| Title : Complete Genome Sequence of a Dimethyl Sulfide-Utilizing Bacterium, Acinetobacter guillouiae Strain 20B (NBRC 110550) - Yee_2014_Genome.Announc_2_e01048 |
| Author(s) : Yee L , Hosoyama A , Ohji S , Tsuchikane K , Shimodaira J , Yamazoe A , Fujita N , Suzuki-Minakuchi C , Nojiri H |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : |
| PubMedSearch : Yee_2014_Genome.Announc_2_e01048 |
| PubMedID: 25323718 |
| Gene_locus related to this paper: acigi-n8ybk0 , acigi-n8tiz0 , acigi-a0a077l572 , acigi-a0a077l147 , acigi-n8wvi6 |
| Title : Complete Genome Sequence of the Carbazole Degrader Pseudomonas resinovorans Strain CA10 (NBRC 106553) - Shintani_2013_Genome.Announc_1_e00488 |
| Author(s) : Shintani M , Hosoyama A , Ohji S , Tsuchikane K , Takarada H , Yamazoe A , Fujita N , Nojiri H |
| Ref : Genome Announc , 1 :e00488 , 2013 |
| Abstract : |
| PubMedSearch : Shintani_2013_Genome.Announc_1_e00488 |
| PubMedID: 23887915 |
| Gene_locus related to this paper: psere-s6ale3 , psere-s6ans1 , psere-s6aji0 , psere-s6aev9 , psere-s6amt1 , psere-s6agn4 |
| Title : Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function - Yun_2010_J.Bacteriol_192_4720 |
| Author(s) : Yun CS , Suzuki C , Naito K , Takeda T , Takahashi Y , Sai F , Terabayashi T , Miyakoshi M , Shintani M , Nishida H , Yamane H , Nojiri H |
| Ref : Journal of Bacteriology , 192 :4720 , 2010 |
| Abstract : |
| PubMedSearch : Yun_2010_J.Bacteriol_192_4720 |
| PubMedID: 20639326 |
| Gene_locus related to this paper: psest-bpdF |
| Title : Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1 - Shintani_2010_Environ.Microbiol_12_1413 |
| Author(s) : Shintani M , Takahashi Y , Tokumaru H , Kadota K , Hara H , Miyakoshi M , Naito K , Yamane H , Nishida H , Nojiri H |
| Ref : Environ Microbiol , 12 :1413 , 2010 |
| Abstract : |
| PubMedSearch : Shintani_2010_Environ.Microbiol_12_1413 |
| PubMedID: 19930443 |
| Gene_locus related to this paper: psest-bpdF |
| Title : The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids - Takahashi_2009_Biosci.Biotechnol.Biochem_73_744 |
| Author(s) : Takahashi Y , Shintani M , Yamane H , Nojiri H |
| Ref : Biosci Biotechnol Biochem , 73 :744 , 2009 |
| Abstract : |
| PubMedSearch : Takahashi_2009_Biosci.Biotechnol.Biochem_73_744 |
| PubMedID: 19270415 |
| Gene_locus related to this paper: psest-bpdF |
| Title : Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway - Takahashi_2009_Appl.Environ.Microbiol_75_3920 |
| Author(s) : Takahashi Y , Shintani M , Li L , Yamane H , Nojiri H |
| Ref : Applied Environmental Microbiology , 75 :3920 , 2009 |
| Abstract : |
| PubMedSearch : Takahashi_2009_Appl.Environ.Microbiol_75_3920 |
| PubMedID: 19376894 |
| Gene_locus related to this paper: psest-bpdF |
| Title : High-resolution mapping of plasmid transcriptomes in different host bacteria - Miyakoshi_2009_BMC.Genomics_10_12 |
| Author(s) : Miyakoshi M , Nishida H , Shintani M , Yamane H , Nojiri H |
| Ref : BMC Genomics , 10 :12 , 2009 |
| Abstract : |
| PubMedSearch : Miyakoshi_2009_BMC.Genomics_10_12 |
| PubMedID: 19134166 |
| Gene_locus related to this paper: psest-bpdF |
| Title : The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole - Shintani_2007_J.Bacteriol_189_2007 |
| Author(s) : Shintani M , Urata M , Inoue K , Eto K , Habe H , Omori T , Yamane H , Nojiri H |
| Ref : Journal of Bacteriology , 189 :2007 , 2007 |
| Abstract : |
| PubMedSearch : Shintani_2007_J.Bacteriol_189_2007 |
| PubMedID: 17172338 |
| Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 |
| Title : Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01 - Jun_2006_Biochim.Biophys.Acta_1764_1159 |
| Author(s) : Jun SY , Fushinobu S , Nojiri H , Omori T , Shoun H , Wakagi T |
| Ref : Biochimica & Biophysica Acta , 1764 :1159 , 2006 |
| Abstract : |
| PubMedSearch : Jun_2006_Biochim.Biophys.Acta_1764_1159 |
| PubMedID: 16844437 |
| Gene_locus related to this paper: psefl-cumD |
| Title : Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate - Urata_2006_Appl.Environ.Microbiol_72_3198 |
| Author(s) : Urata M , Uchimura H , Noguchi H , Sakaguchi T , Takemura T , Eto K , Habe H , Omori T , Yamane H , Nojiri H |
| Ref : Applied Environmental Microbiology , 72 :3198 , 2006 |
| Abstract : |
| PubMedSearch : Urata_2006_Appl.Environ.Microbiol_72_3198 |
| PubMedID: 16672458 |
| Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3 |
| Title : Characterization of novel carbazole catabolism genes from gram-positive carbazole degrader Nocardioides aromaticivorans IC177 - Inoue_2006_Appl.Environ.Microbiol_72_3321 |
| Author(s) : Inoue K , Habe H , Yamane H , Nojiri H |
| Ref : Applied Environmental Microbiology , 72 :3321 , 2006 |
| Abstract : |
| PubMedSearch : Inoue_2006_Appl.Environ.Microbiol_72_3321 |
| PubMedID: 16672473 |
| Gene_locus related to this paper: 9acto-q2hwh9 |
| Title : Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole\/dioxin-degradative car gene cluster in different bacteria - Shintani_2005_Appl.Microbiol.Biotechnol_67_370 |
| Author(s) : Shintani M , Yoshida T , Habe H , Omori T , Nojiri H |
| Ref : Applied Microbiology & Biotechnology , 67 :370 , 2005 |
| Abstract : |
| PubMedSearch : Shintani_2005_Appl.Microbiol.Biotechnol_67_370 |
| PubMedID: 15856217 |
| Gene_locus related to this paper: psest-bpdF |
| Title : Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains - Shintani_2005_Biotechnol.Lett_27_1847 |
| Author(s) : Shintani M , Habe H , Tsuda M , Omori T , Yamane H , Nojiri H |
| Ref : Biotechnol Lett , 27 :1847 , 2005 |
| Abstract : |
| PubMedSearch : Shintani_2005_Biotechnol.Lett_27_1847 |
| PubMedID: 16328978 |
| Gene_locus related to this paper: psest-bpdF |
| Title : Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63 - Takagi_2005_Appl.Microbiol.Biotechnol_68_336 |
| Author(s) : Takagi T , Habe H , Yoshida T , Yamane H , Omori T , Nojiri H |
| Ref : Applied Microbiology & Biotechnology , 68 :336 , 2005 |
| Abstract : |
| PubMedSearch : Takagi_2005_Appl.Microbiol.Biotechnol_68_336 |
| PubMedID: 15717172 |
| Gene_locus related to this paper: 9mico-q3mnp3 |
| Title : The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria - Habe_2005_Microbiology_151_3713 |
| Author(s) : Habe H , Chung JS , Ishida A , Kasuga K , Ide K , Takemura T , Nojiri H , Yamane H , Omori T |
| Ref : Microbiology , 151 :3713 , 2005 |
| Abstract : |
| PubMedSearch : Habe_2005_Microbiology_151_3713 |
| PubMedID: 16272392 |
| Gene_locus related to this paper: 9mico-q3mnp3 |
| Title : A series of crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with various cleavage products - Fushinobu_2005_Biosci.Biotechnol.Biochem_69_491 |
| Author(s) : Fushinobu S , Jun SY , Hidaka M , Nojiri H , Yamane H , Shoun H , Omori T , Wakagi T |
| Ref : Biosci Biotechnol Biochem , 69 :491 , 2005 |
| Abstract : |
| PubMedSearch : Fushinobu_2005_Biosci.Biotechnol.Biochem_69_491 |
| PubMedID: 15784976 |
| Gene_locus related to this paper: psefl-cumD |
| Title : Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium - Inoue_2005_FEMS.Microbiol.Lett_245_145 |
| Author(s) : Inoue K , Habe H , Yamane H , Omori T , Nojiri H |
| Ref : FEMS Microbiology Letters , 245 :145 , 2005 |
| Abstract : |
| PubMedSearch : Inoue_2005_FEMS.Microbiol.Lett_245_145 |
| PubMedID: 15796992 |
| Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3 |
| Title : Secretion of bacterial xenobiotic-degrading enzymes from transgenic plants by an apoplastic expressional system: an applicability for phytoremediation - Uchida_2005_Environ.Sci.Technol_39_7671 |
| Author(s) : Uchida E , Ouchi T , Suzuki Y , Yoshida T , Habe H , Yamaguchi I , Omori T , Nojiri H |
| Ref : Environ Sci Technol , 39 :7671 , 2005 |
| Abstract : |
| PubMedSearch : Uchida_2005_Environ.Sci.Technol_39_7671 |
| PubMedID: 16245843 |
| Title : Genetic characterization of the dibenzofuran-degrading Actinobacteria carrying the dbfA1A2 gene homologues isolated from activated sludge - Noumura_2004_FEMS.Microbiol.Lett_239_147 |
| Author(s) : Noumura T , Habe H , Widada J , Chung JS , Yoshida T , Nojiri H , Omori T |
| Ref : FEMS Microbiology Letters , 239 :147 , 2004 |
| Abstract : |
| PubMedSearch : Noumura_2004_FEMS.Microbiol.Lett_239_147 |
| PubMedID: 15451113 |
| Gene_locus related to this paper: 9mico-q3mnp3 , rhosp-ORF4 |
| Title : Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63 - Habe_2004_J.Bacteriol_186_5938 |
| Author(s) : Habe H , Chung JS , Kato H , Ayabe Y , Kasuga K , Yoshida T , Nojiri H , Yamane H , Omori T |
| Ref : Journal of Bacteriology , 186 :5938 , 2004 |
| Abstract : |
| PubMedSearch : Habe_2004_J.Bacteriol_186_5938 |
| PubMedID: 15317800 |
| Gene_locus related to this paper: 9mico-q3mnp3 |
| Title : Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria - Inoue_2004_Biosci.Biotechnol.Biochem_68_1467 |
| Author(s) : Inoue K , Widada J , Nakai S , Endoh T , Urata M , Ashikawa Y , Shintani M , Saiki Y , Yoshida T , Habe H , Omori T , Nojiri H |
| Ref : Biosci Biotechnol Biochem , 68 :1467 , 2004 |
| Abstract : |
| PubMedSearch : Inoue_2004_Biosci.Biotechnol.Biochem_68_1467 |
| PubMedID: 15277751 |
| Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3 |
| Title : Preparation and biological activity of molecular probes to identify and analyze jasmonic acid-binding proteins - Jikumaru_2004_Biosci.Biotechnol.Biochem_68_1461 |
| Author(s) : Jikumaru Y , Asami T , Seto H , Yoshida S , Yokoyama T , Obara N , Hasegawa M , Kodama O , Nishiyama M , Okada K , Nojiri H , Yamane H |
| Ref : Biosci Biotechnol Biochem , 68 :1461 , 2004 |
| Abstract : |
| PubMedSearch : Jikumaru_2004_Biosci.Biotechnol.Biochem_68_1461 |
| PubMedID: 15277750 |
| Title : Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10 - Nojiri_2003_Biosci.Biotechnol.Biochem_67_36 |
| Author(s) : Nojiri H , Taira H , Iwata K , Morii K , Nam JW , Yoshida T , Habe H , Nakamura S , Shimizu K , Yamane H , Omori T |
| Ref : Biosci Biotechnol Biochem , 67 :36 , 2003 |
| Abstract : |
| PubMedSearch : Nojiri_2003_Biosci.Biotechnol.Biochem_67_36 |
| PubMedID: 12619671 |
| Gene_locus related to this paper: psesp-Q9AQN6 |
| Title : Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63 - Habe_2003_Appl.Microbiol.Biotechnol_61_44 |
| Author(s) : Habe H , Miyakoshi M , Chung J , Kasuga K , Yoshida T , Nojiri H , Omori T |
| Ref : Applied Microbiology & Biotechnology , 61 :44 , 2003 |
| Abstract : |
| PubMedSearch : Habe_2003_Appl.Microbiol.Biotechnol_61_44 |
| PubMedID: 12658514 |
| Gene_locus related to this paper: 9mico-q3mnp3 |
| Title : Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2 - Pinyakong_2003_Biochem.Biophys.Res.Commun_301_350 |
| Author(s) : Pinyakong O , Habe H , Yoshida T , Nojiri H , Omori T |
| Ref : Biochemical & Biophysical Research Communications , 301 :350 , 2003 |
| Abstract : |
| PubMedSearch : Pinyakong_2003_Biochem.Biophys.Res.Commun_301_350 |
| PubMedID: 12565867 |
| Gene_locus related to this paper: psepa-q6qhu7 |
| Title : Complete nucleotide sequence of carbazole\/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676 - Maeda_2003_J.Mol.Biol_326_21 |
| Author(s) : Maeda K , Nojiri H , Shintani M , Yoshida T , Habe H , Omori T |
| Ref : Journal of Molecular Biology , 326 :21 , 2003 |
| Abstract : |
| PubMedSearch : Maeda_2003_J.Mol.Biol_326_21 |
| PubMedID: 12547188 |
| Gene_locus related to this paper: psere-Q8GI31 , psest-bpdF |
| Title : Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme) - Habe_2003_Biochem.Biophys.Res.Commun_303_631 |
| Author(s) : Habe H , Morii K , Fushinobu S , Nam JW , Ayabe Y , Yoshida T , Wakagi T , Yamane H , Nojiri H , Omori T |
| Ref : Biochemical & Biophysical Research Communications , 303 :631 , 2003 |
| Abstract : |
| PubMedSearch : Habe_2003_Biochem.Biophys.Res.Commun_303_631 |
| PubMedID: 12659866 |
| Gene_locus related to this paper: jansp-Carc , psest-bpdF |
| Title : Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10 - Nojiri_2002_Biosci.Biotechnol.Biochem_66_897 |
| Author(s) : Nojiri H , Maeda K , Sekiguchi H , Urata M , Shintani M , Yoshida T , Habe H , Omori T |
| Ref : Biosci Biotechnol Biochem , 66 :897 , 2002 |
| Abstract : |
| PubMedSearch : Nojiri_2002_Biosci.Biotechnol.Biochem_66_897 |
| PubMedID: 12036072 |
| Gene_locus related to this paper: psesp-Q9AQQ0 |
| Title : Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products - Fushinobu_2002_Protein.Sci_11_2184 |
| Author(s) : Fushinobu S , Saku T , Hidaka M , Jun SY , Nojiri H , Yamane H , Shoun H , Omori T , Wakagi T |
| Ref : Protein Science , 11 :2184 , 2002 |
| Abstract : |
| PubMedSearch : Fushinobu_2002_Protein.Sci_11_2184 |
| PubMedID: 12192074 |
| Gene_locus related to this paper: psefl-cumD |
| Title : Enhanced degradation of carbazole and 2,3-dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10 - Widada_2002_Chemosphere_49_485 |
| Author(s) : Widada J , Nojiri H , Yoshida T , Habe H , Omori T |
| Ref : Chemosphere , 49 :485 , 2002 |
| Abstract : |
| PubMedSearch : Widada_2002_Chemosphere_49_485 |
| PubMedID: 12363321 |
| Title : Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil - Habe_2002_FEMS.Microbiol.Lett_211_43 |
| Author(s) : Habe H , Ashikawa Y , Saiki Y , Yoshida T , Nojiri H , Omori T |
| Ref : FEMS Microbiology Letters , 211 :43 , 2002 |
| Abstract : |
| PubMedSearch : Habe_2002_FEMS.Microbiol.Lett_211_43 |
| PubMedID: 12052549 |
| Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3 |
| Title : Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10 - Nojiri_2001_J.Bacteriol_183_3663 |
| Author(s) : Nojiri H , Sekiguchi H , Maeda K , Urata M , Nakai S , Yoshida T , Habe H , Omori T |
| Ref : Journal of Bacteriology , 183 :3663 , 2001 |
| Abstract : |
| PubMedSearch : Nojiri_2001_J.Bacteriol_183_3663 |
| PubMedID: 11371531 |
| Gene_locus related to this paper: psesp-Q9AQN6 , psest-bpdF |
| Title : Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63 - Kasuga_2001_Biochem.Biophys.Res.Commun_283_195 |
| Author(s) : Kasuga K , Habe H , Chung JS , Yoshida T , Nojiri H , Yamane H , Omori T |
| Ref : Biochemical & Biophysical Research Communications , 283 :195 , 2001 |
| Abstract : |
| PubMedSearch : Kasuga_2001_Biochem.Biophys.Res.Commun_283_195 |
| PubMedID: 11322788 |
| Gene_locus related to this paper: 9mico-q3mnp3 , tersp-Q93UV1 |
| Title : Bacterial degradation of aromatic compounds via angular dioxygenation - Nojiri_2001_J.Gen.Appl.Microbiol_47_279 |
| Author(s) : Nojiri H , Habe H , Omori T |
| Ref : J Gen Appl Microbiol , 47 :279 , 2001 |
| Abstract : |
| PubMedSearch : Nojiri_2001_J.Gen.Appl.Microbiol_47_279 |
| PubMedID: 12483604 |
| Title : Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase - Sato_1997_J.Bacteriol_179_4841 |
| Author(s) : Sato SI , Ouchiyama N , Kimura T , Nojiri H , Yamane H , Omori T |
| Ref : Journal of Bacteriology , 179 :4841 , 1997 |
| Abstract : |
| PubMedSearch : Sato_1997_J.Bacteriol_179_4841 |
| PubMedID: 9244273 |
| Gene_locus related to this paper: psesp-Q9AQN6 , psest-bpdF |
| Title : Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10 - Sato_1997_J.Bacteriol_179_4850 |
| Author(s) : Sato SI , Nam JW , Kasuga K , Nojiri H , Yamane H , Omori T |
| Ref : Journal of Bacteriology , 179 :4850 , 1997 |
| Abstract : |
| PubMedSearch : Sato_1997_J.Bacteriol_179_4850 |
| PubMedID: 9244274 |
| Gene_locus related to this paper: psesp-Q9AQN6 , psest-bpdF |
| Title : Cloning and characterization of genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63. - |
| Author(s) : Kasuga K , Nojiri H , Yamane H , Kodama T , Omori T |
| Ref : J Ferment Bioeng , 84 :387 , 1997 |
| PubMedID: |
| Gene_locus related to this paper: 9mico-q3mnp3 , tersp-DBFC |
| Title : Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01 - Habe_1996_Appl.Environ.Microbiol_62_4471 |
| Author(s) : Habe H , Kasuga K , Nojiri H , Yamane H , Omori T |
| Ref : Applied Environmental Microbiology , 62 :4471 , 1996 |
| Abstract : |
| PubMedSearch : Habe_1996_Appl.Environ.Microbiol_62_4471 |
| PubMedID: 8953719 |
| Gene_locus related to this paper: psefl-cumD |