Yamane H

References (25)

Title : Characterization of a helminthosporic acid analog that is a selective agonist of gibberellin receptor - Miyazaki_2018_Bioorg.Med.Chem.Lett_28_2465
Author(s) : Miyazaki S , Tomita K , Yamane H , Kobayashi M , Asami T , Nakajima M
Ref : Bioorganic & Medicinal Chemistry Lett , 28 :2465 , 2018
PubMedID: 29907394

Title : Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function - Yun_2010_J.Bacteriol_192_4720
Author(s) : Yun CS , Suzuki C , Naito K , Takeda T , Takahashi Y , Sai F , Terabayashi T , Miyakoshi M , Shintani M , Nishida H , Yamane H , Nojiri H
Ref : Journal of Bacteriology , 192 :4720 , 2010
PubMedID: 20639326
Gene_locus related to this paper: psest-bpdF

Title : Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1 - Shintani_2010_Environ.Microbiol_12_1413
Author(s) : Shintani M , Takahashi Y , Tokumaru H , Kadota K , Hara H , Miyakoshi M , Naito K , Yamane H , Nishida H , Nojiri H
Ref : Environ Microbiol , 12 :1413 , 2010
PubMedID: 19930443
Gene_locus related to this paper: psest-bpdF

Title : The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids - Takahashi_2009_Biosci.Biotechnol.Biochem_73_744
Author(s) : Takahashi Y , Shintani M , Yamane H , Nojiri H
Ref : Biosci Biotechnol Biochem , 73 :744 , 2009
PubMedID: 19270415
Gene_locus related to this paper: psest-bpdF

Title : Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway - Takahashi_2009_Appl.Environ.Microbiol_75_3920
Author(s) : Takahashi Y , Shintani M , Li L , Yamane H , Nojiri H
Ref : Applied Environmental Microbiology , 75 :3920 , 2009
PubMedID: 19376894
Gene_locus related to this paper: psest-bpdF

Title : High-resolution mapping of plasmid transcriptomes in different host bacteria - Miyakoshi_2009_BMC.Genomics_10_12
Author(s) : Miyakoshi M , Nishida H , Shintani M , Yamane H , Nojiri H
Ref : BMC Genomics , 10 :12 , 2009
PubMedID: 19134166
Gene_locus related to this paper: psest-bpdF

Title : The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole - Shintani_2007_J.Bacteriol_189_2007
Author(s) : Shintani M , Urata M , Inoue K , Eto K , Habe H , Omori T , Yamane H , Nojiri H
Ref : Journal of Bacteriology , 189 :2007 , 2007
PubMedID: 17172338
Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3

Title : Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate - Urata_2006_Appl.Environ.Microbiol_72_3198
Author(s) : Urata M , Uchimura H , Noguchi H , Sakaguchi T , Takemura T , Eto K , Habe H , Omori T , Yamane H , Nojiri H
Ref : Applied Environmental Microbiology , 72 :3198 , 2006
PubMedID: 16672458
Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3

Title : Characterization of novel carbazole catabolism genes from gram-positive carbazole degrader Nocardioides aromaticivorans IC177 - Inoue_2006_Appl.Environ.Microbiol_72_3321
Author(s) : Inoue K , Habe H , Yamane H , Nojiri H
Ref : Applied Environmental Microbiology , 72 :3321 , 2006
PubMedID: 16672473
Gene_locus related to this paper: 9acto-q2hwh9

Title : Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium - Inoue_2005_FEMS.Microbiol.Lett_245_145
Author(s) : Inoue K , Habe H , Yamane H , Omori T , Nojiri H
Ref : FEMS Microbiology Letters , 245 :145 , 2005
PubMedID: 15796992
Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3

Title : Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains - Shintani_2005_Biotechnol.Lett_27_1847
Author(s) : Shintani M , Habe H , Tsuda M , Omori T , Yamane H , Nojiri H
Ref : Biotechnol Lett , 27 :1847 , 2005
PubMedID: 16328978
Gene_locus related to this paper: psest-bpdF

Title : A series of crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with various cleavage products - Fushinobu_2005_Biosci.Biotechnol.Biochem_69_491
Author(s) : Fushinobu S , Jun SY , Hidaka M , Nojiri H , Yamane H , Shoun H , Omori T , Wakagi T
Ref : Biosci Biotechnol Biochem , 69 :491 , 2005
PubMedID: 15784976
Gene_locus related to this paper: psefl-cumD

Title : Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63 - Takagi_2005_Appl.Microbiol.Biotechnol_68_336
Author(s) : Takagi T , Habe H , Yoshida T , Yamane H , Omori T , Nojiri H
Ref : Applied Microbiology & Biotechnology , 68 :336 , 2005
PubMedID: 15717172
Gene_locus related to this paper: 9mico-q3mnp3

Title : The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria - Habe_2005_Microbiology_151_3713
Author(s) : Habe H , Chung JS , Ishida A , Kasuga K , Ide K , Takemura T , Nojiri H , Yamane H , Omori T
Ref : Microbiology , 151 :3713 , 2005
PubMedID: 16272392
Gene_locus related to this paper: 9mico-q3mnp3

Title : Preparation and biological activity of molecular probes to identify and analyze jasmonic acid-binding proteins - Jikumaru_2004_Biosci.Biotechnol.Biochem_68_1461
Author(s) : Jikumaru Y , Asami T , Seto H , Yoshida S , Yokoyama T , Obara N , Hasegawa M , Kodama O , Nishiyama M , Okada K , Nojiri H , Yamane H
Ref : Biosci Biotechnol Biochem , 68 :1461 , 2004
PubMedID: 15277750

Title : Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63 - Habe_2004_J.Bacteriol_186_5938
Author(s) : Habe H , Chung JS , Kato H , Ayabe Y , Kasuga K , Yoshida T , Nojiri H , Yamane H , Omori T
Ref : Journal of Bacteriology , 186 :5938 , 2004
PubMedID: 15317800
Gene_locus related to this paper: 9mico-q3mnp3

Title : Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10 - Nojiri_2003_Biosci.Biotechnol.Biochem_67_36
Author(s) : Nojiri H , Taira H , Iwata K , Morii K , Nam JW , Yoshida T , Habe H , Nakamura S , Shimizu K , Yamane H , Omori T
Ref : Biosci Biotechnol Biochem , 67 :36 , 2003
PubMedID: 12619671
Gene_locus related to this paper: psesp-Q9AQN6

Title : Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme) - Habe_2003_Biochem.Biophys.Res.Commun_303_631
Author(s) : Habe H , Morii K , Fushinobu S , Nam JW , Ayabe Y , Yoshida T , Wakagi T , Yamane H , Nojiri H , Omori T
Ref : Biochemical & Biophysical Research Communications , 303 :631 , 2003
PubMedID: 12659866
Gene_locus related to this paper: jansp-Carc , psest-bpdF

Title : The genome sequence and structure of rice chromosome 1 - Sasaki_2002_Nature_420_312
Author(s) : Sasaki T , Matsumoto T , Yamamoto K , Sakata K , Baba T , Katayose Y , Wu J , Niimura Y , Cheng Z , Nagamura Y , Antonio BA , Kanamori H , Hosokawa S , Masukawa M , Arikawa K , Chiden Y , Hayashi M , Okamoto M , Ando T , Aoki H , Arita K , Hamada M , Harada C , Hijishita S , Honda M , Ichikawa Y , Idonuma A , Iijima M , Ikeda M , Ikeno M , Ito S , Ito T , Ito Y , Iwabuchi A , Kamiya K , Karasawa W , Katagiri S , Kikuta A , Kobayashi N , Kono I , Machita K , Maehara T , Mizuno H , Mizubayashi T , Mukai Y , Nagasaki H , Nakashima M , Nakama Y , Nakamichi Y , Nakamura M , Namiki N , Negishi M , Ohta I , Ono N , Saji S , Sakai K , Shibata M , Shimokawa T , Shomura A , Song J , Takazaki Y , Terasawa K , Tsuji K , Waki K , Yamagata H , Yamane H , Yoshiki S , Yoshihara R , Yukawa K , Zhong H , Iwama H , Endo T , Ito H , Hahn JH , Kim HI , Eun MY , Yano M , Jiang J , Gojobori T
Ref : Nature , 420 :312 , 2002
PubMedID: 12447438
Gene_locus related to this paper: orysa-Q9S7P1 , orysa-Q9FYP7 , orysa-Q5ZBH3 , orysa-Q5NA74 , orysa-Q5ZA26 , orysa-Q5JLP6 , orysa-Q94D81 , orysa-cbp , orysa-Q5VQE5 , orysa-Q8RZ95 , orysa-Q9AWW1 , orysa-Q9AS70 , orysa-Q0JK71 , orysa-Q8S1D9 , orysa-Q5N8V4 , orysa-Q943F9 , orysa-B9EWJ8 , orysa-Q5N8H1 , orysa-Q5NAI4 , orysa-Q94DP8 , orysa-Q658B2 , orysa-Q5JMQ8 , orysa-Q5QMD9 , orysa-Q5N7L1 , orysa-Q5N7J6 , orysa-Q8RYV9 , orysa-Q5SNH3 , orysa-Q94DD0 , orysa-Q8W0F0 , orysa-pir7a , orysa-pir7b , orysa-Q4VWY7 , orysa-q5jlm9 , orysa-q5na00 , orysa-q5nbu1 , orysa-Q5QLC0 , orysa-q5vnp5 , orysa-Q5VP27 , orysa-Q5ZAM8 , orysa-Q5ZBI5 , orysa-q5zc23 , orysa-Q5ZCR3 , orysa-Q8L562 , orysa-Q8L570 , orysa-Q8LQS5 , orysa-Q8RZ40 , orysa-Q8RZ79 , orysa-Q8S0U8 , orysa-Q8S0V0 , orysa-Q8S125 , orysa-Q9LHX5 , orysa-Q94E46 , orysa-Q656F2 , orysi-a2wn01 , orysi-b8a7e6 , orysi-b8a7e7 , orysj-b9eya5 , orysj-q5jl22 , orysj-q5jlw7 , orysj-q94d71

Title : Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products - Fushinobu_2002_Protein.Sci_11_2184
Author(s) : Fushinobu S , Saku T , Hidaka M , Jun SY , Nojiri H , Yamane H , Shoun H , Omori T , Wakagi T
Ref : Protein Science , 11 :2184 , 2002
PubMedID: 12192074
Gene_locus related to this paper: psefl-cumD

Title : Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63 - Kasuga_2001_Biochem.Biophys.Res.Commun_283_195
Author(s) : Kasuga K , Habe H , Chung JS , Yoshida T , Nojiri H , Yamane H , Omori T
Ref : Biochemical & Biophysical Research Communications , 283 :195 , 2001
PubMedID: 11322788
Gene_locus related to this paper: 9mico-q3mnp3 , tersp-Q93UV1

Title : Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase - Sato_1997_J.Bacteriol_179_4841
Author(s) : Sato SI , Ouchiyama N , Kimura T , Nojiri H , Yamane H , Omori T
Ref : Journal of Bacteriology , 179 :4841 , 1997
PubMedID: 9244273
Gene_locus related to this paper: psesp-Q9AQN6 , psest-bpdF

Title : Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10 - Sato_1997_J.Bacteriol_179_4850
Author(s) : Sato SI , Nam JW , Kasuga K , Nojiri H , Yamane H , Omori T
Ref : Journal of Bacteriology , 179 :4850 , 1997
PubMedID: 9244274
Gene_locus related to this paper: psesp-Q9AQN6 , psest-bpdF

Title : Cloning and characterization of genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63. -
Author(s) : Kasuga K , Nojiri H , Yamane H , Kodama T , Omori T
Ref : J Ferment Bioeng , 84 :387 , 1997
PubMedID:
Gene_locus related to this paper: 9mico-q3mnp3 , tersp-DBFC

Title : Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01 - Habe_1996_Appl.Environ.Microbiol_62_4471
Author(s) : Habe H , Kasuga K , Nojiri H , Yamane H , Omori T
Ref : Applied Environmental Microbiology , 62 :4471 , 1996
PubMedID: 8953719
Gene_locus related to this paper: psefl-cumD