Gene_locus Report for: cragi-k1qs61 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Neuroligin-4, X-linked
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Protostomia: N E > Lophotrochozoa: N E > Mollusca: N E > Bivalvia: N E > Pteriomorphia: N E > Ostreoida: N E > Ostreoidea: N E > Ostreidae: N E > Crassostrea: N E > Crassostrea gigas: N E ABHD11-Acetyl_transferase :
cragi-k1puh6 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Abhydrolase domain-containing protein 11 .
ABHD12-PHARC :
cragi-k1qq58 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Monoacylglycerol lipase ABHD12 .
ABHD13-BEM46 :
cragi-k1rbs1 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Abhydrolase domain-containing protein 13 .
abh_upf0017 :
cragi-k1raz4 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Abhydrolase domain-containing protein 15 ,
cragi-k1qqj4 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Abhydrolase domain-containing protein 15 .
ACHE :
cragi-k1pwa8 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Cholinesterase ,
cragi-k1qly1 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Acetylcholinesterase .
Arylacetamide_deacetylase :
cragi-k1qdc0 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Arylacetamide deacetylase ,
cragi-k1r754 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Arylacetamide deacetylase-like 1 .
Carb_B_Mollusca :
cragi-k1qzk7 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Liver carboxylesterase 4 ,
cragi-k1pa46 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Neuroligin-4, X-linked ,
cragi-k1pga2 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Neuroligin-4, X-linked ,
cragi-k1pp63 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) esterase ,
cragi-k1q0b1.1 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) esterase ,
cragi-k1q0b1.2 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) esterase ,
cragi-k1q1h2 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Carboxylesterase 8 ,
cragi-k1q2z6 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Fatty acyl-CoA hydrolase, medium chain ,
cragi-k1qhl5 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Carboxylesterase 7 ,
cragi-k1qqb1.1 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Carboxylesterase 3 ,
cragi-k1qqb1.2 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Carboxylesterase 3 ,
cragi-k1qwl6 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Liver carboxylesterase 22 ,
cragi-k1r0n3.1 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Carboxylesterase 2(1) two genes concatened ,
cragi-k1r0n3.2 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Carboxylesterase 2(1) two genes concatened ,
cragi-k1r0r4 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) esterase ,
cragi-k1rgi1 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Fatty acyl-CoA hydrolase, medium chain ,
cragi-k1s0a7.1 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) from carboxylesterase contig ,
cragi-k1s0a7.2 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) from carboxylesterase contig ,
cragi-k1s0a7.3 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) from carboxylesterase contig .
Chlorophyllase_Plant :
cragi-k1qvm5 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Chlorophyllase-2 .
Cholinesterase-like :
cragi-k1rad0 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Crystal protein ,
cragi-k1p6v9 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) cAMP-regulated D2 protein ,
cragi-k1r068 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) cAMP-regulated D2 protein .
Gliotactin :
cragi-k1qaj8 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Neuroligin-4, Y-linked .
Maspardin-ACP33-SPG21_like :
cragi-k1rru1 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Maspardin .
Neuroligin :
cragi-k1qaw5 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Neuroligin-4, X-linked ,
cragi-k1qs99 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Neuroligin-4, X-linked ,
cragi-k1r1i9 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Neuroligin-4, Y-linked ,
cragi-k1r8q9 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Neuroligin-3 ,
cragi-k1rig4 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Neuroligin-4, Y-linked .
NLS3-Tex30 :
cragi-k1q6q0 Crassostrea gigas (Pacific oyster) (Crassostrea angulata) Uncharacterized protein .
Pancreatic_lipase :
cragi-k1pje5 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Pancreatic triacylglycerol lipase ,
cragi-k1qca6 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Pancreatic lipase-related protein 1 ,
cragi-k1qdt5 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Pancreatic lipase-related protein 1 ,
cragi-k1qkz7 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Pancreatic triacylglycerol lipase ,
cragi-k1rgd2 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Pancreatic lipase-related protein 1 .
Pectinacetylesterase-Notum :
cragi-k1qfi4 Crassostrea gigas (Pacific oyster) (Crassostrea angulata). Notum-like protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: cragi-k1qs61 Colored MSA for Neuroligin (raw)
MSVQSFLLIVAILSGSVLTISSEIRHLGNSVVHLKSGDIRGLWVTFKDSR
WTPVELYRGLSYGSLGKQDQATTESNFYSQWNKTLIVDQWAKVCPQEDIG
GVKSLKDLLKVLPRVHVIRLYHRSNYTKNQVEDCLTLNVFLPAREWTDTT
PFAVMVFVHGESYEIGTGNAYDGSVLASYGDVIVITINYRLGVLGFLNTG
HSSAQGNQALMDILAVLQWVQDNIAAFNGDPNKVTLFGHGHGAALVNILM
FSSLTEKGKYFQRAVIQSGSALSRWAVSYDAYSCAQWLARNVNCSSFTND
IEGLTKCLKSRSAQDLVNSSPGAPKYYSCMAPSPNPYGEIFRAPVENLMS
ESRNTFTSIPVIFGVTSNEAYMYLKQKELTDGISEDRKSKIIRTFVLNNF
QYNRQKIYEILYHQYTSWDTIQDDFTRRDNVLQLLSDGLYVAPLVKMTQQ
HSLSTDTYLYAFTHATVSDTALYHNWTSAVHGDELAYIFGAPLVEGVTPF
SEKFTPLEKTISETMMRYWTNFAKTGDPNKPEGELAFEQKLRSDPGWPKY
DRNQQRFLHFGSNTTSSSHYRGKELSLWLDLIPKLNQPGKPNPDPREHEL
KDQNNMATFDDPHRLITDFKKFFPPHPPIPPSPPPLDNGMYFPPGDSEYT
NKEKTKREDSLEQFKPQSEEKAEQESSLSNSVPLSITVAIGCSLLFINIL
LFSAVYYQRRRIQRLNREAIEQEHNDQNDFPDIGHKSQRENTAIKEPPDR
DLHLDPHSKPNIQSNPLYTVISKSPCDLAQESSHESLSTLSCASSGVHQK
NAVNHKGVAPPTIPRDAPVIQRDHIPNSKYAANSSSNLSKEKMNNVRNST
PTHDTITVV
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M S V Q S F L L I V A I L S G S V L T I S S E I R H L G N S V V H L K S G D I R G L W V T F K D S R W T P V E L Y R G L S Y G S L G K Q D Q A T T E S N F Y S Q W N K T L I V D Q W A K V C P Q E D I G G V K S L K D L L K V L P R V H V I R L Y H R S N Y T K N Q V E D C L T L N V F L P A R E W T D T T P F A V M V F V H G E S Y E I G T G N A Y D G S V L A S Y G D V I V I T I N Y R L G V L G F L N T G H S S A Q G N Q A L M D I L A V L Q W V Q D N I A A F N G D P N K V T L F G H G H G A A L V N I L M F S S L T E K G K Y F Q R A V I Q S G S A L S R W A V S Y D A Y S C A Q W L A R N V N C S S F T N D I E G L T K C L K S R S A Q D L V N S S P G A P K Y Y S C M A P S P N P Y G E I F R A P V E N L M S E S R N T F T S I P V I F G V T S N E A Y M Y L K Q K E L T D G I S E D R K S K I I R T F V L N N F Q Y N R Q K I Y E I L Y H Q Y T S W D T I Q D D F T R R D N V L Q L L S D G L Y V A P L V K M T Q Q H S L S T D T Y L Y A F T H A T V S D T A L Y H N W T S A V H G D E L A Y I F G A P L V E G V T P F S E K F T P L E K T I S E T M M R Y W T N F A K T G D P N K P E G E L A F E Q K L R S D P G W P K Y D R N Q Q R F L H F G S N T T S S S H Y R G K E L S L W L D L I P K L N Q P G K P N P D P R E H E L K D Q N N M A T F D D P H R L I T D F K K F F P P H P P I P P S P P P L D N G M Y F P P G D S E Y T N K E K T K R E D S L E Q F K P Q S E E K A E Q E S S L S N S V P L S I T V A I G C S L L F I N I L L F S A V Y Y Q R R R I Q R L N R E A I E Q E H N D Q N D F P D I G H K S Q R E N T A I K E P P D R D L H L D P H S K P N I Q S N P L Y T V I S K S P C D L A Q E S S H E S L S T L S C A S S G V H Q K N A V N H K G V A P P T I P R D A P V I Q R D H I P N S K Y A A N S S S N L S K E K M N N V R N S T P T H D T I T V V
Reference
Title: The oyster genome reveals stress adaptation and complexity of shell formationZhang G , Fang X , Guo X , Li L , Luo R , Xu F , Yang P , Zhang L , Wang X and Yin Y <66 more author(s)> Zhang G , Fang X , Guo X , Li L , Luo R , Xu F , Yang P , Zhang L , Wang X , Qi H , Xiong Z , Que H , Xie Y , Holland PW , Paps J , Zhu Y , Wu F , Chen Y , Wang J , Peng C , Meng J , Yang L , Liu J , Wen B , Zhang N , Huang Z , Zhu Q , Feng Y , Mount A , Hedgecock D , Xu Z , Liu Y , Domazet-Loso T , Du Y , Sun X , Zhang S , Liu B , Cheng P , Jiang X , Li J , Fan D , Wang W , Fu W , Wang T , Wang B , Zhang J , Peng Z , Li Y , Li N , Chen M , He Y , Tan F , Song X , Zheng Q , Huang R , Yang H , Du X , Chen L , Yang M , Gaffney PM , Wang S , Luo L , She Z , Ming Y , Huang W , Huang B , Zhang Y , Qu T , Ni P , Miao G , Wang Q , Steinberg CE , Wang H , Qian L , Liu X , Yin Y (- 66) Ref: Nature, 490 :49, 2012 : PubMed Abstract ESTHER: Zhang_2012_Nature_490_49 PubMedSearch: Zhang 2012 Nature 490 49 PubMedID: 22992520 Gene_locus related to this paper: cragi-k1qzk7 ,
cragi-k1rad0 ,
cragi-k1p6v9 ,
cragi-k1pa46 ,
cragi-k1pga2 ,
cragi-k1pp63 ,
cragi-k1pwa8 ,
cragi-k1q0b1.1 ,
cragi-k1q0b1.2 ,
cragi-k1q1h2 ,
cragi-k1q2z6 ,
cragi-k1qaj8 ,
cragi-k1qaw5 ,
cragi-k1qhl5 ,
cragi-k1qly1 ,
cragi-k1qqb1.1 ,
cragi-k1qqb1.2 ,
cragi-k1qs61 ,
cragi-k1qs99 ,
cragi-k1qwl6 ,
cragi-k1r068 ,
cragi-k1r0n3.1 ,
cragi-k1r0n3.2 ,
cragi-k1r0r4 ,
cragi-k1r1i9 ,
cragi-k1r8q9 ,
cragi-k1rgi1 ,
cragi-k1rig4 ,
cragi-k1s0a7.1 ,
cragi-k1s0a7.2 ,
cragi-k1s0a7.3 ,
cragi-k1q6q0 ,
cragi-k1rru1 ,
cragi-k1qfi4 ,
cragi-k1qvm5 ,
cragi-k1qq58 ,
cragi-k1qdc0 ,
cragi-k1r754 ,
cragi-k1pje5 ,
cragi-k1qca6 ,
cragi-k1qdt5 ,
cragi-k1qkz7 ,
cragi-k1rgd2 ,
cragi-k1puh6 ,
cragi-k1raz4 ,
cragi-k1qqj4 ,
cragi-k1rbs1 Abstract
The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress response and the proteome of the shell. The oyster genome is highly polymorphic and rich in repetitive sequences, with some transposable elements still actively shaping variation. Transcriptome studies reveal an extensive set of genes responding to environmental stress. The expansion of genes coding for heat shock protein 70 and inhibitors of apoptosis is probably central to the oyster's adaptation to sessile life in the highly stressful intertidal zone. Our analyses also show that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes. The oyster genome sequence fills a void in our understanding of the Lophotrochozoa.
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