Omori T

References (33)

Title : Cloning and nucleotide sequences of carbazole degradation genes from marine bacterium Neptuniibacter sp. strain CAR-SF - Nagashima_2010_Curr.Microbiol_61_50
Author(s) : Nagashima H , Zulkharnain AB , Maeda R , Fuse H , Iwata K , Omori T
Ref : Curr Microbiol , 61 :50 , 2010
PubMedID: 20039169
Gene_locus related to this paper: 9gamm-b2dd14

Title : Isolation and characterization of a car gene cluster from the naphthalene, phenanthrene, and carbazole-degrading marine isolate Lysobacter sp. strain OC7 - Maeda_2009_Curr.Microbiol_59_154
Author(s) : Maeda R , Nagashima H , Zulkharnain AB , Iwata K , Omori T
Ref : Curr Microbiol , 59 :154 , 2009
PubMedID: 19452212
Gene_locus related to this paper: 9gamm-c1phw8

Title : The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole - Shintani_2007_J.Bacteriol_189_2007
Author(s) : Shintani M , Urata M , Inoue K , Eto K , Habe H , Omori T , Yamane H , Nojiri H
Ref : Journal of Bacteriology , 189 :2007 , 2007
PubMedID: 17172338
Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3

Title : Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate - Urata_2006_Appl.Environ.Microbiol_72_3198
Author(s) : Urata M , Uchimura H , Noguchi H , Sakaguchi T , Takemura T , Eto K , Habe H , Omori T , Yamane H , Nojiri H
Ref : Applied Environmental Microbiology , 72 :3198 , 2006
PubMedID: 16672458
Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3

Title : Improving the catalytic efficiency of a meta-cleavage product hydrolase (CumD) from Pseudomonas fluorescens IP01 - Jun_2006_Biochim.Biophys.Acta_1764_1159
Author(s) : Jun SY , Fushinobu S , Nojiri H , Omori T , Shoun H , Wakagi T
Ref : Biochimica & Biophysica Acta , 1764 :1159 , 2006
PubMedID: 16844437
Gene_locus related to this paper: psefl-cumD

Title : Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium - Inoue_2005_FEMS.Microbiol.Lett_245_145
Author(s) : Inoue K , Habe H , Yamane H , Omori T , Nojiri H
Ref : FEMS Microbiology Letters , 245 :145 , 2005
PubMedID: 15796992
Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3

Title : Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole\/dioxin-degradative car gene cluster in different bacteria - Shintani_2005_Appl.Microbiol.Biotechnol_67_370
Author(s) : Shintani M , Yoshida T , Habe H , Omori T , Nojiri H
Ref : Applied Microbiology & Biotechnology , 67 :370 , 2005
PubMedID: 15856217
Gene_locus related to this paper: psest-bpdF

Title : Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains - Shintani_2005_Biotechnol.Lett_27_1847
Author(s) : Shintani M , Habe H , Tsuda M , Omori T , Yamane H , Nojiri H
Ref : Biotechnol Lett , 27 :1847 , 2005
PubMedID: 16328978
Gene_locus related to this paper: psest-bpdF

Title : Secretion of bacterial xenobiotic-degrading enzymes from transgenic plants by an apoplastic expressional system: an applicability for phytoremediation - Uchida_2005_Environ.Sci.Technol_39_7671
Author(s) : Uchida E , Ouchi T , Suzuki Y , Yoshida T , Habe H , Yamaguchi I , Omori T , Nojiri H
Ref : Environ Sci Technol , 39 :7671 , 2005
PubMedID: 16245843

Title : A series of crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with various cleavage products - Fushinobu_2005_Biosci.Biotechnol.Biochem_69_491
Author(s) : Fushinobu S , Jun SY , Hidaka M , Nojiri H , Yamane H , Shoun H , Omori T , Wakagi T
Ref : Biosci Biotechnol Biochem , 69 :491 , 2005
PubMedID: 15784976
Gene_locus related to this paper: psefl-cumD

Title : Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63 - Takagi_2005_Appl.Microbiol.Biotechnol_68_336
Author(s) : Takagi T , Habe H , Yoshida T , Yamane H , Omori T , Nojiri H
Ref : Applied Microbiology & Biotechnology , 68 :336 , 2005
PubMedID: 15717172
Gene_locus related to this paper: 9mico-q3mnp3

Title : The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria - Habe_2005_Microbiology_151_3713
Author(s) : Habe H , Chung JS , Ishida A , Kasuga K , Ide K , Takemura T , Nojiri H , Yamane H , Omori T
Ref : Microbiology , 151 :3713 , 2005
PubMedID: 16272392
Gene_locus related to this paper: 9mico-q3mnp3

Title : Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria - Inoue_2004_Biosci.Biotechnol.Biochem_68_1467
Author(s) : Inoue K , Widada J , Nakai S , Endoh T , Urata M , Ashikawa Y , Shintani M , Saiki Y , Yoshida T , Habe H , Omori T , Nojiri H
Ref : Biosci Biotechnol Biochem , 68 :1467 , 2004
PubMedID: 15277751
Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3

Title : Genetic characterization of the dibenzofuran-degrading Actinobacteria carrying the dbfA1A2 gene homologues isolated from activated sludge - Noumura_2004_FEMS.Microbiol.Lett_239_147
Author(s) : Noumura T , Habe H , Widada J , Chung JS , Yoshida T , Nojiri H , Omori T
Ref : FEMS Microbiology Letters , 239 :147 , 2004
PubMedID: 15451113
Gene_locus related to this paper: 9mico-q3mnp3 , rhosp-ORF4

Title : Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63 - Habe_2004_J.Bacteriol_186_5938
Author(s) : Habe H , Chung JS , Kato H , Ayabe Y , Kasuga K , Yoshida T , Nojiri H , Yamane H , Omori T
Ref : Journal of Bacteriology , 186 :5938 , 2004
PubMedID: 15317800
Gene_locus related to this paper: 9mico-q3mnp3

Title : Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10 - Nojiri_2003_Biosci.Biotechnol.Biochem_67_36
Author(s) : Nojiri H , Taira H , Iwata K , Morii K , Nam JW , Yoshida T , Habe H , Nakamura S , Shimizu K , Yamane H , Omori T
Ref : Biosci Biotechnol Biochem , 67 :36 , 2003
PubMedID: 12619671
Gene_locus related to this paper: psesp-Q9AQN6

Title : Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme) - Habe_2003_Biochem.Biophys.Res.Commun_303_631
Author(s) : Habe H , Morii K , Fushinobu S , Nam JW , Ayabe Y , Yoshida T , Wakagi T , Yamane H , Nojiri H , Omori T
Ref : Biochemical & Biophysical Research Communications , 303 :631 , 2003
PubMedID: 12659866
Gene_locus related to this paper: jansp-Carc , psest-bpdF

Title : Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2 - Pinyakong_2003_Biochem.Biophys.Res.Commun_301_350
Author(s) : Pinyakong O , Habe H , Yoshida T , Nojiri H , Omori T
Ref : Biochemical & Biophysical Research Communications , 301 :350 , 2003
PubMedID: 12565867
Gene_locus related to this paper: psepa-q6qhu7

Title : Complete nucleotide sequence of carbazole\/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676 - Maeda_2003_J.Mol.Biol_326_21
Author(s) : Maeda K , Nojiri H , Shintani M , Yoshida T , Habe H , Omori T
Ref : Journal of Molecular Biology , 326 :21 , 2003
PubMedID: 12547188
Gene_locus related to this paper: psere-Q8GI31 , psest-bpdF

Title : Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63 - Habe_2003_Appl.Microbiol.Biotechnol_61_44
Author(s) : Habe H , Miyakoshi M , Chung J , Kasuga K , Yoshida T , Nojiri H , Omori T
Ref : Applied Microbiology & Biotechnology , 61 :44 , 2003
PubMedID: 12658514
Gene_locus related to this paper: 9mico-q3mnp3

Title : Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil - Habe_2002_FEMS.Microbiol.Lett_211_43
Author(s) : Habe H , Ashikawa Y , Saiki Y , Yoshida T , Nojiri H , Omori T
Ref : FEMS Microbiology Letters , 211 :43 , 2002
PubMedID: 12052549
Gene_locus related to this paper: 9sphn-q0kj70 , 9sphn-q0kjk5 , 9sphn-q0kjm1 , 9sphn-q0kjt3 , 9sphn-q2pfa3

Title : Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10 - Nojiri_2002_Biosci.Biotechnol.Biochem_66_897
Author(s) : Nojiri H , Maeda K , Sekiguchi H , Urata M , Shintani M , Yoshida T , Habe H , Omori T
Ref : Biosci Biotechnol Biochem , 66 :897 , 2002
PubMedID: 12036072
Gene_locus related to this paper: psesp-Q9AQQ0

Title : Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products - Fushinobu_2002_Protein.Sci_11_2184
Author(s) : Fushinobu S , Saku T , Hidaka M , Jun SY , Nojiri H , Yamane H , Shoun H , Omori T , Wakagi T
Ref : Protein Science , 11 :2184 , 2002
PubMedID: 12192074
Gene_locus related to this paper: psefl-cumD

Title : Enhanced degradation of carbazole and 2,3-dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10 - Widada_2002_Chemosphere_49_485
Author(s) : Widada J , Nojiri H , Yoshida T , Habe H , Omori T
Ref : Chemosphere , 49 :485 , 2002
PubMedID: 12363321

Title : Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10 - Nojiri_2001_J.Bacteriol_183_3663
Author(s) : Nojiri H , Sekiguchi H , Maeda K , Urata M , Nakai S , Yoshida T , Habe H , Omori T
Ref : Journal of Bacteriology , 183 :3663 , 2001
PubMedID: 11371531
Gene_locus related to this paper: psesp-Q9AQN6 , psest-bpdF

Title : Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63 - Kasuga_2001_Biochem.Biophys.Res.Commun_283_195
Author(s) : Kasuga K , Habe H , Chung JS , Yoshida T , Nojiri H , Yamane H , Omori T
Ref : Biochemical & Biophysical Research Communications , 283 :195 , 2001
PubMedID: 11322788
Gene_locus related to this paper: 9mico-q3mnp3 , tersp-Q93UV1

Title : Bacterial degradation of aromatic compounds via angular dioxygenation - Nojiri_2001_J.Gen.Appl.Microbiol_47_279
Author(s) : Nojiri H , Habe H , Omori T
Ref : J Gen Appl Microbiol , 47 :279 , 2001
PubMedID: 12483604

Title : Cloning and nucleotide sequence of carbazole catabolic genes from Pseudomonas stutzeri strain OM1, isolated from activated sludge - Ouchiyama_1998_J.Gen.Appl.Microbiol_44_57
Author(s) : Ouchiyama N , Miyachi S , Omori T
Ref : J Gen Appl Microbiol , 44 :57 , 1998
PubMedID: 12501294
Gene_locus related to this paper: psest-bpdF

Title : Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase - Sato_1997_J.Bacteriol_179_4841
Author(s) : Sato SI , Ouchiyama N , Kimura T , Nojiri H , Yamane H , Omori T
Ref : Journal of Bacteriology , 179 :4841 , 1997
PubMedID: 9244273
Gene_locus related to this paper: psesp-Q9AQN6 , psest-bpdF

Title : Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10 - Sato_1997_J.Bacteriol_179_4850
Author(s) : Sato SI , Nam JW , Kasuga K , Nojiri H , Yamane H , Omori T
Ref : Journal of Bacteriology , 179 :4850 , 1997
PubMedID: 9244274
Gene_locus related to this paper: psesp-Q9AQN6 , psest-bpdF

Title : Cloning and characterization of genes involved in the degradation of dibenzofuran by Terrabacter sp. strain DBF63. -
Author(s) : Kasuga K , Nojiri H , Yamane H , Kodama T , Omori T
Ref : J Ferment Bioeng , 84 :387 , 1997
PubMedID:
Gene_locus related to this paper: 9mico-q3mnp3 , tersp-DBFC

Title : Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01 - Habe_1996_Appl.Environ.Microbiol_62_4471
Author(s) : Habe H , Kasuga K , Nojiri H , Yamane H , Omori T
Ref : Applied Environmental Microbiology , 62 :4471 , 1996
PubMedID: 8953719
Gene_locus related to this paper: psefl-cumD