Gene_Locus Report

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Gene_locus Report for: vitvi-a7pus9

Vitis vinifera (Grape) Chromosome chr4 scaffold_32, whole genome shotgun sequence

Relationship
Family|Duf_829
Block| X
Position in NCBI Life Tree|Vitis vinifera
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > rosids incertae sedis: N E > Vitales: N E > Vitaceae: N E > Vitis: N E > Vitis vinifera: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : CU459249, XP_010649126, RVX16686
1 UniProt : A0A438K668
1 Interpro : A0A438K668
1 Pfam : A0A438K668
1 PIRSF : A0A438K668
1 SUPERFAM : A0A438K668
Sequence
Graphical view for this peptide sequence: vitvi-a7pus9
Colored MSA for Duf_829 (raw)
MEASFRIFNSSALNRRHLSASLLNKSTSLKFPPTLHRPSLCRRVSPSSPL
FVAFPNVVSINPKCFARIRASSSIGPFPPCPSPNSNPFGFLLSLSHSHSS
PPLEFDSNEKVLEWNRAPEGGVNGGSVRDRGPAVTVVLLGWLGAKPKHLR
RYVDLYTSRGIHAVTFVVPVREVLWIDLGRRVEKRIAEMTQELVSWLSET
ENDGRERHLLFHTFSNTGWFAYGAILDHLQGRPDLMEKIKGCVVDSGGDP
EINPQVWAAGFSAALLKKNSSSAYSLVEVTERNESKSKVDSSKVQEKEPL
IIETMLLSVLEFFFSVILRLPDVNRRLTKIISILSKNQPPCSQLYLYSTA
DKVIPYHSVEMFINEQMRMGKKVRSFNFGLSPHVDHYRTFPNLYSSEIHN
FLKECLAEVKKM
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MEASFRIFNSSALNRRHLSASLLNKSTSLKFPPTLHRPSLCRRVSPSSPL
FVAFPNVVSINPKCFARIRASSSIGPFPPCPSPNSNPFGFLLSLSHSHSS
PPLEFDSNEKVLEWNRAPEGGVNGGSVRDRGPAVTVVLLGWLGAKPKHLR
RYVDLYTSRGIHAVTFVVPVREVLWIDLGRRVEKRIAEMTQELVSWLSET
ENDGRERHLLFHTFSNTGWFAYGAILDHLQGRPDLMEKIKGCVVDSGGDP
EINPQVWAAGFSAALLKKNSSSAYSLVEVTERNESKSKVDSSKVQEKEPL
IIETMLLSVLEFFFSVILRLPDVNRRLTKIISILSKNQPPCSQLYLYSTA
DKVIPYHSVEMFINEQMRMGKKVRSFNFGLSPHVDHYRTFPNLYSSEIHN
FLKECLAEVKKM


Reference
    Title: The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N and Wincker P <46 more author(s)>
    Ref: Nature, 449:463, 2007 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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