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psepf-PHAZ

Pseudomonas fluorescens, Pseudomonas mediterranea, Pseudomonas corrugata, Pseudomonas sp., Comamonas testosteroni (Pseudomonas testosteroni), Pseudomonas chlororaphis (Pseudomonas aureofaciens), Pseudomonas brassicacearum, poly(3-hydroxyalkanoate) depolymerase

Comment

Other strains: Pseudomonas fluorescens (strains PfO-1\; Pf-5 \/ ATCC BAA-477\; SBW25), Pseudomonas mediterranea, Pseudomonas corrugata, Pseudomonas sp. (KBOS 04\; KBOS 17\; KBOS 03\; PC17\; 61-3\; HBQ06), Comamonas testosteroni (Pseudomonas testosteroni), Pseudomonas chlororaphis (Pseudomonas aureofaciens), Pseudomonas brassicacearum (strain NFM421) || Pseudomonas brassicacearum (strain NFM421), Pseudomonas chlororaphis subsp. aureofaciens, Pseudomonas fluorescens (strain SBW25)

Relationship

Family : PHA_depolymerase_arom

Block : X

Position in NCBI Life Tree : Pseudomonas fluorescens

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)

> cellular organisms N E > Bacteria N E > Proteobacteria N E > Gammaproteobacteria N E > Pseudomonadales N E > Pseudomonadaceae N E > Pseudomonas N E > Pseudomonas fluorescens group N E > Pseudomonas fluorescens N E

Molecular evidence

No mutation

No structure

No kinetic

No disease

No substrate

No inhibitor

Database

Sequence

Peptide

MPHPFIFRTV ELDGQTIRTA VRPGKPHLTP LLIFNGIGAN LELVFPFVAA LDPDLEVIAF DVPGVGGSST PSRPYRFPGL AKLTARMLDY LDYGQVNVIG VSWGGALAQQ FAYDYPERCK KLVLAATAAG AVMVPGKPKV LWMMASPRRY IQPSHVIRIA PMIYGGSFRR DPTLAASHAA KVRSAGKLGY YWQLFAGLGW TSIHWLHKIH QPTLVLAGDD DPLIPLINMR MLAWRIPNAQ LHIIDDGHLF LITRAEAVAP IIMKFLQEER QRAVMHPHPT PLGG

References (6)

Title : Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum - Ortet_2011_J.Bacteriol_193_3146
Author(s) : Ortet P , Barakat M , Lalaouna D , Fochesato S , Barbe V , Vacherie B , Santaella C , Heulin T , Achouak W
Ref : Journal of Bacteriology , 193 :3146 , 2011
Abstract :
PubMedSearch : Ortet_2011_J.Bacteriol_193_3146
PubMedID: 21515771
Gene_locus related to this paper: psebn-f2k6b7 , psebn-f2k6e0 , psebn-f2kcw9 , psebn-f2kd12 , psebn-f2khr7 , psebr-lipa , psepf-PHAZ , psebn-f2k9f6 , 9psed-s6i647

Title : Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5 - Paulsen_2005_Nat.Biotechnol_23_873
Author(s) : Paulsen IT , Press CM , Ravel J , Kobayashi DY , Myers GS , Mavrodi DV , DeBoy RT , Seshadri R , Ren Q , Madupu R , Dodson RJ , Durkin AS , Brinkac LM , Daugherty SC , Sullivan SA , Rosovitz MJ , Gwinn ML , Zhou L , Schneider DJ , Cartinhour SW , Nelson WC , Weidman J , Watkins K , Tran K , Khouri H , Pierson EA , Pierson LS, 3rd , Thomashow LS , Loper JE
Ref : Nat Biotechnol , 23 :873 , 2005
Abstract :
PubMedSearch : Paulsen_2005_Nat.Biotechnol_23_873
PubMedID: 15980861
Gene_locus related to this paper: psef5-metx , psef5-q4k3c9 , psef5-q4k4b4 , psef5-q4k4t4 , psef5-q4k4u7 , psef5-q4k4y2 , psef5-q4k5b5 , psef5-q4k5k6 , psef5-q4k5w4 , psef5-q4k6z9 , psef5-q4k7i6 , psef5-q4k7u9 , psef5-q4k8j2 , psef5-q4k9i3 , psef5-q4k458 , psef5-q4k713 , psef5-q4k717 , psef5-q4k873 , psef5-q4k906 , psef5-q4k982 , psef5-q4k989 , psef5-q4k993 , psef5-q4kax4 , psef5-q4kay8 , psef5-q4kaz0 , psef5-q4kaz4 , psef5-q4kb21 , psef5-q4kbd7 , psef5-q4kbs3 , psef5-q4kbs6 , psef5-q4kc18 , psef5-q4kc21 , psef5-q4kcd3 , psef5-q4kch8 , psef5-q4kcj3 , psef5-q4kck4 , psef5-q4kcn8 , psef5-q4kcq2 , psef5-q4kcx3 , psef5-q4kd54 , psef5-q4kda1 , psef5-q4kdb4 , psef5-q4ke18 , psef5-q4keh1 , psef5-q4kej0 , psef5-q4keq4 , psef5-q4kes9 , psef5-q4kf14 , psef5-q4kfj4 , psef5-q4kfw0 , psef5-q4kfw1 , psef5-q4kfx7 , psef5-q4kgg3 , psef5-q4kgj9 , psef5-q4kgs6 , psef5-q4kh30 , psef5-q4kha2 , psef5-q4khf1 , psef5-q4khl0 , psef5-q4khv5 , psef5-q4ki42 , psef5-q4kj24 , psef5-q4kj95 , psef5-q4kjk5 , psef5-q4kjk7 , psef5-q4kjm8 , psef5-q4kjt7 , psef5-q4kk20 , psef5-q4kk22 , psef5-q4kk59 , psef5-q4kkf7 , psefl-PLTG , psepf-PHAZ , psef5-q4kfd8

Title : Cloning and molecular analysis of poly(3-hydroxyalkanoate) biosynthesis genes in Pseudomonas aureofaciens - Nishikawa_2002_Curr.Microbiol_44_132
Author(s) : Nishikawa T , Ogawa K , Kohda R , Zhixiong W , Miyasaka H , Umeda F , Maeda I , Kawase M , Yagi K
Ref : Curr Microbiol , 44 :132 , 2002
Abstract :
PubMedSearch : Nishikawa_2002_Curr.Microbiol_44_132
PubMedID: 11815858
Gene_locus related to this paper: psech-PHAC1 , psech-PHAC2 , psepf-PHAZ

Title : Homology study of two polyhydroxyalkanoate (PHA) synthases from Pseudomonas aureofaciens - Umeda_2001_DNA.Seq_12_281
Author(s) : Umeda F , Nishikawa T , Miyasaka H , Maeda I , Kawase M , Yagi K
Ref : DNA Sequence , 12 :281 , 2001
Abstract :
PubMedSearch : Umeda_2001_DNA.Seq_12_281
PubMedID: 11916262
Gene_locus related to this paper: psech-PHAC1 , psech-PHAC2 , psepf-PHAZ

Title : PCR cloning of type II polyhydroxyalkanoate biosynthesis genes from two Pseudomonas strains - Zhang_2001_FEMS.Microbiol.Lett_198_165
Author(s) : Zhang G , Hang X , Green P , Ho KP , Chen GQ
Ref : FEMS Microbiology Letters , 198 :165 , 2001
Abstract :
PubMedSearch : Zhang_2001_FEMS.Microbiol.Lett_198_165
PubMedID: 11430409
Gene_locus related to this paper: pseme-PHAC1 , pseme-PHAC2 , pseme-PHAZ , psepf-PHAZ

Title : Cloning and molecular analysis of the Poly(3-hydroxybutyrate) and Poly(3-hydroxybutyrate-co-3-hydroxyalkanoate) biosynthesis genes in Pseudomonas sp. strain 61-3 - Matsusaki_1998_J.Bacteriol_180_6459
Author(s) : Matsusaki H , Manji S , Taguchi K , Kato M , Fukui T , Doi Y
Ref : Journal of Bacteriology , 180 :6459 , 1998
Abstract :
PubMedSearch : Matsusaki_1998_J.Bacteriol_180_6459
PubMedID: 9851987
Gene_locus related to this paper: psepf-PHAZ , psesp-PHAC1 , psesp-PHAC2 , psesp-PHBC