglesias J , Kucera J , Damborsky J , Marek M , Hernychova L |
| Ref : Methods Mol Biol , 2652 :293 , 2023 |
| Abstract : |
| PubMedSearch : Uhrik_2023_Methods.Mol.Biol_2652_293 |
| PubMedID: 37093484 |
| Title : LoopGrafter: a web tool for transplanting dynamical loops for protein engineering - Planas-Iglesias_2022_Nucleic.Acids.Res__ |
| Author(s) : Planas-Iglesias J , Opaleny F , Ulbrich P , Stourac J , Sanusi Z , Pinto GP , Schenkmayerova A , Byska J , Damborsky J , Kozlikova B , Bednar D |
| Ref : Nucleic Acids Research , : , 2022 |
| Abstract : |
| PubMedSearch : Planas-Iglesias_2022_Nucleic.Acids.Res__ |
| PubMedID: 35438789 |
| Title : Tools for computational design and high-throughput screening of therapeutic enzymes - Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| Author(s) : Vasina M , Velecky J , Planas-Iglesias J , Marques SM , Skarupova J , Damborsky J , Bednar D , Mazurenko S , Prokop Z |
| Ref : Adv Drug Deliv Rev , 183 :114143 , 2022 |
| Abstract : |
| PubMedSearch : Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| PubMedID: 35167900 |
| Title : Engineering the protein dynamics of an ancestral luciferase - Schenkmayerova_2021_Nat.Commun_12_3616 |
| Author(s) : Schenkmayerova A , Pinto GP , Toul M , Marek M , Hernychova L , Planas-Iglesias J , Daniel Liskova V , Pluskal D , Vasina M , Emond S , Dorr M , Chaloupkova R , Bednar D , Prokop Z , Hollfelder F , Bornscheuer UT , Damborsky J |
| Ref : Nat Commun , 12 :3616 , 2021 |
| Abstract : |
| PubMedSearch : Schenkmayerova_2021_Nat.Commun_12_3616 |
| PubMedID: 34127663 |
| Gene_locus related to this paper: renre-luc |
| Title : Web-based tools for computational enzyme design - Marques_2021_Curr.Opin.Struct.Biol_69_19 |
| Author(s) : Marques SM , Planas-Iglesias J , Damborsky J |
| Ref : Current Opinion in Structural Biology , 69 :19 , 2021 |
| Abstract : |
| PubMedSearch : Marques_2021_Curr.Opin.Struct.Biol_69_19 |
| PubMedID: 33667757 |
| Title : Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers - Markova_2021_ACS.Catal_11_12864 |
| Author(s) : Markova K , Kunka A , Chmelova K , Havlasek M , Babkova P , Marques SM , Vasina M , Planas-Iglesias J , Chaloupkova R , Bednar D , Prokop Z , Damborsky J , Marek M |
| Ref : ACS Catal , 11 :12864 , 2021 |
| Abstract : |
| PubMedSearch : Markova_2021_ACS.Catal_11_12864 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Engineering Protein Dynamics of Ancestral Luciferase - Schenkmayerova_2020_Chemrxiv__ |
| Author(s) : Schenkmayerova A , Pinto GP , Toul M , Marek M , Hernychova L , Planas-Iglesias J , Liskova V , Pluskal D , Vasina M , Emond S , Dorr M , Chaloupkova R , Bednar D , Prokop Z , Hollfelder F , Bornscheuer UT , Damborsky J |
| Ref : Chemrxiv , : , 2020 |
| Abstract : |
| PubMedSearch : Schenkmayerova_2020_Chemrxiv__ |
| PubMedID: |
| Gene_locus related to this paper: renre-luc |
| Title : Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17 - Chrast_2019_Microorganisms_7_ |
| Author(s) : Chrast L , Tratsiak K , Planas-Iglesias J , Daniel L , Prudnikova T , Brezovsky J , Bednar D , Kuta Smatanova I , Chaloupkova R , Damborsky J |
| Ref : Microorganisms , 7 : , 2019 |
| Abstract : |
| PubMedSearch : Chrast_2019_Microorganisms_7_ |
| PubMedID: 31661858 |
| Gene_locus related to this paper: 9alte-a3jb27 |