Gene_Locus Report

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Gene_locus Report for: fugru-4neur

Fugu rubripes (Japanese pufferfish) (Takifugu rubripes) neuroligin 4

Comment
SINFRUP00000001049 SINFRUG00000001049 SINFRUT00000081112 SINFRUT00000081113 SINFRUG00000079023 SINFRUG00000001050 SINFRUP00000001050


Relationship
Family|Neuroligin
Block| C
Position in NCBI Life Tree|Fugu rubripes
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Euteleosteomorpha: N E > Neoteleostei: N E > Eurypterygia: N E > Ctenosquamata: N E > Acanthomorphata: N E > Euacanthomorphacea: N E > Percomorphaceae: N E > Eupercaria: N E > Tetraodontiformes: N E > Tetraodontoidei: N E > Tetradontoidea: N E > Tetraodontidae: N E > Takifugu: N E > Takifugu rubripes: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 UniProt : H2U9A4
1 UniProt : H2U9A4
1 Interpro : H2U9A4
1 Prodom : H2U9A4
1 Pfam : H2U9A4
1 PIRSF : H2U9A4
1 SUPERFAM : H2U9A4
Sequence
Graphical view for this peptide sequence: fugru-4neur
Colored MSA for Neuroligin (raw)
SSAQQTVPVISTAQGRIRGILTPLPSDLLGPIIQYLGVPYARPPTGDRRF
QPPEPPLPWPGIRNVTQFAPVCPQSLDERSILGDMMPSWLTANLDIAATY
LTHQGEDCLYLNIYVPTEEDIREEGGQRPVMVFVHGGSYTEGTGNMMDGS
VLASYGKVIVITLNYRLGVLGFLSTGDQSAKGNYGLLDQIQALRWVKENI
AAFGGDPNRVTVFGSGAGASCVSLLTLSHYSEDLFHRAIIQSGSALASWA
VNYQPSKYARQLGERVGCGIDDSSQLVACLKGRSYRELVEQNITPAKYHT
AFAPVIDGDVIPDDPQILMEQGEFLNYDVMLGVNQGEGVKFVEGIIDSED
GVTAEDFDFAVSDFVDSLYGYPEGRDTLRESIRFMYTDWADRDNAETRRK
TLVALFTDHQWVAPAIATADLHAQYGSPTYFYSFYHQRVTATPPWADSAH
GDEVPYVFGVPMVGPTDLFNCNFSKNDVMLSAVVMTYWTNFAKTGDPNQP
VPQDTKFIHTKPNRFEDVAWSKYTPKEQLYLHIGLKPRVRDHYRATKISF
WLQLVPHLHHVNELLQSVSSFTHSPSPQDDTPYSYTKRLAKGWPPSTRHP
GSQGGTPQPPESALGQGGGESGTRVPNEDYSTELSVTIAVGASLLFLNIL
AFAALLYKKDKRRLEHRRSRPLPPPQARHHCCRCCCPPAGRGTDVITGLT
PVSHHFLDIYSTLDTVRLTCPPDYTLTLRRSPDDVPLMTSLTPGSLP
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

SSAQQTVPVISTAQGRIRGILTPLPSDLLGPIIQYLGVPYARPPTGDRRF
QPPEPPLPWPGIRNVTQFAPVCPQSLDERSILGDMMPSWLTANLDIAATY
LTHQGEDCLYLNIYVPTEEDIREEGGQRPVMVFVHGGSYTEGTGNMMDGS
VLASYGKVIVITLNYRLGVLGFLSTGDQSAKGNYGLLDQIQALRWVKENI
AAFGGDPNRVTVFGSGAGASCVSLLTLSHYSEDLFHRAIIQSGSALASWA
VNYQPSKYARQLGERVGCGIDDSSQLVACLKGRSYRELVEQNITPAKYHT
AFAPVIDGDVIPDDPQILMEQGEFLNYDVMLGVNQGEGVKFVEGIIDSED
GVTAEDFDFAVSDFVDSLYGYPEGRDTLRESIRFMYTDWADRDNAETRRK
TLVALFTDHQWVAPAIATADLHAQYGSPTYFYSFYHQRVTATPPWADSAH
GDEVPYVFGVPMVGPTDLFNCNFSKNDVMLSAVVMTYWTNFAKTGDPNQP
VPQDTKFIHTKPNRFEDVAWSKYTPKEQLYLHIGLKPRVRDHYRATKISF
WLQLVPHLHHVNELLQSVSSFTHSPSPQDDTPYSYTKRLAKGWPPSTRHP
GSQGGTPQPPESALGQGGGESGTRVPNEDYSTELSVTIAVGASLLFLNIL
AFAALLYKKDKRRLEHRRSRPLPPPQARHHCCRCCCPPAGRGTDVITGLT
PVSHHFLDIYSTLDTVRLTCPPDYTLTLRRSPDDVPLMTSLTPGSLP


References
    Title: The medaka draft genome and insights into vertebrate genome evolution
    Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K and Kohara Y <28 more author(s)>
    Ref: Nature, 447:714, 2007 : PubMed

            

    Title: Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
    Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S and Brenner S <31 more author(s)>
    Ref: Science, 297:1301, 2002 : PubMed

            


Other Papers


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Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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