Gene_Locus Report

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Gene_locus Report for: oikdi-e4x2c7.2

Oikopleura dioica (Tunicate) Whole genome shotgun assembly, e4x2c7 reference scaffold_8 e4y607 allelic scaffoldA_16 allelic scaffoldA_1156

Comment
This long sequence is formed of two cholinesterase like sequences Pfam A COesterase 2 552 Pfam A COesterase 662 922


Relationship
Family|Carb_B_Chordata
Block| C
Position in NCBI Life Tree|Oikopleura dioica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Tunicata: N E > Appendicularia: N E > Oikopleuridae: N E > Oikopleura: N E > Oikopleura dioica: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : FN653022, FN654290, FN655430
3 UniProt : E4X2C7, E4Y607, E4YUH9
3 UniProt : E4X2C7, E4Y607, E4YUH9
3 Interpro : E4X2C7, E4Y607, E4YUH9
3 Pfam : E4X2C7, E4Y607, E4YUH9
3 PIRSF : E4X2C7, E4Y607, E4YUH9
3 SUPERFAM : E4X2C7, E4Y607, E4YUH9
Sequence
Graphical view for this peptide sequence: oikdi-e4x2c7.2
Colored MSA for Carb_B_Chordata (raw)
FKGIPYAADFTERWTASVAREAGGYEVAEHDFTVYGPMCMSKNAKSSQDN
YDDFAEQCLNVNVMTKPEWLTDGTKHPILIYIHGGGFNSGSNRSKFTNLV
NDQNVMVVSVNYRLGPYGFFYDTKTPNVEGPRANFGLLDQREAMKWVQNF
GAEFGGDINQITVSGCSAGSDATWWHLTEEKSWPYFNRAITNGVGLNAAY
GSHDIEIASGQAQYVIDNSECAGQPDADVIDCLRAIDDIDELNELFRDAT
DNVYHPIKLALEPGWGPVIDGDFKSESLMDSVMNGNVKPNCPISFNFARD
DAWGFTNGGFRFVHLNNFRRSRNFTIFLYSHFNFKSMHRTNLQREGFEIP
SDYTDIYFKEVYGPELFESTLKPQFGCSNNVDGSANECKEQFHNYVMGTT
WTCNSQWALAGAPITDPNIGPIYPMEFSWPTCVKNDDDVNTRTCHCSENG
YILGSKSIADWMSDDEKKMQQKMRDYFGRFMRDGTFPFDADFGEMKDVKS
LNGEHNHINGEGINHYRSYPDTCDTLFSLAAEIGPVNVFGNAYWYYEHGE
QSNNFCYCHDSQFRGELSWSREKRADRELDSLDQQAAQKCSRRKRV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

FKGIPYAADFTERWTASVAREAGGYEVAEHDFTVYGPMCMSKNAKSSQDN
YDDFAEQCLNVNVMTKPEWLTDGTKHPILIYIHGGGFNSGSNRSKFTNLV
NDQNVMVVSVNYRLGPYGFFYDTKTPNVEGPRANFGLLDQREAMKWVQNF
GAEFGGDINQITVSGCSAGSDATWWHLTEEKSWPYFNRAITNGVGLNAAY
GSHDIEIASGQAQYVIDNSECAGQPDADVIDCLRAIDDIDELNELFRDAT
DNVYHPIKLALEPGWGPVIDGDFKSESLMDSVMNGNVKPNCPISFNFARD
DAWGFTNGGFRFVHLNNFRRSRNFTIFLYSHFNFKSMHRTNLQREGFEIP
SDYTDIYFKEVYGPELFESTLKPQFGCSNNVDGSANECKEQFHNYVMGTT
WTCNSQWALAGAPITDPNIGPIYPMEFSWPTCVKNDDDVNTRTCHCSENG
YILGSKSIADWMSDDEKKMQQKMRDYFGRFMRDGTFPFDADFGEMKDVKS
LNGEHNHINGEGINHYRSYPDTCDTLFSLAAEIGPVNVFGNAYWYYEHGE
QSNNFCYCHDSQFRGELSWSREKRADRELDSLDQQAAQKCSRRKRV


Reference
    Title: Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
    Denoeud F, Henriet S, Mungpakdee S, Aury JM, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C and Chourrout D <46 more author(s)>
    Ref: Science, 330:1381, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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