Kubicek_2011_Genome.Biol_12_R40

Reference

Title : Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma - Kubicek_2011_Genome.Biol_12_R40
Author(s) : Kubicek CP , Herrera-Estrella A , Seidl-Seiboth V , Martinez DA , Druzhinina IS , Thon M , Zeilinger S , Casas-Flores S , Horwitz BA , Mukherjee PK , Mukherjee M , Kredics L , Alcaraz LD , Aerts A , Antal Z , Atanasova L , Cervantes-Badillo MG , Challacombe J , Chertkov O , McCluskey K , Coulpier F , Deshpande N , von Dohren H , Ebbole DJ , Esquivel-Naranjo EU , Fekete E , Flipphi M , Glaser F , Gomez-Rodriguez EY , Gruber S , Han C , Henrissat B , Hermosa R , Hernandez-Onate M , Karaffa L , Kosti I , Le Crom S , Lindquist E , Lucas S , Lubeck M , Lubeck PS , Margeot A , Metz B , Misra M , Nevalainen H , Omann M , Packer N , Perrone G , Uresti-Rivera EE , Salamov A , Schmoll M , Seiboth B , Shapiro H , Sukno S , Tamayo-Ramos JA , Tisch D , Wiest A , Wilkinson HH , Zhang M , Coutinho PM , Kenerley CM , Monte E , Baker SE , Grigoriev IV
Ref : Genome Biol , 12 :R40 , 2011
Abstract :

BACKGROUND: Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus, has special relevance when the prey is a plant pathogen, providing a strategy for biological control of pests for plant protection. Probably, the most studied biocontrol agents are species of the genus Hypocrea/Trichoderma.
RESULTS: Here we report an analysis of the genome sequences of the two biocontrol species Trichoderma atroviride (teleomorph Hypocrea atroviridis) and Trichoderma virens (formerly Gliocladium virens, teleomorph Hypocrea virens), and a comparison with Trichoderma reesei (teleomorph Hypocrea jecorina). These three Trichoderma species display a remarkable conservation of gene order (78 to 96%), and a lack of active mobile elements probably due to repeat-induced point mutation. Several gene families are expanded in the two mycoparasitic species relative to T. reesei or other ascomycetes, and are overrepresented in non-syntenic genome regions. A phylogenetic analysis shows that T. reesei and T. virens are derived relative to T. atroviride. The mycoparasitism-specific genes thus arose in a common Trichoderma ancestor but were subsequently lost in T. reesei.
CONCLUSIONS: The data offer a better understanding of mycoparasitism, and thus enforce the development of improved biocontrol strains for efficient and environmentally friendly protection of plants.

PubMedSearch : Kubicek_2011_Genome.Biol_12_R40
PubMedID: 21501500
Gene_locus related to this paper: hypai-g9nem6 , hypai-g9ng36 , hypai-g9ngu2 , hypai-g9nks5 , hypai-g9nks6 , hypai-g9nqe5 , hypai-g9nqk5 , hypai-g9nrx6 , hypai-g9nsx1 , hypai-g9ntn3 , hypai-g9nzc9 , hypai-g9nzd7 , hypai-g9p1t1 , hypai-g9p1v2 , hypai-g9p2n8 , hypai-g9p4z2 , hypai-g9p878 , hypai-g9pa17 , hypai-g9pbz9 , hypvg-g9mem8 , hypvg-g9mg52 , hypvg-g9mga2 , hypvg-g9mhi3 , hypvg-g9mjc7 , hypvg-g9mk44 , hypvg-g9mms1 , hypvg-g9mnf0 , hypvg-g9mng3 , hypvg-g9mpt0 , hypvg-g9mrp9 , hypvg-g9ms16 , hypvg-g9ms32 , hypvg-g9msv5 , hypvg-g9muh6 , hypvg-g9muk0 , hypvg-g9mwe2 , hypvg-g9my79 , hypvg-g9n0p7 , hypvg-g9n2g3 , hypvg-g9n2g4 , hypvg-g9n4k5 , hypvg-g9n9n0 , hypvg-g9n561 , hypvg-g9n988 , hypvg-g9nb12 , hypvg-g9nb54 , hypvg-g9nbh8 , hypai-g9npz7 , hypai-g9njw6 , hypvg-g9mx08 , hypvg-g9mlt2 , hypai-g9p4j3 , hypvg-g9nbd3 , hypai-g9nxf6 , hypvg-g9n3y9 , hypvg-g9mgs4 , hypai-g9p6m2 , hypvg-g9my62 , hypvg-g9nbv2 , hypvg-g9my22 , hypai-g9p2e2 , hypai-g9p596 , hypai-g9nf87 , hypvg-g9me87 , hypvg-g9ndn9 , hypai-g9niy5 , hypai-g9ntx6 , hypvg-g9n3e7 , hypai-g9nu29 , hypvg-g9n2z0 , hypvg-g9ndf4 , 9hypo-a0a2p4zt82 , hypvg-g9n0g0 , hypvg-g9muj2 , hypvg-g9mud0 , hypai-g9nkx5

Related information

Gene_locus hypai-g9nem6    hypai-g9ng36    hypai-g9ngu2    hypai-g9nks5    hypai-g9nks6    hypai-g9nqe5    hypai-g9nqk5    hypai-g9nrx6    hypai-g9nsx1    hypai-g9ntn3    hypai-g9nzc9    hypai-g9nzd7    hypai-g9p1t1    hypai-g9p1v2    hypai-g9p2n8    hypai-g9p4z2    hypai-g9p878    hypai-g9pa17    hypai-g9pbz9    hypvg-g9mem8    hypvg-g9mg52    hypvg-g9mga2    hypvg-g9mhi3    hypvg-g9mjc7    hypvg-g9mk44    hypvg-g9mms1    hypvg-g9mnf0    hypvg-g9mng3    hypvg-g9mpt0    hypvg-g9mrp9    hypvg-g9ms16    hypvg-g9ms32    hypvg-g9msv5    hypvg-g9muh6    hypvg-g9muk0    hypvg-g9mwe2    hypvg-g9my79    hypvg-g9n0p7    hypvg-g9n2g3    hypvg-g9n2g4    hypvg-g9n4k5    hypvg-g9n9n0    hypvg-g9n561    hypvg-g9n988    hypvg-g9nb12    hypvg-g9nb54    hypvg-g9nbh8    hypai-g9npz7    hypai-g9njw6    hypvg-g9mx08    hypvg-g9mlt2    hypai-g9p4j3    hypvg-g9nbd3    hypai-g9nxf6    hypvg-g9n3y9    hypvg-g9mgs4    hypai-g9p6m2    hypvg-g9my62    hypvg-g9nbv2    hypvg-g9my22    hypai-g9p2e2    hypai-g9p596    hypai-g9nf87    hypvg-g9me87    hypvg-g9ndn9    hypai-g9niy5    hypai-g9ntx6    hypvg-g9n3e7    hypai-g9nu29    hypvg-g9n2z0    hypvg-g9ndf4    9hypo-a0a2p4zt82    hypvg-g9n0g0    hypvg-g9muj2    hypvg-g9mud0    hypai-g9nkx5
Gene_locus_frgt hypai-g9nem6    hypai-g9ng36    hypai-g9ngu2    hypai-g9nks5    hypai-g9nks6    hypai-g9nqe5    hypai-g9nqk5    hypai-g9nrx6    hypai-g9nsx1    hypai-g9ntn3    hypai-g9nzc9    hypai-g9nzd7    hypai-g9p1t1    hypai-g9p1v2    hypai-g9p2n8    hypai-g9p4z2    hypai-g9p878    hypai-g9pa17    hypai-g9pbz9    hypvg-g9mem8    hypvg-g9mg52    hypvg-g9mga2    hypvg-g9mhi3    hypvg-g9mjc7    hypvg-g9mk44    hypvg-g9mms1    hypvg-g9mnf0    hypvg-g9mng3    hypvg-g9mpt0    hypvg-g9mrp9    hypvg-g9ms16    hypvg-g9ms32    hypvg-g9msv5    hypvg-g9muh6    hypvg-g9muk0    hypvg-g9mwe2    hypvg-g9my79    hypvg-g9n0p7    hypvg-g9n2g3    hypvg-g9n2g4    hypvg-g9n4k5    hypvg-g9n9n0    hypvg-g9n561    hypvg-g9n988    hypvg-g9nb12    hypvg-g9nb54    hypvg-g9nbh8    hypai-g9npz7    hypai-g9njw6    hypvg-g9mx08    hypvg-g9mlt2    hypai-g9p4j3    hypvg-g9nbd3    hypai-g9nxf6    hypvg-g9n3y9    hypvg-g9mgs4    hypai-g9p6m2    hypvg-g9my62    hypvg-g9nbv2    hypvg-g9my22    hypai-g9p2e2    hypai-g9p596    hypai-g9nf87    hypvg-g9me87    hypvg-g9ndn9    hypai-g9niy5    hypai-g9ntx6    hypvg-g9n3e7    hypai-g9nu29    hypvg-g9n2z0    hypvg-g9ndf4    9hypo-a0a2p4zt82    hypvg-g9n0g0    hypvg-g9muj2    hypvg-g9mud0    hypai-g9nkx5    hypai-g9nst0    hypai-g9p0k2    hypai-g9p3l0    hypvg-g9mup9    hypvg-g9mwe5    hypvg-g9my44

Citations formats

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Dohren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gomez-Rodriguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernandez-Onate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lubeck M, Lubeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV (2011)
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
Genome Biol 12 :R40

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Dohren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gomez-Rodriguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernandez-Onate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lubeck M, Lubeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV (2011)
Genome Biol 12 :R40