| Title : FireProtASR 2.0: evolution-guided Design of Protein Ancestors and Successors with phylogenetics and machine learning - Kohout_2026_Brief.Bioinform_27_ |
| Author(s) : Kohout P , Lacko D , Musil M , Borko S , Stepanek M , Velecky J , Kabourek P , Khan RT , Rosinska M , Damborsky J , Mazurenko S , Bednar D |
| Ref : Brief Bioinform , 27 : , 2026 |
| Abstract : |
| PubMedSearch : Kohout_2026_Brief.Bioinform_27_ |
| PubMedID: 42649115 |
| Title : Mobilizing the Biocatalysis Community for Reproducible and Reusable Data Collection - Marques_2026_ACS.Catal_16_8858 |
| Author(s) : Marques SM , Planas-Iglesias J , Velecky J , Musil M , Asano Y , Borowski T , Brissos V , Cespugli M , Chorozian K , Dadashipour M , Erdem E , Ferrandi EE , Grigorakis K , Kluza A , Lawniczek J , Makryniotis K , Monti D , Nestl B , Ngo AC , Nikolaivits E , Patti S , Pentari C , Rodrigues CF , Schopper T , Seweryn-Ozog K , Szaleniec M , Taborda A , Tataruch M , Tischler D , Topakas E , Wang J , Wojcik P , Wojtkiewicz AM , Woodley JM , Zastawny O , Martins LO , Fraaije M , Pleiss J , Schnell S , Damborsky J , Mazurenko S , Bednar D |
| Ref : ACS Catalysis , 16 :8858 , 2026 |
| Abstract : |
| PubMedSearch : Marques_2026_ACS.Catal_16_8858 |
| PubMedID: |
| Title : Engineering Dehalogenase Enzymes Using Variational Autoencoder-Generated Latent Spaces and Microfluidics - Kohout_2025_JACS.Au_5_838 |
| Author(s) : Kohout P , Vasina M , Majerova M , Novakova V , Damborsky J , Bednar D , Marek M , Prokop Z , Mazurenko S |
| Ref : JACS Au , 5 :838 , 2025 |
| Abstract : |
| PubMedSearch : Kohout_2025_JACS.Au_5_838 |
| PubMedID: 40017771 |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Exploring new galaxies: Perspectives on the discovery of novel PET-degrading enzymes - Mican_2024_Appl.Catal.B.Environmental_342_123404 |
| Author(s) : Mican J , Jaradat DMM , Liu W , Weber G , Mazurenko S , Bornscheuer UT , Damborsky J , Wei R , Bednar D |
| Ref : Applied Catalysis B: Environmental , 342 :123404 , 2024 |
| Abstract : |
| PubMedSearch : Mican_2024_Appl.Catal.B.Environmental_342_123404 |
| PubMedID: |
| Title : Tools for computational design and high-throughput screening of therapeutic enzymes - Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| Author(s) : Vasina M , Velecky J , Planas-Iglesias J , Marques SM , Skarupova J , Damborsky J , Bednar D , Mazurenko S , Prokop Z |
| Ref : Adv Drug Deliv Rev , 183 :114143 , 2022 |
| Abstract : |
| PubMedSearch : Vasina_2022_Adv.Drug.Deliv.Rev_183_114143 |
| PubMedID: 35167900 |
| Title : Advanced database mining of efficient haloalkane dehalogenases by sequence and structure bioinformatics and microfluidics - Vasina_2022_Chem.Catal_2_2704 |
| Author(s) : Vasina M , Vanacek P , Hon J , Kovar D , Faldynova H , Kunka A , Buryska T , Badenhorst CPS , Mazurenko S , Bednar D , Stavrakis S , Bornscheuer UT , deMello A , Damborsky J , Prokop Z |
| Ref : Chem Catalysis , 2 :2704 , 2022 |
| Abstract : |
| PubMedSearch : Vasina_2022_Chem.Catal_2_2704 |
| PubMedID: |
| Title : CalFitter 2.0: Leveraging the power of singular value decomposition to analyse protein thermostability - Kunka_2022_Nucleic.Acids.Res__ |
| Author(s) : Kunka A , Lacko D , Stourac J , Damborsky J , Prokop Z , Mazurenko S |
| Ref : Nucleic Acids Research , : , 2022 |
| Abstract : |
| PubMedSearch : Kunka_2022_Nucleic.Acids.Res__ |
| PubMedID: 35580052 |
| Title : Substrate inhibition by the blockage of product release and its control by tunnel engineering - Kokkonen_2021_RSC.Chem.Biol_2_645 |
| Author(s) : Kokkonen P , Beier A , Mazurenko S , Damborsky J , Bednar D , Prokop Z |
| Ref : RSC Chemical Biology , 2 :645 , 2021 |
| Abstract : |
| PubMedSearch : Kokkonen_2021_RSC.Chem.Biol_2_645 |
| PubMedID: 34458806 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Functional Annotation of an Enzyme Family by Integrated Strategy Combining Bioinformatics with Microanalytical and Microfluidic Technologies - Vanacek_2021_bioRxiv__ |
| Author(s) : Vanacek P , Vasina M , Hon J , Kovar D , Faldynova H , Kunka A , Buryska T , Badenhorst CPS , Mazurenko S , Bednar D , Bornscheuer UT , Damborsky J , Prokop Z |
| Ref : bioRxiv , : , 2021 |
| Abstract : |
| PubMedSearch : Vanacek_2021_bioRxiv__ |
| PubMedID: |
| Title : Development of fluorescent assay for monitoring of dehalogenase activity - Nevolova_2018_Biotechnol.J__e1800144 |
| Author(s) : Nevolova S , Manaskova E , Mazurenko S , Damborsky J , Prokop Z |
| Ref : Biotechnol J , :e1800144 , 2018 |
| Abstract : |
| PubMedSearch : Nevolova_2018_Biotechnol.J__e1800144 |
| PubMedID: 30052322 |
| Title : Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization - Beerens_2018_ACS.Catal_8_9420 |
| Author(s) : Beerens K , Mazurenko S , Kunka A , Marques SM , Hansen N , Musil M , Chaloupkova R , Waterman J , Brezovsky J , Bednar D , Prokop Z , Damborsky J |
| Ref : ACS Catal , 8 :9420 , 2018 |
| Abstract : |
| PubMedSearch : Beerens_2018_ACS.Catal_8_9420 |
| PubMedID: |
| Gene_locus related to this paper: rhoso-halo1 |
| Title : Sensitive operation of enzyme-based biodevices by advanced signal processing - Mazurenko_2018_PLoS.One_13_e0198913 |
| Author(s) : Mazurenko S , Bidmanova S , Kotlanova M , Damborsky J , Prokop Z |
| Ref : PLoS ONE , 13 :e0198913 , 2018 |
| Abstract : |
| PubMedSearch : Mazurenko_2018_PLoS.One_13_e0198913 |
| PubMedID: 29912920 |