Gene_locus Report for: capan-a0a1u8ftr2

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > lamiids: N E > Solanales: N E > Solanaceae: N E > Solanoideae: N E > Capsiceae: N E > Capsicum: N E > Capsicum annuum: N E

Bodyguard : capan-a0a1u8g161Capsicum annuum (Bell pepper, Peruvian pepper, Bonnet pepper); Capsicum baccatum; Capsicum chinense (Scotch bonnet) Uncharacterized protein.
Plant_carboxylesterase : capan-PepESTCapsicum annuum (and Capsicum chinense (Scotch bonnet) (Bonnet pepper)) (Bell pepper) pepper esterase (PepEST) mRNA, complete cds, capan-a0a1u8flz5Capsicum annuum (Capsicum pepper); Capsicum baccatum (Peruvian pepper). Abhydrolase_3 domain-containing protein, capan-a0a2g2y016Capsicum annuum (Capsicum pepper); Capsicum baccatum (Peruvian pepper). Abhydrolase_3 domain-containing protein.
Plant_lipase_EDS1-like : capan-a0a1u8hd13Capsicum annuum (Capsicum pepper); Capsicum baccatum (Peruvian pepper). Uncharacterized protein.
Plant_phospholipase : capan-a5yw95 Capsicum annuum (Capsicum pepper) phospholipase A1, CaPLA1.
Triacylglycerol-lipase-OBL1-like : capan-a0a1u8f879Capsicum annuum (Capsicum pepper). uncharacterized protein LOC107851852, capan-a0a1u8fpc9Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein, capan-a0a1u8fqs3Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein, capan-a0a1u8ft99Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein, capan-a0a1u8g8s6Capsicum annuum (Capsicum pepper). uncharacterized protein LOC107865860, capan-a0a2g2xtt0Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein, capan-a0a1u8eu02Capsicum annuum (Capsicum pepper). Lipase_3 domain-containing protein.
UCP031088 : capan-a0a1u8fuf5Capsicum annuum (Bell pepper); Capsicum baccatum (Peruvian pepper); Capsicum chinense (Scotch bonnet) (Bonnet pepper). uncharacterized protein LOC107861918 isoform X1, capan-a0a1u8gmz3Capsicum annuum (Bell pepper); Capsicum baccatum (Peruvian pepper); Capsicum chinense (Scotch bonnet) (Bonnet pepper). uncharacterized protein LOC107870576 isoform X1

Title: Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
Qin C, Yu C, Shen Y, Fang X, Chen L, Min J, Cheng J, Zhao S, Xu M and Zhang Z <58 more author(s)> Qin C, Yu C, Shen Y, Fang X, Chen L, Min J, Cheng J, Zhao S, Xu M, Luo Y, Yang Y, Wu Z, Mao L, Wu H, Ling-Hu C, Zhou H, Lin H, Gonzalez-Morales S, Trejo-Saavedra DL, Tian H, Tang X, Zhao M, Huang Z, Zhou A, Yao X, Cui J, Li W, Chen Z, Feng Y, Niu Y, Bi S, Yang X, Cai H, Luo X, Montes-Hernandez S, Leyva-Gonzalez MA, Xiong Z, He X, Bai L, Tan S, Liu D, Liu J, Zhang S, Chen M, Zhang L, Zhang Y, Liao W, Wang M, Lv X, Wen B, Liu H, Luan H, Yang S, Wang X, Xu J, Li X, Li S, Wang J, Palloix A, Bosland PW, Li Y, Krogh A, Rivera-Bustamante RF, Herrera-Estrella L, Yin Y, Yu J, Hu K, Zhang Z (- 58)
Ref: Proc Natl Acad Sci U S A, 111:5135, 2014 : PubMed
Abstract


ESTHER: Qin_2014_Proc.Natl.Acad.Sci.U.S.A_111_5135
PubMedSearch: Qin 2014 Proc.Natl.Acad.Sci.U.S.A 111 5135
PubMedID: 24591624
Gene_locus related to this paper: capch-q75qh4, capan-a0a1u8fuf5, capan-a0a1u8gmz3, capan-a0a1u8f879, capan-a0a1u8ftr2, capan-a0a1u8g8s6

Abstract

As an economic crop, pepper satisfies people's spicy taste and has medicinal uses worldwide. To gain a better understanding of Capsicum evolution, domestication, and specialization, we present here the genome sequence of the cultivated pepper Zunla-1 (C. annuum L.) and its wild progenitor Chiltepin (C. annuum var. glabriusculum). We estimate that the pepper genome expanded approximately 0.3 Mya (with respect to the genome of other Solanaceae) by a rapid amplification of retrotransposons elements, resulting in a genome comprised of approximately 81% repetitive sequences. Approximately 79% of 3.48-Gb scaffolds containing 34,476 protein-coding genes were anchored to chromosomes by a high-density genetic map. Comparison of cultivated and wild pepper genomes with 20 resequencing accessions revealed molecular footprints of artificial selection, providing us with a list of candidate domestication genes. We also found that dosage compensation effect of tandem duplication genes probably contributed to the pungent diversification in pepper. The Capsicum reference genome provides crucial information for the study of not only the evolution of the pepper genome but also, the Solanaceae family, and it will facilitate the establishment of more effective pepper breeding programs.