Title : Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis - Bastard_2017_Nat.Chem.Biol_13_858 |
Author(s) : Bastard K , Perret A , Mariage A , Bessonnet T , Pinet-Turpault A , Petit JL , Darii E , Bazire P , Vergne-Vaxelaire C , Brewee C , Debard A , Pellouin V , Besnard-Gonnet M , Artiguenave F , Medigue C , Vallenet D , Danchin A , Zaparucha A , Weissenbach J , Salanoubat M , de Berardinis V |
Ref : Nat Chemical Biology , 13 :858 , 2017 |
Abstract : |
PubMedSearch : Bastard_2017_Nat.Chem.Biol_13_858 |
PubMedID: 28581482 |
Gene_locus related to this paper: neima-metx , strmk-metx , defds-metxa , desmr-metxa , halvd-metxa , metfp-metxa , sulao-metxa , hallt-metxa , metez-metxa , halaf-metxs , metms-metxa , fraad-sst , halaf-sst , naupa-metxa , metzd-metxa , cycms-metxa , comtk-metxs , metpe-metxa , metrm-metxa , halnc-metxs , breda-metxs |
Title : Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization - Louis_2012_G3.(Bethesda)_2_299 |
Author(s) : Louis VL , Despons L , Friedrich A , Martin T , Durrens P , Casaregola S , Neuveglise C , Fairhead C , Marck C , Cruz JA , Straub ML , Kugler V , Sacerdot C , Uzunov Z , Thierry A , Weiss S , Bleykasten C , De Montigny J , Jacques N , Jung P , Lemaire M , Mallet S , Morel G , Richard GF , Sarkar A , Savel G , Schacherer J , Seret ML , Talla E , Samson G , Jubin C , Poulain J , Vacherie B , Barbe V , Pelletier E , Sherman DJ , Westhof E , Weissenbach J , Baret PV , Wincker P , Gaillardin C , Dujon B , Souciet JL |
Ref : G3 (Bethesda) , 2 :299 , 2012 |
Abstract : |
PubMedSearch : Louis_2012_G3.(Bethesda)_2_299 |
PubMedID: 22384408 |
Gene_locus related to this paper: picso-g8ycc9 , picso-g8yet0 , picso-g8yb96 , picso-g8ym39 , erecy-g8jrp5 , picso-g8y652 |
Title : Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites - Barbe_2011_J.Bacteriol_193_5055 |
Author(s) : Barbe V , Bouzon M , Mangenot S , Badet B , Poulain J , Segurens B , Vallenet D , Marliere P , Weissenbach J |
Ref : Journal of Bacteriology , 193 :5055 , 2011 |
Abstract : |
PubMedSearch : Barbe_2011_J.Bacteriol_193_5055 |
PubMedID: 21868806 |
Gene_locus related to this paper: stren-f8jjf8 , stren-f8jk65 , stren-f8jly2 , stren-f8jm04 , stren-f8juv4 , stren-f8k466 , stren-f8jvj2 , stren-f8k4s8 |
Title : Nitrite-driven anaerobic methane oxidation by oxygenic bacteria - Ettwig_2010_Nature_464_543 |
Author(s) : Ettwig KF , Butler MK , Le Paslier D , Pelletier E , Mangenot S , Kuypers MM , Schreiber F , Dutilh BE , Zedelius J , de Beer D , Gloerich J , Wessels HJ , van Alen T , Luesken F , Wu ML , van de Pas-Schoonen KT , Op den Camp HJ , Janssen-Megens EM , Francoijs KJ , Stunnenberg H , Weissenbach J , Jetten MS , Strous M |
Ref : Nature , 464 :543 , 2010 |
Abstract : |
PubMedSearch : Ettwig_2010_Nature_464_543 |
PubMedID: 20336137 |
Gene_locus related to this paper: 9bact-d5mm47 |
Title : Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence - Fonknechten_2010_BMC.Genomics_11_555 |
Author(s) : Fonknechten N , Chaussonnerie S , Tricot S , Lajus A , Andreesen JR , Perchat N , Pelletier E , Gouyvenoux M , Barbe V , Salanoubat M , Le Paslier D , Weissenbach J , Cohen GN , Kreimeyer A |
Ref : BMC Genomics , 11 :555 , 2010 |
Abstract : |
PubMedSearch : Fonknechten_2010_BMC.Genomics_11_555 |
PubMedID: 20937090 |
Title : Structure, function, and evolution of the Thiomonas spp. genome - Arsene-Ploetze_2010_PLoS.Genet_6_e1000859 |
Author(s) : Arsene-Ploetze F , Koechler S , Marchal M , Coppee JY , Chandler M , Bonnefoy V , Brochier-Armanet C , Barakat M , Barbe V , Battaglia-Brunet F , Bruneel O , Bryan CG , Cleiss-Arnold J , Cruveiller S , Erhardt M , Heinrich-Salmeron A , Hommais F , Joulian C , Krin E , Lieutaud A , Lievremont D , Michel C , Muller D , Ortet P , Proux C , Siguier P , Roche D , Rouy Z , Salvignol G , Slyemi D , Talla E , Weiss S , Weissenbach J , Medigue C , Bertin PN |
Ref : PLoS Genet , 6 :e1000859 , 2010 |
Abstract : |
PubMedSearch : Arsene-Ploetze_2010_PLoS.Genet_6_e1000859 |
PubMedID: 20195515 |
Gene_locus related to this paper: thik1-d5x539 , thia3-d6cv72 , thia3-d6clv8 |
Title : Comparative analysis of Acinetobacters: three genomes for three lifestyles - Vallenet_2008_PLoS.One_3_e1805 |
Author(s) : Vallenet D , Nordmann P , Barbe V , Poirel L , Mangenot S , Bataille E , Dossat C , Gas S , Kreimeyer A , Lenoble P , Oztas S , Poulain J , Segurens B , Robert C , Abergel C , Claverie JM , Raoult D , Medigue C , Weissenbach J , Cruveiller S |
Ref : PLoS ONE , 3 :e1805 , 2008 |
Abstract : |
PubMedSearch : Vallenet_2008_PLoS.One_3_e1805 |
PubMedID: 18350144 |
Gene_locus related to this paper: acib1-e8pgf8 , acib3-b7guy6 , acib3-b7h156 , acib3-metx , aciba-d0c992 , aciba-k1epl1 , aciba-k6lkl9 , acibc-b2huf4 , acibc-b2i0a2 , acibc-b2i0w9 , acibc-b2i2b0 , acibs-b0vt32 , acibt-a3m1g6 , acibt-a3m5r6 , acibt-a3m5t3 , acibt-a3m5x2 , acibt-a3m627 , acibt-a3m707 , aciby-b0v723 , acica-d0s0a7 , aciju-d0sj67 , aciba-f5iht4 , aciba-a0a009wzt4 |
Title : A tale of two oxidation states: bacterial colonization of arsenic-rich environments - Muller_2007_PLoS.Genet_3_e53 |
Author(s) : Muller D , Medigue C , Koechler S , Barbe V , Barakat M , Talla E , Bonnefoy V , Krin E , Arsene-Ploetze F , Carapito C , Chandler M , Cournoyer B , Cruveiller S , Dossat C , Duval S , Heymann M , Leize E , Lieutaud A , Lievremont D , Makita Y , Mangenot S , Nitschke W , Ortet P , Perdrial N , Schoepp B , Siguier P , Simeonova DD , Rouy Z , Segurens B , Turlin E , Vallenet D , Van Dorsselaer A , Weiss S , Weissenbach J , Lett MC , Danchin A , Bertin PN |
Ref : PLoS Genet , 3 :e53 , 2007 |
Abstract : |
PubMedSearch : Muller_2007_PLoS.Genet_3_e53 |
PubMedID: 17432936 |
Gene_locus related to this paper: herar-a4g4w8 , herar-a4g5p0 , herar-a4g6p3 , herar-a4g378 , herar-a4g411 , herar-a4g622 , herar-a4g818 , herar-a4g899 , herar-a4gac3 , herar-metx , herar-a4g8n7 |
Title : Deciphering the evolution and metabolism of an anammox bacterium from a community genome - Strous_2006_Nature_440_790 |
Author(s) : Strous M , Pelletier E , Mangenot S , Rattei T , Lehner A , Taylor MW , Horn M , Daims H , Bartol-Mavel D , Wincker P , Barbe V , Fonknechten N , Vallenet D , Segurens B , Schenowitz-Truong C , Medigue C , Collingro A , Snel B , Dutilh BE , Op den Camp HJ , van der Drift C , Cirpus I , van de Pas-Schoonen KT , Harhangi HR , van Niftrik L , Schmid M , Keltjens J , van de Vossenberg J , Kartal B , Meier H , Frishman D , Huynen MA , Mewes HW , Weissenbach J , Jetten MS , Wagner M , Le Paslier D |
Ref : Nature , 440 :790 , 2006 |
Abstract : |
PubMedSearch : Strous_2006_Nature_440_790 |
PubMedID: 16598256 |
Gene_locus related to this paper: 9bact-q1py93 , 9bact-q1q3k9 , 9bact-q1q414 |
Title : The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution - van de Guchte_2006_Proc.Natl.Acad.Sci.U.S.A_103_9274 |
Author(s) : van de Guchte M , Penaud S , Grimaldi C , Barbe V , Bryson K , Nicolas P , Robert C , Oztas S , Mangenot S , Couloux A , Loux V , Dervyn R , Bossy R , Bolotin A , Batto JM , Walunas T , Gibrat JF , Bessieres P , Weissenbach J , Ehrlich SD , Maguin E |
Ref : Proc Natl Acad Sci U S A , 103 :9274 , 2006 |
Abstract : |
PubMedSearch : van de Guchte_2006_Proc.Natl.Acad.Sci.U.S.A_103_9274 |
PubMedID: 16754859 |
Gene_locus related to this paper: lacda-q1g8l1 , lacdb-q04ci8 , lacdb-q04cw3 , lacdl-pepx , lacdl-pip |
Title : Remodelling of the homeobox gene complement in the tunicate Oikopleura dioica - Edvardsen_2005_Curr.Biol_15_R12 |
Author(s) : Edvardsen RB , Seo HC , Jensen MF , Mialon A , Mikhaleva J , Bjordal M , Cartry J , Reinhardt R , Weissenbach J , Wincker P , Chourrout D |
Ref : Current Biology , 15 :R12 , 2005 |
Abstract : |
PubMedSearch : Edvardsen_2005_Curr.Biol_15_R12 |
PubMedID: 15649342 |
Gene_locus related to this paper: 9uroc-q676a9 , oikdi-cholike.1 , oikdi-cholike.2 |
Title : Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation - Eiglmeier_2005_Insect.Biochem.Mol.Biol_35_799 |
Author(s) : Eiglmeier K , Wincker P , Cattolico L , Anthouard V , Holm I , Eckenberg R , Quesneville H , Jaillon O , Collins FH , Weissenbach J , Brey PT , Roth CW |
Ref : Insect Biochemistry & Molecular Biology , 35 :799 , 2005 |
Abstract : |
PubMedSearch : Eiglmeier_2005_Insect.Biochem.Mol.Biol_35_799 |
PubMedID: 15944077 |
Gene_locus related to this paper: anoga-agCG50851 , anoga-ebiG8504 |
Title : Whole genome sequence comparisons and full-length cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation - Castelli_2004_Genome.Res_14_406 |
Author(s) : Castelli V , Aury JM , Jaillon O , Wincker P , Clepet C , Menard M , Cruaud C , Quetier F , Scarpelli C , Schachter V , Temple G , Caboche M , Weissenbach J , Salanoubat M |
Ref : Genome Res , 14 :406 , 2004 |
Abstract : |
PubMedSearch : Castelli_2004_Genome.Res_14_406 |
PubMedID: 14993207 |
Gene_locus related to this paper: arath-SCP28 |
Title : Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica - Seo_2004_Nature_431_67 |
Author(s) : Seo HC , Edvardsen RB , Maeland AD , Bjordal M , Jensen MF , Hansen A , Flaat M , Weissenbach J , Lehrach H , Wincker P , Reinhardt R , Chourrout D |
Ref : Nature , 431 :67 , 2004 |
Abstract : |
PubMedSearch : Seo_2004_Nature_431_67 |
PubMedID: 15343333 |
Gene_locus related to this paper: 9uroc-q676a9 , oikdi-cholike.1 , oikdi-cholike.2 |
Title : Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome - Dufresne_2003_Proc.Natl.Acad.Sci.U.S.A_100_10020 |
Author(s) : Dufresne A , Salanoubat M , Partensky F , Artiguenave F , Axmann IM , Barbe V , Duprat S , Galperin MY , Koonin EV , Le Gall F , Makarova KS , Ostrowski M , Oztas S , Robert C , Rogozin IB , Scanlan DJ , Tandeau de Marsac N , Weissenbach J , Wincker P , Wolf YI , Hess WR |
Ref : Proc Natl Acad Sci U S A , 100 :10020 , 2003 |
Abstract : |
PubMedSearch : Dufresne_2003_Proc.Natl.Acad.Sci.U.S.A_100_10020 |
PubMedID: 12917486 |
Gene_locus related to this paper: proma-MHPC2 , proma-PRO1109 , proma-q7v9n9 , proma-q7vb48 , proma-q7vb60 , proma-q7vbe1 , proma-q7vbl5 , proma-q7vcg4 , proma-q7vdr9 , proma-q7ved1 |
Title : An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi - Cohen_2003_Mol.Microbiol_47_1495 |
Author(s) : Cohen GN , Barbe V , Flament D , Galperin M , Heilig R , Lecompte O , Poch O , Prieur D , Querellou J , Ripp R , Thierry JC , Van der Oost J , Weissenbach J , Zivanovic Y , Forterre P |
Ref : Molecular Microbiology , 47 :1495 , 2003 |
Abstract : |
PubMedSearch : Cohen_2003_Mol.Microbiol_47_1495 |
PubMedID: 12622808 |
Gene_locus related to this paper: pyrab-PAB0762 , pyrab-PAB1050 , pyrab-PAB1300 , pyrab-PAB2176 , pyrab-PYRAB14490 |
Title : Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi - Katinka_2001_Nature_414_450 |
Author(s) : Katinka MD , Duprat S , Cornillot E , Metenier G , Thomarat F , Prensier G , Barbe V , Peyretaillade E , Brottier P , Wincker P , Delbac F , El Alaoui H , Peyret P , Saurin W , Gouy M , Weissenbach J , Vivares CP |
Ref : Nature , 414 :450 , 2001 |
Abstract : |
PubMedSearch : Katinka_2001_Nature_414_450 |
PubMedID: 11719806 |
Gene_locus related to this paper: enccu-ECU07.0900 , enccu-ECU09.0730 , enccu-q8sut7 , enccu-Q8SVX3 |
Title : The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403 - Bolotin_2001_Genome.Res_11_731 |
Author(s) : Bolotin A , Wincker P , Mauger S , Jaillon O , Malarme K , Weissenbach J , Ehrlich SD , Sorokin A |
Ref : Genome Res , 11 :731 , 2001 |
Abstract : |
PubMedSearch : Bolotin_2001_Genome.Res_11_731 |
PubMedID: 11337471 |
Gene_locus related to this paper: lacla-cpo , lacla-ESTA , lacla-menX , lacla-pepx , lacla-YAHD , lacla-YBCH , lacla-YEEB , lacla-YMGC , lacla-YNDB , lacla-YNEB , lacla-YQAG , lacla-YQBF , lacla-YRIC , lacla-YUFC |
Title : Mutations in CGI-58, the gene encoding a new protein of the esterase\/lipase\/thioesterase subfamily, in Chanarin-Dorfman syndrome - Lefevre_2001_Am.J.Hum.Genet_69_1002 |
Author(s) : Lefevre C , Jobard F , Caux F , Bouadjar B , Karaduman A , Heilig R , Lakhdar H , Wollenberg A , Verret JL , Weissenbach J , Ozguc M , Lathrop M , Prud'homme JF , Fischer J |
Ref : American Journal of Human Genetics , 69 :1002 , 2001 |
Abstract : |
PubMedSearch : Lefevre_2001_Am.J.Hum.Genet_69_1002 |
PubMedID: 11590543 |
Gene_locus related to this paper: human-ABHD5 |
Title : Mechanisms of evolution in Rickettsia conorii and R. prowazekii - Ogata_2001_Science_293_2093 |
Author(s) : Ogata H , Audic S , Renesto-Audiffren P , Fournier PE , Barbe V , Samson D , Roux V , Cossart P , Weissenbach J , Claverie JM , Raoult D |
Ref : Science , 293 :2093 , 2001 |
Abstract : |
PubMedSearch : Ogata_2001_Science_293_2093 |
PubMedID: 11557893 |
Gene_locus related to this paper: ricco-PTRB , ricco-RC0464 , ricco-RC0603 , ricco-RC0617 , ricco-RC0713 , ricco-RC1147 , ricco-RC1296 , ricpr-RP681 , ricco-RC1136 |