Studholme DJ

Title : Intraspecific diversification of the crop wild relative Brassica cretica Lam. using demographic model selection - Kioukis_2020_BMC.Genomics_21_48

Author(s) : Kioukis A , Michalopoulou VA , Briers L , Pirintsos S , Studholme DJ , Pavlidis P , Sarris PF

Ref : BMC Genomics , 21 :48 , 2020

Abstract : Kioukis_2020_BMC.Genomics_21_48

ESTHER : Kioukis_2020_BMC.Genomics_21_48

PubMedSearch : Kioukis_2020_BMC.Genomics_21_48

PubMedID: 31937246

Gene_locus related to this paper: bracr-a0a3n6rng7 , bracr-a0a3n6rj72

Title : Genome sequence data from 17 accessions of Ensete ventricosum, a staple food crop for millions in Ethiopia - Yemataw_2018_Data.Brief_18_285

Author(s) : Yemataw Z , Muzemil S , Ambachew D , Tripathi L , Tesfaye K , Chala A , Farbos A , O'Neill P , Moore K , Grant M , Studholme DJ

Ref : Data Brief , 18 :285 , 2018

Abstract : Yemataw_2018_Data.Brief_18_285

ESTHER : Yemataw_2018_Data.Brief_18_285

PubMedSearch : Yemataw_2018_Data.Brief_18_285

PubMedID: 29896517

Gene_locus related to this paper: ensve-a0a444fr62

Title : Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards - Khan_2013_World.J.Microbiol.Biotechnol_29_2033

Author(s) : Khan A , Asif H , Studholme DJ , Khan IA , Azim MK

Ref : World J Microbiol Biotechnol , 29 :2033 , 2013

Abstract : Khan_2013_World.J.Microbiol.Biotechnol_29_2033

ESTHER : Khan_2013_World.J.Microbiol.Biotechnol_29_2033

PubMedSearch : Khan_2013_World.J.Microbiol.Biotechnol_29_2033

PubMedID: 23653265

Gene_locus related to this paper: 9burk-a0u8m3 , 9burk-f0g8l1

Title : Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen xanthomonas campestris pathovar musacearum - Wasukira_2012_Genes.(Basel)_3_361

Author(s) : Wasukira A , Tayebwa J , Thwaites R , Paszkiewicz K , Aritua V , Kubiriba J , Smith J , Grant M , Studholme DJ

Ref : Genes (Basel) , 3 :361 , 2012

Abstract : Wasukira_2012_Genes.(Basel)_3_361

ESTHER : Wasukira_2012_Genes.(Basel)_3_361

PubMedSearch : Wasukira_2012_Genes.(Basel)_3_361

PubMedID: 24704974

Gene_locus related to this paper: xanax-estA1 , xanor-q5h5n1 , xanca-a0a084kxz5 , xanva-a0a0a3gsg4 , xanca-a0a0e2yn33 , xanva-a0a0n2s8c2

Title : Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana - Kemen_2011_PLoS.Biol_9_e1001094

Author(s) : Kemen E , Gardiner A , Schultz-Larsen T , Kemen AC , Balmuth AL , Robert-Seilaniantz A , Bailey K , Holub E , Studholme DJ , Maclean D , Jones JD

Ref : PLoS Biol , 9 :e1001094 , 2011

Abstract : Kemen_2011_PLoS.Biol_9_e1001094

ESTHER : Kemen_2011_PLoS.Biol_9_e1001094

PubMedSearch : Kemen_2011_PLoS.Biol_9_e1001094

PubMedID: 21750662

Gene_locus related to this paper: 9stra-f0vzr0 , 9stra-f0w3s0 , 9stra-f0whp7 , 9stra-f0wif4 , 9stra-f0wjy6 , 9stra-f0wpr6 , 9stra-f0wq48 , 9stra-f0wq49 , 9stra-f0wr05 , 9stra-f0wve8 , 9stra-f0wx44 , 9stra-f0wzn9 , 9stra-f0we19 , 9stra-f0wqy5 , 9stra-f0w333

Title : Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans - Haas_2009_Nature_461_393

Author(s) : Haas BJ , Kamoun S , Zody MC , Jiang RH , Handsaker RE , Cano LM , Grabherr M , Kodira CD , Raffaele S , Torto-Alalibo T , Bozkurt TO , Ah-Fong AM , Alvarado L , Anderson VL , Armstrong MR , Avrova A , Baxter L , Beynon J , Boevink PC , Bollmann SR , Bos JI , Bulone V , Cai G , Cakir C , Carrington JC , Chawner M , Conti L , Costanzo S , Ewan R , Fahlgren N , Fischbach MA , Fugelstad J , Gilroy EM , Gnerre S , Green PJ , Grenville-Briggs LJ , Griffith J , Grunwald NJ , Horn K , Horner NR , Hu CH , Huitema E , Jeong DH , Jones AM , Jones JD , Jones RW , Karlsson EK , Kunjeti SG , Lamour K , Liu Z , Ma L , Maclean D , Chibucos MC , McDonald H , McWalters J , Meijer HJ , Morgan W , Morris PF , Munro CA , O'Neill K , Ospina-Giraldo M , Pinzon A , Pritchard L , Ramsahoye B , Ren Q , Restrepo S , Roy S , Sadanandom A , Savidor A , Schornack S , Schwartz DC , Schumann UD , Schwessinger B , Seyer L , Sharpe T , Silvar C , Song J , Studholme DJ , Sykes S , Thines M , van de Vondervoort PJ , Phuntumart V , Wawra S , Weide R , Win J , Young C , Zhou S , Fry W , Meyers BC , van West P , Ristaino J , Govers F , Birch PR , Whisson SC , Judelson HS , Nusbaum C

Ref : Nature , 461 :393 , 2009

Abstract : Haas_2009_Nature_461_393

ESTHER : Haas_2009_Nature_461_393

PubMedSearch : Haas_2009_Nature_461_393

PubMedID: 19741609

Gene_locus related to this paper: phyin-ENDO2 , phyin-q2m440 , phyin-q58g92 , phyit-d0mqp1 , phyit-d0mqp2 , phyit-d0mt75 , phyit-d0muv1 , phyit-d0mv34 , phyit-d0mv35 , phyit-d0mwf9 , phyit-d0mxu5 , phyit-d0n935 , phyit-d0nax9 , phyit-d0nfs3 , phyit-d0nhj2 , phyit-d0nhj4 , phyit-d0nhj8 , phyit-d0ni28 , phyit-d0nj14 , phyit-d0nj53 , phyit-d0nj54 , phyit-d0njf2 , phyit-d0nkm4 , phyit-d0nr53 , phyit-d0nrb1 , phyit-d0nrk9 , phyit-d0nrl4 , phyit-d0ns26 , phyit-d0ns42 , phyit-d0ns43 , phyit-d0nsr8 , phyit-d0nu41 , phyit-d0nvt3 , phyit-d0nwb6 , phyit-d0nwm8 , phyit-d0nzc0 , phyit-d0nzc1 , phyit-d0p0z1 , phyit-d0p3z2 , phyit-kex1 , phyit-d0n6q6 , phyit-d0n4i8 , phyit-d0mqf7 , phyit-d0n5g6

Title : Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes - Setubal_2009_J.Bacteriol_191_4534

Author(s) : Setubal JC , dos Santos P , Goldman BS , Ertesvag H , Espin G , Rubio LM , Valla S , Almeida NF , Balasubramanian D , Cromes L , Curatti L , Du Z , Godsy E , Goodner B , Hellner-Burris K , Hernandez JA , Houmiel K , Imperial J , Kennedy C , Larson TJ , Latreille P , Ligon LS , Lu J , Maerk M , Miller NM , Norton S , O'Carroll IP , Paulsen I , Raulfs EC , Roemer R , Rosser J , Segura D , Slater S , Stricklin SL , Studholme DJ , Sun J , Viana CJ , Wallin E , Wang B , Wheeler C , Zhu H , Dean DR , Dixon R , Wood D

Ref : Journal of Bacteriology , 191 :4534 , 2009

Abstract : Setubal_2009_J.Bacteriol_191_4534

ESTHER : Setubal_2009_J.Bacteriol_191_4534

PubMedSearch : Setubal_2009_J.Bacteriol_191_4534

PubMedID: 19429624

Gene_locus related to this paper: azovd-c1dex6 , azovd-c1df21 , azovd-c1dfb5 , azovd-c1dg75 , azovd-c1dgm6 , azovd-c1dh91 , azovd-c1di03 , azovd-c1dib3 , azovd-c1dif2 , azovd-c1dIq5 , azovd-c1dir1 , azovd-c1dis2 , azovd-c1djq5 , azovd-c1djw3 , azovd-c1dk37 , azovd-c1dkb2 , azovd-c1dkj0 , azovd-c1dli6 , azovd-c1dng8 , azovd-c1dni5 , azovd-c1dpr0 , azovd-c1dqu3 , azovd-c1dri5 , azovd-c1drx0 , azovd-c1dsl7 , azovd-c1dsq7 , azovd-c1dss1 , azovd-metx , azovi-PHBC , azovd-c1dem4

Title : A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000 - Almeida_2009_Mol.Plant.Microbe.Interact_22_52

Author(s) : Almeida NF , Yan S , Lindeberg M , Studholme DJ , Schneider DJ , Condon B , Liu H , Viana CJ , Warren A , Evans C , Kemen E , Maclean D , Angot A , Martin GB , Jones JD , Collmer A , Setubal JC , Vinatzer BA

Ref : Mol Plant Microbe Interact , 22 :52 , 2009

Abstract : Almeida_2009_Mol.Plant.Microbe.Interact_22_52

ESTHER : Almeida_2009_Mol.Plant.Microbe.Interact_22_52

PubMedSearch : Almeida_2009_Mol.Plant.Microbe.Interact_22_52

PubMedID: 19061402

Gene_locus related to this paper: pse14-q48ia0 , psesm-e2mn04 , psesm-IRP1 , psesm-METX , psesm-q88a39 , psesm-q881b4 , psesy-ESTA , psesy-IRP4 , psesy-PIP , psesy-PSPTO0421 , psesy-PSPTO0508 , psesy-PSPTO1504 , psesy-PSPTO1559 , psesy-PSPTO1766 , psesy-PSPTO2005 , psesy-PSPTO2134 , psesy-PSPTO2150 , psesy-PSPTO3135 , psesy-PSPTO3138 , psesy-PSPTO3306 , psesy-PSPTO4277 , psesy-PSPTO4519 , psesy-PSPTO4540 , psesy-PSPTO4964 , psesy-PSPTO5299 , psesy-PSPTO5537 , pseub-e2mf08

Title : Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana - Jones_2009_J.Proteomics_72_439

Author(s) : Jones AM , Maclean D , Studholme DJ , Serna-Sanz A , Andreasson E , Rathjen JP , Peck SC

Ref : J Proteomics , 72 :439 , 2009

Abstract : Jones_2009_J.Proteomics_72_439

ESTHER : Jones_2009_J.Proteomics_72_439

PubMedSearch : Jones_2009_J.Proteomics_72_439

PubMedID: 19245862

Gene_locus related to this paper: arath-q84w08 , arath-MES14

Title : Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants - Maor_2007_Mol.Cell.Proteomics_6_601

Author(s) : Maor R , Jones A , Nuhse TS , Studholme DJ , Peck SC , Shirasu K

Ref : Mol Cell Proteomics , 6 :601 , 2007

Abstract : Maor_2007_Mol.Cell.Proteomics_6_601

ESTHER : Maor_2007_Mol.Cell.Proteomics_6_601

PubMedSearch : Maor_2007_Mol.Cell.Proteomics_6_601

PubMedID: 17272265

Gene_locus related to this paper: arath-PLA19

Studholme DJ

References (10)

1. Intraspecific diversification of the crop wild relative Brassica cretica Lam. using demographic model selection

2. Genome sequence data from 17 accessions of Ensete ventricosum, a staple food crop for millions in Ethiopia

3. Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards

4. Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen xanthomonas campestris pathovar musacearum

5. Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana

6. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

7. Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes

8. A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000

9. Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana

10. Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants