oryla-d2x2i4

 
Oryzias latipes (Medaka fish) (Japanese ricefish) Neuroligin 3a

Relationship
Family Neuroligin
Block C
Oryzias latipes position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Euteleosteomorpha: N E > Neoteleostei: N E > Eurypterygia: N E > Ctenosquamata: N E > Acanthomorphata: N E > Euacanthomorphacea: N E > Percomorphaceae: N E > Ovalentaria: N E > Atherinomorphae: N E > Beloniformes: N E > Adrianichthyoidei: N E > Adrianichthyidae: N E > Oryziinae: N E > Oryzias: N E > Oryzias latipes: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : GQ489215
3 UniProt : D2X2I4, H2LPY2, H2LPX6
3 UniProtTrembl : D2X2I4, H2LPY2, H2LPX6
3 Interpro : D2X2I4, H2LPY2, H2LPX6
3 Prodom : D2X2I4, H2LPY2, H2LPX6
3 Pfam : D2X2I4, H2LPY2, H2LPX6
3 PIRSF : D2X2I4, H2LPY2, H2LPX6
3 SUPERFAM : D2X2I4, H2LPY2, H2LPX6
3 QuickSwissBlast : D2X2I4, H2LPY2, H2LPX6
 
Sequence
Graphical view for this peptide sequence: oryla-d2x2i4
Colored MSA for Neuroligin (raw)
MWFSPRRNRFPSQNCHSAGKCTGFSLSLWVLSVCWCLAAVKGQNYYPTVN
TQYGKLRGVRVPLPSEILGPVDQYLGVPYAAPPVGEKRFMPPEPPSSWSG
IKNTTHFAPVCPQNIHNAVPEIMMPIWFTFNLDIVTTYIQDQHEDCLYLN
IYVPTEDVKRISKECARKPNKKICRKGGVHAKKQGEELSENNGDEDEDIR
DTGAKPVMVYIHGGSYMEGTGNMIDGSVLASYGNVIVITLNYRVGVLGFL
STGDQAAKGNYGLLDQIQALRWISENIGFFGGDSNRITVFGSGIGASCVS
LLTLSHHSEGLFHRAIIQSGSALSSWAVNYQPVKYTRLLAEKVGCNVLDT
SDMVDCLRKKSSRELVEQDIQPARYHVAFGPVIDGDVIPDDPEILMEQGE
FLNYDIMLGVNQGEGLRFVENVVDSEDGVSGNDFDFSVSDFVDSLYGYPE
GKDTLRETIKFMYTDWADRDNPETRRKTLVALFTDHQWVEPSVVTADLHA
RYGSPTYFYAFYHHCQSLMKPAWSDAAHGDEVPYVFGIPMIGPTDLFPCN
FSKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTKANRFEEVAWSK
YNPQDQLYLHIGLKPRVRDHYRATKVAFWKHLVPHLYNLHDMFHYTSTTT
KVPPPETTQNTLSTKRPFNTKHPPMSPAYNSEDKSSWNDNEEAGPIVVEN
PRDYSTELSVTIAVGASLLFLNVLAFAALYYRKDKRRQDPSHGQPSPQRQ
TTSNDIGHHAPEEEIMTLQMNQTHHECEAGNSNEGALRLTSLPDYTLTLR
RSPDDIPLMTPNTITMIPNSLVGMPNLHPYNTFTTGFNSTGLPHSHSTTR
V
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MWFSPRRNRFPSQNCHSAGKCTGFSLSLWVLSVCWCLAAVKGQNYYPTVN
TQYGKLRGVRVPLPSEILGPVDQYLGVPYAAPPVGEKRFMPPEPPSSWSG
IKNTTHFAPVCPQNIHNAVPEIMMPIWFTFNLDIVTTYIQDQHEDCLYLN
IYVPTEDVKRISKECARKPNKKICRKGGVHAKKQGEELSENNGDEDEDIR
DTGAKPVMVYIHGGSYMEGTGNMIDGSVLASYGNVIVITLNYRVGVLGFL
STGDQAAKGNYGLLDQIQALRWISENIGFFGGDSNRITVFGSGIGASCVS
LLTLSHHSEGLFHRAIIQSGSALSSWAVNYQPVKYTRLLAEKVGCNVLDT
SDMVDCLRKKSSRELVEQDIQPARYHVAFGPVIDGDVIPDDPEILMEQGE
FLNYDIMLGVNQGEGLRFVENVVDSEDGVSGNDFDFSVSDFVDSLYGYPE
GKDTLRETIKFMYTDWADRDNPETRRKTLVALFTDHQWVEPSVVTADLHA
RYGSPTYFYAFYHHCQSLMKPAWSDAAHGDEVPYVFGIPMIGPTDLFPCN
FSKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTKANRFEEVAWSK
YNPQDQLYLHIGLKPRVRDHYRATKVAFWKHLVPHLYNLHDMFHYTSTTT
KVPPPETTQNTLSTKRPFNTKHPPMSPAYNSEDKSSWNDNEEAGPIVVEN
PRDYSTELSVTIAVGASLLFLNVLAFAALYYRKDKRRQDPSHGQPSPQRQ
TTSNDIGHHAPEEEIMTLQMNQTHHECEAGNSNEGALRLTSLPDYTLTLR
RSPDDIPLMTPNTITMIPNSLVGMPNLHPYNTFTTGFNSTGLPHSHSTTR
V

no DNA




References
    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            

    Title: The medaka draft genome and insights into vertebrate genome evolution
    Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K and Kohara Y <28 more author(s)>
    Ref: Nature, 447:714, 2007 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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