Full name : Pleiss Jurgen
First name : Jurgen
Mail : Institute of Technical Biochemistry, University of Stuttgart, Allmandring 31, 70569 Stuttgart
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Country : Germany
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Comment
| Title : FAIR Data and Software: Improving Efficiency and Quality of Biocatalytic Science - Pleiss_2024_ACS.Catal_14_2709 |
| Author(s) : Pleiss J |
| Ref : ACS Catal , 14 :2709 , 2024 |
| Abstract : |
| PubMedSearch : Pleiss_2024_ACS.Catal_14_2709 |
| PubMedID: |
| Title : EnzymeML: seamless data flow and modeling of enzymatic data - Lauterbach_2023_Nat.Methods_20_400 |
| Author(s) : Lauterbach S , Dienhart H , Range J , Malzacher S , Sporing JD , Rother D , Pinto MF , Martins P , Lagerman CE , Bommarius AS , Host AV , Woodley JM , Ngubane S , Kudanga T , Bergmann FT , Rohwer JM , Iglezakis D , Weidemann A , Wittig U , Kettner C , Swainston N , Schnell S , Pleiss J |
| Ref : Nat Methods , 20 :400 , 2023 |
| Abstract : |
| PubMedSearch : Lauterbach_2023_Nat.Methods_20_400 |
| PubMedID: 36759590 |
| Title : Plastics degradation by hydrolytic enzymes: The plastics-active enzymes database-PAZy - Buchholz_2022_Proteins_90_1443 |
| Author(s) : Buchholz PCF , Feuerriegel G , Zhang H , Perez-Garcia P , Nover LL , Chow J , Streit WR , Pleiss J |
| Ref : Proteins , 90 :1443 , 2022 |
| Abstract : |
| PubMedSearch : Buchholz_2022_Proteins_90_1443 |
| PubMedID: 35175626 |
| Title : The abundance of mRNA transcripts of bacteroidetal polyethylene terephthalate (PET) esterase genes may indicate a role in marine plastic degradation - Zhang_2021_ResearchSquare__ |
| Author(s) : Zhang H , Dierkes R , Perez-Garcia P , Weigert S , Sternagel S , Hallam S , Schott T , Juergens K , Vollstedt C , Chibani C , Danso D , Buchholz PCF , Pleiss J , Almeida A , Hocker B , Schmitz R , Chow J , Streit WR |
| Ref : ResearchSquare , : , 2021 |
| Abstract : |
| PubMedSearch : Zhang_2021_ResearchSquare__ |
| PubMedID: |
| Gene_locus related to this paper: flutr-f2ie04 , 9flao-a0a0c1f4u8 , 9flao-kjj39608 , 9flao-a0a1m6f5v0 , 9flao-a0a330mq60 |
| Title : The Bacteroidetes Aequorivita sp. and Kaistella jeonii Produce Promiscuous Esterases With PET-Hydrolyzing Activity - Zhang_2022_Front.Microbiol_12_803896 |
| Author(s) : Zhang H , Perez-Garcia P , Dierkes RF , Applegate V , Schumacher J , Chibani CM , Sternagel S , Preuss L , Weigert S , Schmeisser C , Danso D , Pleiss J , Almeida A , Hocker B , Hallam SJ , Schmitz RA , Smits SHJ , Chow J , Streit WR |
| Ref : Front Microbiol , 12 :803896 , 2021 |
| Abstract : |
| PubMedSearch : Zhang_2022_Front.Microbiol_12_803896 |
| PubMedID: 35069509 |
| Gene_locus related to this paper: flutr-f2ie04 , 9flao-a0a0c1f4u8 , 9flao-kjj39608 , 9flao-a0a330mq60 |
| Title : Molecular Mechanism of Methanol Inhibition in CALB-Catalyzed Alcoholysis: Analyzing Molecular Dynamics Simulations by a Markov State Model - Carvalho_2021_J.Chem.Theory.Comput__ |
| Author(s) : Carvalho HF , Ferrario V , Pleiss J |
| Ref : J Chem Theory Comput , : , 2021 |
| Abstract : |
| PubMedSearch : Carvalho_2021_J.Chem.Theory.Comput__ |
| PubMedID: 34494846 |
| Title : Plastics degradation by hydrolytic enzymes: the Plastics-Active Enzymes Database - PAZy - Buchholz_2021_Authorea__ |
| Author(s) : Buchholz PCF , Zhang H , Perez-Garcia P , Nover LL , Chow J , Streit WR , Pleiss J |
| Ref : Authorea , : , 2021 |
| Abstract : |
| PubMedSearch : Buchholz_2021_Authorea__ |
| PubMedID: |
| Title : Standardized Data, Scalable Documentation, Sustainable Storage - EnzymeML As A Basis For FAIR Data Management In Biocatalysis - Pleiss_2021_ChemCatChem_13_3909 |
| Author(s) : Pleiss J |
| Ref : ChemCatChem , 13 :3909 , 2021 |
| Abstract : |
| PubMedSearch : Pleiss_2021_ChemCatChem_13_3909 |
| PubMedID: |
| Title : The modular structure of alpha\/beta-hydrolases - Bauer_2020_FEBS.J_287_1035 |
| Author(s) : Bauer TL , Buchholz PCF , Pleiss J |
| Ref : Febs J , 287 :1035 , 2020 |
| Abstract : |
| PubMedSearch : Bauer_2020_FEBS.J_287_1035 |
| PubMedID: 31545554 |
| Title : Diverse effects of aqueous polar co-solvents on Candida antarctica lipase B - Mangiagalli_2020_Int.J.Biol.Macromol_150_930 |
| Author(s) : Mangiagalli M , Carvalho H , Natalello A , Ferrario V , Pennati ML , Barbiroli A , Lotti M , Pleiss J , Brocca S |
| Ref : Int J Biol Macromol , 150 :930 , 2020 |
| Abstract : |
| PubMedSearch : Mangiagalli_2020_Int.J.Biol.Macromol_150_930 |
| PubMedID: 32068052 |
| Title : Self-Assembly Nanostructures of Triglyceride-Water Interfaces Determine Functional Conformations of Candida antarctica Lipase B - Benson_2017_Langmuir_33_3151 |
| Author(s) : Benson SP , Pleiss J |
| Ref : Langmuir , 33 :3151 , 2017 |
| Abstract : |
| PubMedSearch : Benson_2017_Langmuir_33_3151 |
| PubMedID: 28274117 |
| Title : BioCatNet: A Database System for the Integration of Enzyme Sequences and Biocatalytic Experiments - Buchholz_2016_Chembiochem_17_2093 |
| Author(s) : Buchholz PCF , Vogel C , Reusch W , Pohl M , Rother D , Spiess AC , Pleiss J |
| Ref : Chembiochem , 17 :2093 , 2016 |
| Abstract : |
| PubMedSearch : Buchholz_2016_Chembiochem_17_2093 |
| PubMedID: 27562499 |
| Title : Binding of Solvent Molecules to a Protein Surface in Binary Mixtures Follows a Competitive Langmuir Model - Kulschewski_2016_Langmuir_32_8960 |
| Author(s) : Kulschewski T , Pleiss J |
| Ref : Langmuir , 32 :8960 , 2016 |
| Abstract : |
| PubMedSearch : Kulschewski_2016_Langmuir_32_8960 |
| PubMedID: 27523916 |
| Title : Effects of methanol on lipases: molecular, kinetic and process issues in the production of biodiesel - Lotti_2015_Biotechnol.J_10_22 |
| Author(s) : Lotti Marina , Pleiss J , Valero F , Ferrer P |
| Ref : Biotechnol J , 10 :22 , 2015 |
| Abstract : |
| PubMedSearch : Lotti_2015_Biotechnol.J_10_22 |
| PubMedID: 25046365 |
| Title : The effect of thermodynamic properties of solvent mixtures explains the difference between methanol and ethanol in C.antarctica lipase B catalyzed alcoholysis - Sasso_2015_J.Biotechnol_214_1 |
| Author(s) : Sasso F , Kulschewski T , Secundo F , Lotti Marina , Pleiss J |
| Ref : J Biotechnol , 214 :1 , 2015 |
| Abstract : |
| PubMedSearch : Sasso_2015_J.Biotechnol_214_1 |
| PubMedID: 26325200 |
| Title : Solvent Flux Method (SFM): A Case Study of Water Access to Candida antarctica Lipase B - Benson_2014_J.Chem.Theory.Comput_10_5206 |
| Author(s) : Benson SP , Pleiss J |
| Ref : J Chem Theory Comput , 10 :5206 , 2014 |
| Abstract : |
| PubMedSearch : Benson_2014_J.Chem.Theory.Comput_10_5206 |
| PubMedID: 26584392 |
| Title : Molecular mechanism of deactivation of C. antarctica lipase B by methanol - Kulschewski_2013_J.Biotechnol_168_462 |
| Author(s) : Kulschewski T , Sasso F , Secundo F , Lotti Marina , Pleiss J |
| Ref : J Biotechnol , 168 :462 , 2013 |
| Abstract : |
| PubMedSearch : Kulschewski_2013_J.Biotechnol_168_462 |
| PubMedID: 24144811 |
| Title : Molecular modeling of lipase binding to a substrate-water interface - Gruber_2012_Methods.Mol.Biol_861_313 |
| Author(s) : Gruber CC , Pleiss J |
| Ref : Methods Mol Biol , 861 :313 , 2012 |
| Abstract : |
| PubMedSearch : Gruber_2012_Methods.Mol.Biol_861_313 |
| PubMedID: 22426727 |
| Title : Solvent-induced lid opening in lipases: a molecular dynamics study - Rehm_2010_Protein.Sci_19_2122 |
| Author(s) : Rehm S , Trodler P , Pleiss J |
| Ref : Protein Science , 19 :2122 , 2010 |
| Abstract : |
| PubMedSearch : Rehm_2010_Protein.Sci_19_2122 |
| PubMedID: 20812327 |
| Title : Structural classification by the Lipase Engineering Database: a case study of Candida antarctica lipase A - Widmann_2010_BMC.Genomics_11_123 |
| Author(s) : Widmann M , Juhl PB , Pleiss J |
| Ref : BMC Genomics , 11 :123 , 2010 |
| Abstract : |
| PubMedSearch : Widmann_2010_BMC.Genomics_11_123 |
| PubMedID: 20170513 |
| Title : Evolution of stability in a cold-active enzyme elicits specificity relaxation and highlights substrate-related effects on temperature adaptation - Gatti-Lafranconi_2010_J.Mol.Biol_395_155 |
| Author(s) : Gatti-Lafranconi P , Natalello A , Rehm S , Doglia SM , Pleiss J , Lotti M |
| Ref : Journal of Molecular Biology , 395 :155 , 2010 |
| Abstract : |
| PubMedSearch : Gatti-Lafranconi_2010_J.Mol.Biol_395_155 |
| PubMedID: 19850050 |
| Title : Rational design of Pseudozyma antarctica lipase B yielding a general esterification catalyst - Liu_2010_Chembiochem_11_789 |
| Author(s) : Liu D , Trodler P , Eiben S , Koschorreck K , Muller M , Pleiss J , Maurer SC , Branneby C , Schmid RD , Hauer B |
| Ref : Chembiochem , 11 :789 , 2010 |
| Abstract : |
| PubMedSearch : Liu_2010_Chembiochem_11_789 |
| PubMedID: 20209560 |
| Title : Engineering of Candida antarctica lipase B for hydrolysis of bulky carboxylic acid esters - Juhl_2010_J.Biotechnol_150_474 |
| Author(s) : Juhl PB , Doderer K , Hollmann F , Thum O , Pleiss J |
| Ref : J Biotechnol , 150 :474 , 2010 |
| Abstract : |
| PubMedSearch : Juhl_2010_J.Biotechnol_150_474 |
| PubMedID: 20887757 |
| Title : Morphing activity between structurally similar enzymes: from heme-free bromoperoxidase to lipase - Chen_2009_Biochemistry_48_11496 |
| Author(s) : Chen B , Cai Z , Wu W , Huang Y , Pleiss J , Lin Z |
| Ref : Biochemistry , 48 :11496 , 2009 |
| Abstract : |
| PubMedSearch : Chen_2009_Biochemistry_48_11496 |
| PubMedID: 19883129 |
| Title : Modeling of solvent-dependent conformational transitions in Burkholderia cepacia lipase - Trodler_2009_BMC.Struct.Biol_9_38 |
| Author(s) : Trodler P , Schmid RD , Pleiss J |
| Ref : BMC Struct Biol , 9 :38 , 2009 |
| Abstract : |
| PubMedSearch : Trodler_2009_BMC.Struct.Biol_9_38 |
| PubMedID: 19476626 |
| Title : The PHA Depolymerase Engineering Database: A systematic analysis tool for the diverse family of polyhydroxyalkanoate (PHA) depolymerases - Knoll_2009_BMC.Bioinformatics_10_89 |
| Author(s) : Knoll M , Hamm TM , Wagner F , Martinez V , Pleiss J |
| Ref : BMC Bioinformatics , 10 :89 , 2009 |
| Abstract : |
| PubMedSearch : Knoll_2009_BMC.Bioinformatics_10_89 |
| PubMedID: 19296857 |
| Title : Molecular mechanism of the hydration of Candida antarctica lipase B in the gas phase: Water adsorption isotherms and molecular dynamics simulations - Branco_2009_Chembiochem_10_2913 |
| Author(s) : Branco RJ , Graber M , Denis V , Pleiss J |
| Ref : Chembiochem , 10 :2913 , 2009 |
| Abstract : |
| PubMedSearch : Branco_2009_Chembiochem_10_2913 |
| PubMedID: 19847841 |
| Title : Modelling substrate specificity and enantioselectivity for lipases and esterases by substrate-imprinted docking - Juhl_2009_BMC.Struct.Biol_9_39 |
| Author(s) : Juhl PB , Trodler P , Tyagi S , Pleiss J |
| Ref : BMC Struct Biol , 9 :39 , 2009 |
| Abstract : |
| PubMedSearch : Juhl_2009_BMC.Struct.Biol_9_39 |
| PubMedID: 19493341 |
| Title : Analysis of the distribution of functionally relevant rare codons - Widmann_2008_BMC.Genomics_9_207 |
| Author(s) : Widmann M , Clairo M , Dippon J , Pleiss J |
| Ref : BMC Genomics , 9 :207 , 2008 |
| Abstract : |
| PubMedSearch : Widmann_2008_BMC.Genomics_9_207 |
| PubMedID: 18457591 |
| Title : Rational design of a new one-step purification strategy for Candida antarctica lipase B by ion-exchange chromatography - Trodler_2008_J.Chromatogr.A_1179_161 |
| Author(s) : Trodler P , Nieveler J , Rusnak M , Schmid RD , Pleiss J |
| Ref : Journal of Chromatography A , 1179 :161 , 2008 |
| Abstract : |
| PubMedSearch : Trodler_2008_J.Chromatogr.A_1179_161 |
| PubMedID: 18154980 |
| Title : Modeling structure and flexibility of Candida antarctica lipase B in organic solvents - Trodler_2008_BMC.Struct.Biol_8_9 |
| Author(s) : Trodler P , Pleiss J |
| Ref : BMC Struct Biol , 8 :9 , 2008 |
| Abstract : |
| PubMedSearch : Trodler_2008_BMC.Struct.Biol_8_9 |
| PubMedID: 18254946 |
| Gene_locus related to this paper: canar-LipB |
| Title : Biochemical profiling in silico--predicting substrate specificities of large enzyme families - Tyagi_2006_J.Biotechnol_124_108 |
| Author(s) : Tyagi S , Pleiss J |
| Ref : J Biotechnol , 124 :108 , 2006 |
| Abstract : |
| PubMedSearch : Tyagi_2006_J.Biotechnol_124_108 |
| PubMedID: 16519956 |
| Title : DWARF--a data warehouse system for analyzing protein families - Fischer_2006_BMC.Bioinformatics_7_495 |
| Author(s) : Fischer M , Thai QK , Grieb M , Pleiss J |
| Ref : BMC Bioinformatics , 7 :495 , 2006 |
| Abstract : |
| PubMedSearch : Fischer_2006_BMC.Bioinformatics_7_495 |
| PubMedID: 17094801 |
| Title : How to find soluble proteins: a comprehensive analysis of alpha\/beta hydrolases for recombinant expression in E. coli - Koschorreck_2005_BMC.Genomics_6_49 |
| Author(s) : Koschorreck M , Fischer M , Barth S , Pleiss J |
| Ref : BMC Genomics , 6 :49 , 2005 |
| Abstract : |
| PubMedSearch : Koschorreck_2005_BMC.Genomics_6_49 |
| PubMedID: 15804363 |
| Title : The database of epoxide hydrolases and haloalkane dehalogenases: one structure, many functions - Barth_2004_Bioinformatics_20_2845 |
| Author(s) : Barth S , Fischer M , Schmid RD , Pleiss J |
| Ref : Bioinformatics , 20 :2845 , 2004 |
| Abstract : |
| PubMedSearch : Barth_2004_Bioinformatics_20_2845 |
| PubMedID: 15117755 |
| Title : Sequence and structure of epoxide hydrolases: a systematic analysis - Barth_2004_Proteins_55_846 |
| Author(s) : Barth S , Fischer M , Schmid RD , Pleiss J |
| Ref : Proteins , 55 :846 , 2004 |
| Abstract : |
| PubMedSearch : Barth_2004_Proteins_55_846 |
| PubMedID: 15146483 |
| Title : Structure and dynamics of Candida rugosa lipase: the role of organic solvent - Tejo_2004_J.Mol.Model_10_358 |
| Author(s) : Tejo BA , Salleh AB , Pleiss J |
| Ref : J Mol Model , 10 :358 , 2004 |
| Abstract : |
| PubMedSearch : Tejo_2004_J.Mol.Model_10_358 |
| PubMedID: 15597204 |
| Title : A molecular mechanism of enantiorecognition of tertiary alcohols by carboxylesterases - Henke_2003_Chembiochem_4_485 |
| Author(s) : Henke E , Bornscheuer UT , Schmid RD , Pleiss J |
| Ref : Chembiochem , 4 :485 , 2003 |
| Abstract : |
| PubMedSearch : Henke_2003_Chembiochem_4_485 |
| PubMedID: 12794858 |
| Title : Blocking the tunnel: engineering of Candida rugosa lipase mutants with short chain length specificity - Schmitt_2002_Protein.Eng_15_595 |
| Author(s) : Schmitt J , Brocca S , Schmid RD , Pleiss J |
| Ref : Protein Engineering , 15 :595 , 2002 |
| Abstract : |
| PubMedSearch : Schmitt_2002_Protein.Eng_15_595 |
| PubMedID: 12200542 |
| Title : Activity of lipases and esterases towards tertiary alcohols: insights into structure-function relationships - |
| Author(s) : Henke E , Pleiss J , Bornscheuer UT |
| Ref : Angew Chem Int Ed Engl , 41 :3211 , 2002 |
| PubMedID: 12207392 |
| Title : A model of the pressure dependence of the enantioselectivity of Candida rugosalipase towards (+\/-)-menthol - Kahlow_2001_Protein.Sci_10_1942 |
| Author(s) : Kahlow UH , Schmid RD , Pleiss J |
| Ref : Protein Science , 10 :1942 , 2001 |
| Abstract : |
| PubMedSearch : Kahlow_2001_Protein.Sci_10_1942 |
| PubMedID: 11567085 |
| Gene_locus related to this paper: canru-1lipa |
| Title : Probing the acyl binding site of acetylcholinesterase by protein engineering - Pleiss_1999_J.Mol.Catal.B.Enzym_6_287 |
| Author(s) : Pleiss J , Mionetto N , Schmid RD |
| Ref : J Mol Catal B Enzym , 6 :287 , 1999 |
| Abstract : |
| PubMedSearch : Pleiss_1999_J.Mol.Catal.B.Enzym_6_287 |
| PubMedID: |
| Title : Anatomy of lipase binding sites: the scissile fatty acid binding site - Pleiss_1998_Chem.Phys.Lipids_93_67 |
| Author(s) : Pleiss J , Fischer M , Schmid RD |
| Ref : Chemistry & Physic of Lipids , 93 :67 , 1998 |
| Abstract : |
| PubMedSearch : Pleiss_1998_Chem.Phys.Lipids_93_67 |
| PubMedID: 9720251 |