Pleiss J

General

Full name : Pleiss Jurgen

First name : Jurgen

Mail : Institute of Technical Biochemistry, University of Stuttgart, Allmandring 31, 70569 Stuttgart

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Country : Germany

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References (43)

Title : EnzymeML: seamless data flow and modeling of enzymatic data - Lauterbach_2023_Nat.Methods_20_400
Author(s) : Lauterbach S , Dienhart H , Range J , Malzacher S , Sporing JD , Rother D , Pinto MF , Martins P , Lagerman CE , Bommarius AS , Host AV , Woodley JM , Ngubane S , Kudanga T , Bergmann FT , Rohwer JM , Iglezakis D , Weidemann A , Wittig U , Kettner C , Swainston N , Schnell S , Pleiss J
Ref : Nat Methods , 20 :400 , 2023
PubMedID: 36759590

Title : Plastics degradation by hydrolytic enzymes: The plastics-active enzymes database-PAZy - Buchholz_2022_Proteins_90_1443
Author(s) : Buchholz PCF , Feuerriegel G , Zhang H , Perez-Garcia P , Nover LL , Chow J , Streit WR , Pleiss J
Ref : Proteins , 90 :1443 , 2022
PubMedID: 35175626

Title : Standardized Data, Scalable Documentation, Sustainable Storage - EnzymeML As A Basis For FAIR Data Management In Biocatalysis - Pleiss_2021_ChemCatChem_13_3909
Author(s) : Pleiss J
Ref : ChemCatChem , 13 :3909 , 2021
PubMedID:

Title : Plastics degradation by hydrolytic enzymes: the Plastics-Active Enzymes Database - PAZy - Buchholz_2021_Authorea__
Author(s) : Buchholz PCF , Zhang H , Perez-Garcia P , Nover LL , Chow J , Streit WR , Pleiss J
Ref : Authorea , : , 2021
PubMedID:

Title : Molecular Mechanism of Methanol Inhibition in CALB-Catalyzed Alcoholysis: Analyzing Molecular Dynamics Simulations by a Markov State Model - Carvalho_2021_J.Chem.Theory.Comput__
Author(s) : Carvalho HF , Ferrario V , Pleiss J
Ref : J Chem Theory Comput , : , 2021
PubMedID: 34494846

Title : The abundance of mRNA transcripts of bacteroidetal polyethylene terephthalate (PET) esterase genes may indicate a role in marine plastic degradation - Zhang_2021_ResearchSquare__
Author(s) : Zhang H , Dierkes R , Perez-Garcia P , Weigert S , Sternagel S , Hallam S , Schott T , Juergens K , Vollstedt C , Chibani C , Danso D , Buchholz PCF , Pleiss J , Almeida A , Hocker B , Schmitz R , Chow J , Streit WR
Ref : ResearchSquare , : , 2021
PubMedID:
Gene_locus related to this paper: flutr-f2ie04 , 9flao-a0a0c1f4u8 , 9flao-kjj39608 , 9flao-a0a1m6f5v0 , 9flao-a0a330mq60

Title : The Bacteroidetes Aequorivita sp. and Kaistella jeonii Produce Promiscuous Esterases With PET-Hydrolyzing Activity - Zhang_2022_Front.Microbiol_12_803896
Author(s) : Zhang H , Perez-Garcia P , Dierkes RF , Applegate V , Schumacher J , Chibani CM , Sternagel S , Preuss L , Weigert S , Schmeisser C , Danso D , Pleiss J , Almeida A , Hocker B , Hallam SJ , Schmitz RA , Smits SHJ , Chow J , Streit WR
Ref : Front Microbiol , 12 :803896 , 2021
PubMedID: 35069509
Gene_locus related to this paper: flutr-f2ie04 , 9flao-a0a0c1f4u8 , 9flao-kjj39608 , 9flao-a0a330mq60

Title : The modular structure of alpha\/beta-hydrolases - Bauer_2020_FEBS.J_287_1035
Author(s) : Bauer TL , Buchholz PCF , Pleiss J
Ref : Febs J , 287 :1035 , 2020
PubMedID: 31545554

Title : Diverse effects of aqueous polar co-solvents on Candida antarctica lipase B - Mangiagalli_2020_Int.J.Biol.Macromol_150_930
Author(s) : Mangiagalli M , Carvalho H , Natalello A , Ferrario V , Pennati ML , Barbiroli A , Lotti M , Pleiss J , Brocca S
Ref : Int J Biol Macromol , 150 :930 , 2020
PubMedID: 32068052

Title : Determinants and prediction of esterase substrate promiscuity patterns - Martinez-Martinez_2018_ACS.Chem.Biol_13_225
Author(s) : Martinez-Martinez M , Coscolin C , Santiago G , Chow J , Stogios PJ , Bargiela R , Gertler C , Navarro-Fernandez J , Bollinger A , Thies S , Mendez-Garcia C , Popovic A , Brown G , Chernikova TN , Garcia-Moyano A , Bjergah GE , Perez-Garcia P , Hai T , Del Pozo MV , Stokke R , Steen IH , Cui H , Xu X , Nocek BP , Alcaide M , Distaso M , Mesa V , Pelaez AI , Sanchez J , Buchholz PCF , Pleiss J , Fernandez-Guerra A , Glockner FO , Golyshina OV , Yakimov MM , Savchenko A , Jaeger KE , Yakunin AF , Streit WR , Golyshin PN , Guallar V , Ferrer M
Ref : ACS Chemical Biology , 13 :225 , 2018
PubMedID: 29182315
Gene_locus related to this paper: 9zzzz-a0a2k8jn75 , 9zzzz-a0a2k8jt94 , 9zzzz-a0a0g3fj44 , 9zzzz-a0a0g3fh10 , 9zzzz-a0a0g3fh03 , 9bact-a0a1s5qkj8 , 9zzzz-a0a0g3feh5 , 9zzzz-a0a0g3fkz4 , 9zzzz-a0a0g3fh07 , 9zzzz-a0a0g3fh34 , 9zzzz-a0a0g3fh31 , 9bact-KY458167 , alcbs-q0vqa3 , 9bact-a0a1s5qki8 , 9zzzz-a0a0g3feq8 , 9zzzz-a0a0g3feh8 , 9zzzz-a0a0g3fh19 , 9bact-KY203037 , 9bact-a0a1s5ql22 , 9bact-a0a1s5qm34 , 9bact-KY203034 , 9bact-r9qzg0 , 9bact-a0a1s5qly8 , 9zzzz-a0a0g3fkz8 , 9zzzz-a0a0g3feg9 , 9zzzz-KY203033 , 9zzzz-a0a0g3fes4 , 9zzzz-a0a0g3fh42 , 9bact-a0a1s5qlx2 , 9zzzz-KY483651 , 9bact-a0a1s5qmh4 , 9zzzz-KY203032 , 9zzzz-EH87 , 9zzzz-a0a0g3fei1 , 9zzzz-a0a0g3fet2 , 9zzzz-KY483647 , 9zzzz-EH82 , 9zzzz-a0a0g3fe15 , 9bact-KY203031 , 9bact-t1w006 , 9zzzz-a0a0g3fet6 , 9bact-KY458164 , geoth-g8myf3 , 9bact-a0a1s5ql04 , 9gamm-a0a1y0ihk7 , 9bact-a0a1s5qly6 , 9bact-a0a1s5qkg4 , 9bact-a0a1s5qkm4 , 9gamm-s5tv80 , 9gamm-a0a0c4zhg2 , 9zzzz-t1b379 , 9gamm-KY483646 , 9bact-KY458160 , 9zzzz-a0a0g3fj57 , 9gamm-s5t8349 , 9arch-KY203036 , 9bact-KY458168 , 9zzzz-a0a0g3fes0 , 9zzzz-t1be47 , 9bact-KY458159 , 9zzzz-a0a0g3fh39 , 9bact-t1vzd5 , 9prot-EH41 , 9bact-Lip114 , alcbs-q0vt77 , 9bact-a0a1s5qke6 , 9bact-a0a1s5qkf3 , 9prot-SRP030024 , 9gamm-s5t532 , 9bact-a0a1s5qkl2 , 9bact-a0a1s5qkk8 , 9zzzz-KY203030 , 9zzzz-t1d4I7 , 9prot-KY019260 , 9bact-a0a1s5qm38 , 9arch-KY458161 , 9prot-KY010302 , 9zzzz-a0a0g3fl25 , 9actn-KY010298 , 9gamm-s5u059 , 9bact-a0a1s5qmi7 , 9bact-KY010297 , 9bact-KY483642 , 9bact-a0a1s5qkj1 , 9bact-KY010299 , 9bact-KY483648 , alcbs-q0vtl7 , 9bact-a0a1s5qf1 , 9bact-a0a1s5qkg0 , 9bact-a0a0h4tgu6 , 9bact-MilE3 , 9bact-LAE6 , 9alte-MGS-MT1 , 9bact-r9qzf7 , 9gamm-k0c6t6 , alcbs-q0vl36 , alcbs-q0vlq1 , alcbs-q0vq49 , bacsu-pnbae , canar-LipB , canan-lipasA , geost-lipas , marav-a1u5n0 , pseps-i7k8x5 , staep-GEHD , symth-q67mr3 , altma-s5cfn7 , cycsp-k0c2b8 , alcbs-q0vlk5 , 9bact-k7qe48 , 9bact-MGS-M1 , 9bact-MGS-M2 , 9bact-a0a0b5kns5 , 9zzzz-a0a0g3fej4 , 9zzzz-a0a0g3fj60 , 9zzzz-a0a0g3fej0 , 9zzzz-a0a0g3fj64 , 9bact-a0a0b5kc16 , 9zzzz-a0a0g3feg6 , 9zzzz-a0a0g3feu6

Title : Self-Assembly Nanostructures of Triglyceride-Water Interfaces Determine Functional Conformations of Candida antarctica Lipase B - Benson_2017_Langmuir_33_3151
Author(s) : Benson SP , Pleiss J
Ref : Langmuir , 33 :3151 , 2017
PubMedID: 28274117

Title : BioCatNet: A Database System for the Integration of Enzyme Sequences and Biocatalytic Experiments - Buchholz_2016_Chembiochem_17_2093
Author(s) : Buchholz PCF , Vogel C , Reusch W , Pohl M , Rother D , Spiess AC , Pleiss J
Ref : Chembiochem , 17 :2093 , 2016
PubMedID: 27562499

Title : Binding of Solvent Molecules to a Protein Surface in Binary Mixtures Follows a Competitive Langmuir Model - Kulschewski_2016_Langmuir_32_8960
Author(s) : Kulschewski T , Pleiss J
Ref : Langmuir , 32 :8960 , 2016
PubMedID: 27523916

Title : The effect of thermodynamic properties of solvent mixtures explains the difference between methanol and ethanol in C.antarctica lipase B catalyzed alcoholysis - Sasso_2015_J.Biotechnol_214_1
Author(s) : Sasso F , Kulschewski T , Secundo F , Lotti Marina , Pleiss J
Ref : J Biotechnol , 214 :1 , 2015
PubMedID: 26325200

Title : Effects of methanol on lipases: molecular, kinetic and process issues in the production of biodiesel - Lotti_2015_Biotechnol.J_10_22
Author(s) : Lotti Marina , Pleiss J , Valero F , Ferrer P
Ref : Biotechnol J , 10 :22 , 2015
PubMedID: 25046365

Title : Solvent Flux Method (SFM): A Case Study of Water Access to Candida antarctica Lipase B - Benson_2014_J.Chem.Theory.Comput_10_5206
Author(s) : Benson SP , Pleiss J
Ref : J Chem Theory Comput , 10 :5206 , 2014
PubMedID: 26584392

Title : Molecular mechanism of deactivation of C. antarctica lipase B by methanol - Kulschewski_2013_J.Biotechnol_168_462
Author(s) : Kulschewski T , Sasso F , Secundo F , Lotti Marina , Pleiss J
Ref : J Biotechnol , 168 :462 , 2013
PubMedID: 24144811

Title : Molecular modeling of lipase binding to a substrate-water interface - Gruber_2012_Methods.Mol.Biol_861_313
Author(s) : Gruber CC , Pleiss J
Ref : Methods Mol Biol , 861 :313 , 2012
PubMedID: 22426727

Title : Rational design of Pseudozyma antarctica lipase B yielding a general esterification catalyst - Liu_2010_Chembiochem_11_789
Author(s) : Liu D , Trodler P , Eiben S , Koschorreck K , Muller M , Pleiss J , Maurer SC , Branneby C , Schmid RD , Hauer B
Ref : Chembiochem , 11 :789 , 2010
PubMedID: 20209560

Title : Evolution of stability in a cold-active enzyme elicits specificity relaxation and highlights substrate-related effects on temperature adaptation - Gatti-Lafranconi_2010_J.Mol.Biol_395_155
Author(s) : Gatti-Lafranconi P , Natalello A , Rehm S , Doglia SM , Pleiss J , Lotti M
Ref : Journal of Molecular Biology , 395 :155 , 2010
PubMedID: 19850050

Title : Engineering of Candida antarctica lipase B for hydrolysis of bulky carboxylic acid esters - Juhl_2010_J.Biotechnol_150_474
Author(s) : Juhl PB , Doderer K , Hollmann F , Thum O , Pleiss J
Ref : J Biotechnol , 150 :474 , 2010
PubMedID: 20887757

Title : Structural classification by the Lipase Engineering Database: a case study of Candida antarctica lipase A - Widmann_2010_BMC.Genomics_11_123
Author(s) : Widmann M , Juhl PB , Pleiss J
Ref : BMC Genomics , 11 :123 , 2010
PubMedID: 20170513

Title : Solvent-induced lid opening in lipases: a molecular dynamics study - Rehm_2010_Protein.Sci_19_2122
Author(s) : Rehm S , Trodler P , Pleiss J
Ref : Protein Science , 19 :2122 , 2010
PubMedID: 20812327

Title : Molecular mechanism of the hydration of Candida antarctica lipase B in the gas phase: Water adsorption isotherms and molecular dynamics simulations - Branco_2009_Chembiochem_10_2913
Author(s) : Branco RJ , Graber M , Denis V , Pleiss J
Ref : Chembiochem , 10 :2913 , 2009
PubMedID: 19847841

Title : Morphing activity between structurally similar enzymes: from heme-free bromoperoxidase to lipase - Chen_2009_Biochemistry_48_11496
Author(s) : Chen B , Cai Z , Wu W , Huang Y , Pleiss J , Lin Z
Ref : Biochemistry , 48 :11496 , 2009
PubMedID: 19883129

Title : Modelling substrate specificity and enantioselectivity for lipases and esterases by substrate-imprinted docking - Juhl_2009_BMC.Struct.Biol_9_39
Author(s) : Juhl PB , Trodler P , Tyagi S , Pleiss J
Ref : BMC Struct Biol , 9 :39 , 2009
PubMedID: 19493341

Title : The PHA Depolymerase Engineering Database: A systematic analysis tool for the diverse family of polyhydroxyalkanoate (PHA) depolymerases - Knoll_2009_BMC.Bioinformatics_10_89
Author(s) : Knoll M , Hamm TM , Wagner F , Martinez V , Pleiss J
Ref : BMC Bioinformatics , 10 :89 , 2009
PubMedID: 19296857

Title : Modeling of solvent-dependent conformational transitions in Burkholderia cepacia lipase - Trodler_2009_BMC.Struct.Biol_9_38
Author(s) : Trodler P , Schmid RD , Pleiss J
Ref : BMC Struct Biol , 9 :38 , 2009
PubMedID: 19476626

Title : Analysis of the distribution of functionally relevant rare codons - Widmann_2008_BMC.Genomics_9_207
Author(s) : Widmann M , Clairo M , Dippon J , Pleiss J
Ref : BMC Genomics , 9 :207 , 2008
PubMedID: 18457591

Title : Rational design of a new one-step purification strategy for Candida antarctica lipase B by ion-exchange chromatography - Trodler_2008_J.Chromatogr.A_1179_161
Author(s) : Trodler P , Nieveler J , Rusnak M , Schmid RD , Pleiss J
Ref : Journal of Chromatography A , 1179 :161 , 2008
PubMedID: 18154980

Title : Modeling structure and flexibility of Candida antarctica lipase B in organic solvents - Trodler_2008_BMC.Struct.Biol_8_9
Author(s) : Trodler P , Pleiss J
Ref : BMC Struct Biol , 8 :9 , 2008
PubMedID: 18254946

Title : Biochemical profiling in silico--predicting substrate specificities of large enzyme families - Tyagi_2006_J.Biotechnol_124_108
Author(s) : Tyagi S , Pleiss J
Ref : J Biotechnol , 124 :108 , 2006
PubMedID: 16519956

Title : DWARF--a data warehouse system for analyzing protein families - Fischer_2006_BMC.Bioinformatics_7_495
Author(s) : Fischer M , Thai QK , Grieb M , Pleiss J
Ref : BMC Bioinformatics , 7 :495 , 2006
PubMedID: 17094801

Title : How to find soluble proteins: a comprehensive analysis of alpha\/beta hydrolases for recombinant expression in E. coli - Koschorreck_2005_BMC.Genomics_6_49
Author(s) : Koschorreck M , Fischer M , Barth S , Pleiss J
Ref : BMC Genomics , 6 :49 , 2005
PubMedID: 15804363

Title : Structure and dynamics of Candida rugosa lipase: the role of organic solvent - Tejo_2004_J.Mol.Model_10_358
Author(s) : Tejo BA , Salleh AB , Pleiss J
Ref : J Mol Model , 10 :358 , 2004
PubMedID: 15597204

Title : The database of epoxide hydrolases and haloalkane dehalogenases: one structure, many functions - Barth_2004_Bioinformatics_20_2845
Author(s) : Barth S , Fischer M , Schmid RD , Pleiss J
Ref : Bioinformatics , 20 :2845 , 2004
PubMedID: 15117755

Title : Sequence and structure of epoxide hydrolases: a systematic analysis - Barth_2004_Proteins_55_846
Author(s) : Barth S , Fischer M , Schmid RD , Pleiss J
Ref : Proteins , 55 :846 , 2004
PubMedID: 15146483

Title : A molecular mechanism of enantiorecognition of tertiary alcohols by carboxylesterases - Henke_2003_Chembiochem_4_485
Author(s) : Henke E , Bornscheuer UT , Schmid RD , Pleiss J
Ref : Chembiochem , 4 :485 , 2003
PubMedID: 12794858

Title : Activity of lipases and esterases towards tertiary alcohols: insights into structure-function relationships -
Author(s) : Henke E , Pleiss J , Bornscheuer UT
Ref : Angew Chem Int Ed Engl , 41 :3211 , 2002
PubMedID: 12207392

Title : Blocking the tunnel: engineering of Candida rugosa lipase mutants with short chain length specificity - Schmitt_2002_Protein.Eng_15_595
Author(s) : Schmitt J , Brocca S , Schmid RD , Pleiss J
Ref : Protein Engineering , 15 :595 , 2002
PubMedID: 12200542

Title : A model of the pressure dependence of the enantioselectivity of Candida rugosalipase towards (+\/-)-menthol - Kahlow_2001_Protein.Sci_10_1942
Author(s) : Kahlow UH , Schmid RD , Pleiss J
Ref : Protein Science , 10 :1942 , 2001
PubMedID: 11567085
Gene_locus related to this paper: canru-1lipa

Title : Probing the acyl binding site of acetylcholinesterase by protein engineering - Pleiss_1999_J.Mol.Catal.B.Enzym_6_287
Author(s) : Pleiss J , Mionetto N , Schmid RD
Ref : J Mol Catal B Enzym , 6 :287 , 1999
PubMedID:

Title : Anatomy of lipase binding sites: the scissile fatty acid binding site - Pleiss_1998_Chem.Phys.Lipids_93_67
Author(s) : Pleiss J , Fischer M , Schmid RD
Ref : Chemistry & Physic of Lipids , 93 :67 , 1998
PubMedID: 9720251