Paterson_2009_Nature_457_551

Reference

Title : The Sorghum bicolor genome and the diversification of grasses - Paterson_2009_Nature_457_551
Author(s) : Paterson AH , Bowers JE , Bruggmann R , Dubchak I , Grimwood J , Gundlach H , Haberer G , Hellsten U , Mitros T , Poliakov A , Schmutz J , Spannagl M , Tang H , Wang X , Wicker T , Bharti AK , Chapman J , Feltus FA , Gowik U , Grigoriev IV , Lyons E , Maher CA , Martis M , Narechania A , Otillar RP , Penning BW , Salamov AA , Wang Y , Zhang L , Carpita NC , Freeling M , Gingle AR , Hash CT , Keller B , Klein P , Kresovich S , McCann MC , Ming R , Peterson DG , Mehboob ur R , Ware D , Westhoff P , Mayer KF , Messing J , Rokhsar DS
Ref : Nature , 457 :551 , 2009
Abstract :

Sorghum, an African grass related to sugar cane and maize, is grown for food, feed, fibre and fuel. We present an initial analysis of the approximately 730-megabase Sorghum bicolor (L.) Moench genome, placing approximately 98% of genes in their chromosomal context using whole-genome shotgun sequence validated by genetic, physical and syntenic information. Genetic recombination is largely confined to about one-third of the sorghum genome with gene order and density similar to those of rice. Retrotransposon accumulation in recombinationally recalcitrant heterochromatin explains the approximately 75% larger genome size of sorghum compared with rice. Although gene and repetitive DNA distributions have been preserved since palaeopolyploidization approximately 70 million years ago, most duplicated gene sets lost one member before the sorghum-rice divergence. Concerted evolution makes one duplicated chromosomal segment appear to be only a few million years old. About 24% of genes are grass-specific and 7% are sorghum-specific. Recent gene and microRNA duplications may contribute to sorghum's drought tolerance.

PubMedSearch : Paterson_2009_Nature_457_551
PubMedID: 19189423
Gene_locus related to this paper: sorbi-b3vtb2 , sorbi-c5wp75 , sorbi-c5wts6 , sorbi-c5wu07 , sorbi-c5wvl7 , sorbi-c5ww85 , sorbi-c5ww86 , sorbi-c5wxa4 , sorbi-c5x1f6 , sorbi-c5x2x9 , sorbi-c5x5z9 , sorbi-c5x6q0 , sorbi-c5x230 , sorbi-c5x290 , sorbi-c5x345 , sorbi-c5x399 , sorbi-c5x610 , sorbi-c5xbm4 , sorbi-c5xct0 , sorbi-c5xdv0 , sorbi-c5xe87 , sorbi-c5xf40 , sorbi-c5xfu9 , sorbi-c5xh40 , sorbi-c5xh41 , sorbi-c5xh42 , sorbi-c5xh43 , sorbi-c5xh44 , sorbi-c5xh46 , sorbi-c5xhr2 , sorbi-c5xiw7 , sorbi-c5xjf0 , sorbi-c5xky2 , sorbi-c5xm54 , sorbi-c5xmb9 , sorbi-c5xmz5 , sorbi-c5xp10 , sorbi-c5xpm6 , sorbi-c5xr91 , sorbi-c5xr92 , sorbi-c5xs33 , sorbi-c5xtz0 , sorbi-c5xwd3 , sorbi-c5y0d2 , sorbi-c5y0h4 , sorbi-c5y3i5 , sorbi-c5y7x0 , sorbi-c5y517 , sorbi-c5y545 , sorbi-c5ydr3 , sorbi-c5yec0 , sorbi-c5yf71 , sorbi-c5yi32 , sorbi-c5yih2 , sorbi-c5ylw6 , sorbi-c5yn66 , sorbi-c5ynp8 , sorbi-c5yt11 , sorbi-c5yur5 , sorbi-c5ywz3 , sorbi-c5ywz4 , sorbi-c5yx73 , sorbi-c5yyn0 , sorbi-c5z2m6 , sorbi-c5z6a9 , sorbi-c5z6j1 , sorbi-c5z6s5 , sorbi-c5z177 , sorbi-Q9XE80 , sorbi-c5xyg4 , sorbi-c5z4q0 , sorbi-c5xly4 , sorbi-c5z4u8 , sorbi-c5xxg5 , sorbi-c5z9b9 , sorbi-a0a1z5r970 , sorbi-c5xhf9 , sorbi-c5yxt7 , sorbi-c5yxt6 , sorbi-c5y1m2 , sorbi-c5xdy6 , sorbi-a0a194ysf6 , sorbi-a0a1b6pnr2 , sorbi-a0a1b6qcb9 , sorbi-c5xx30 , sorbi-a0a1b6psg4 , sorbi-a0a1z5rj80 , sorbi-a0a1b6qfm2 , sorbi-a0a1b6qmu5 , sorbi-c6jru0

Related information

Gene_locus sorbi-b3vtb2    sorbi-c5wp75    sorbi-c5wts6    sorbi-c5wu07    sorbi-c5wvl7    sorbi-c5ww85    sorbi-c5ww86    sorbi-c5wxa4    sorbi-c5x1f6    sorbi-c5x2x9    sorbi-c5x5z9    sorbi-c5x6q0    sorbi-c5x230    sorbi-c5x290    sorbi-c5x345    sorbi-c5x399    sorbi-c5x610    sorbi-c5xbm4    sorbi-c5xct0    sorbi-c5xdv0    sorbi-c5xe87    sorbi-c5xf40    sorbi-c5xfu9    sorbi-c5xh40    sorbi-c5xh41    sorbi-c5xh42    sorbi-c5xh43    sorbi-c5xh44    sorbi-c5xh46    sorbi-c5xhr2    sorbi-c5xiw7    sorbi-c5xjf0    sorbi-c5xky2    sorbi-c5xm54    sorbi-c5xmb9    sorbi-c5xmz5    sorbi-c5xp10    sorbi-c5xpm6    sorbi-c5xr91    sorbi-c5xr92    sorbi-c5xs33    sorbi-c5xtz0    sorbi-c5xwd3    sorbi-c5y0d2    sorbi-c5y0h4    sorbi-c5y3i5    sorbi-c5y7x0    sorbi-c5y517    sorbi-c5y545    sorbi-c5ydr3    sorbi-c5yec0    sorbi-c5yf71    sorbi-c5yi32    sorbi-c5yih2    sorbi-c5ylw6    sorbi-c5yn66    sorbi-c5ynp8    sorbi-c5yt11    sorbi-c5yur5    sorbi-c5ywz3    sorbi-c5ywz4    sorbi-c5yx73    sorbi-c5yyn0    sorbi-c5z2m6    sorbi-c5z6a9    sorbi-c5z6j1    sorbi-c5z6s5    sorbi-c5z177    sorbi-Q9XE80    sorbi-c5xyg4    sorbi-c5z4q0    sorbi-c5xly4    sorbi-c5z4u8    sorbi-c5xxg5    sorbi-c5z9b9    sorbi-a0a1z5r970    sorbi-c5xhf9    sorbi-c5yxt7    sorbi-c5yxt6    sorbi-c5y1m2    sorbi-c5xdy6    sorbi-a0a194ysf6    sorbi-a0a1b6pnr2    sorbi-a0a1b6qcb9    sorbi-c5xx30    sorbi-a0a1b6psg4    sorbi-a0a1z5rj80    sorbi-a0a1b6qfm2    sorbi-a0a1b6qmu5    sorbi-c6jru0
Gene_locus_frgt sorbi-b3vtb2    sorbi-c5wp75    sorbi-c5wts6    sorbi-c5wu07    sorbi-c5wvl7    sorbi-c5ww85    sorbi-c5ww86    sorbi-c5wxa4    sorbi-c5x1f6    sorbi-c5x2x9    sorbi-c5x5z9    sorbi-c5x6q0    sorbi-c5x230    sorbi-c5x290    sorbi-c5x345    sorbi-c5x399    sorbi-c5x610    sorbi-c5xbm4    sorbi-c5xct0    sorbi-c5xdv0    sorbi-c5xe87    sorbi-c5xf40    sorbi-c5xfu9    sorbi-c5xh40    sorbi-c5xh41    sorbi-c5xh42    sorbi-c5xh43    sorbi-c5xh44    sorbi-c5xh46    sorbi-c5xhr2    sorbi-c5xiw7    sorbi-c5xjf0    sorbi-c5xky2    sorbi-c5xm54    sorbi-c5xmb9    sorbi-c5xmz5    sorbi-c5xp10    sorbi-c5xpm6    sorbi-c5xr91    sorbi-c5xr92    sorbi-c5xs33    sorbi-c5xtz0    sorbi-c5xwd3    sorbi-c5y0d2    sorbi-c5y0h4    sorbi-c5y3i5    sorbi-c5y7x0    sorbi-c5y517    sorbi-c5y545    sorbi-c5ydr3    sorbi-c5yec0    sorbi-c5yf71    sorbi-c5yi32    sorbi-c5yih2    sorbi-c5ylw6    sorbi-c5yn66    sorbi-c5ynp8    sorbi-c5yt11    sorbi-c5yur5    sorbi-c5ywz3    sorbi-c5ywz4    sorbi-c5yx73    sorbi-c5yyn0    sorbi-c5z2m6    sorbi-c5z6a9    sorbi-c5z6j1    sorbi-c5z6s5    sorbi-c5z177    sorbi-Q9XE80    sorbi-c5xyg4    sorbi-c5z4q0    sorbi-c5xly4    sorbi-c5z4u8    sorbi-c5xxg5    sorbi-c5z9b9    sorbi-a0a1z5r970    sorbi-c5xhf9    sorbi-c5yxt7    sorbi-c5yxt6    sorbi-c5y1m2    sorbi-c5xdy6    sorbi-a0a194ysf6    sorbi-a0a1b6pnr2    sorbi-a0a1b6qcb9    sorbi-c5xx30    sorbi-a0a1b6psg4    sorbi-a0a1z5rj80    sorbi-a0a1b6qfm2    sorbi-a0a1b6qmu5    sorbi-c6jru0    sorbi-c5wsk4    sorbi-c5xer8    sorbi-c5y3i4    sorbi-c5yfu6    sorbi-c5z6s8

Citations formats

Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob ur R, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS (2009)
The Sorghum bicolor genome and the diversification of grasses
Nature 457 :551

Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob ur R, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS (2009)
Nature 457 :551