arath-MES10

 
Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Methylesterase 10 AtMES10 MES10 T20E23.40 AT3g50440

Comment
Other strains: Arabidopsis thaliana (Mouse-ear cress) Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress)


Relationship
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



2 Genbank : AL133363, GL348717
2 UniProt : Q8S9K8, D7LTF1
1 Ncbi-nid : 6561980
1 Ncbi-pid : 6561984
2 UniProtTrembl : Q8S9K8, D7LTF1
2 Interpro : Q8S9K8, D7LTF1
2 Prodom : Q8S9K8, D7LTF1
2 Pfam : Q8S9K8, D7LTF1
2 PIRSF : Q8S9K8, D7LTF1
2 SUPERFAM : Q8S9K8, D7LTF1
2 QuickSwissBlast : Q8S9K8, D7LTF1
1 Tair database : At3g50440
 
Sequence
Graphical view for this peptide sequence: arath-MES10
Colored MSA for Hydroxynitrile_lyase (raw)
MQQQQLHHFVFVHGSCHGAWCWFKLAAKLKLDGHRVTAIDLGGSGVDTRQ
LHEVRLVSAYLEPLMSFMESLPENEKVVLVGHSYGGIGTSLAMERFPTKV
SVGIFLSAYMPHHDSPPAVLIQEYFTRLPEGFAMDCEFTFEEGLEHPPSS
VLFGTSFLKEKAYSNCQLEDLELAMALMKPSWLYTKEMGGEDLITKERYG
SGKRVFIVCEGDNVVPEEIQKWMISNYEPHEVKRIEEAGHMAMLTKPHEL
SQLLQEIAAKYN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MQQQQLHHFVFVHGSCHGAWCWFKLAAKLKLDGHRVTAIDLGGSGVDTRQ
LHEVRLVSAYLEPLMSFMESLPENEKVVLVGHSYGGIGTSLAMERFPTKV
SVGIFLSAYMPHHDSPPAVLIQEYFTRLPEGFAMDCEFTFEEGLEHPPSS
VLFGTSFLKEKAYSNCQLEDLELAMALMKPSWLYTKEMGGEDLITKERYG
SGKRVFIVCEGDNVVPEEIQKWMISNYEPHEVKRIEEAGHMAMLTKPHEL
SQLLQEIAAKYN

Graphical view for this nucleotide DNA sequence (999 bp): arath-MES10



Reference
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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