oryla-nlgn2

 
Oryzias latipes (Medaka fish) (Japanese ricefish) Neuroligin 2b

Relationship
Family Neuroligin
Block C
Oryzias latipes position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Euteleosteomorpha: N E > Neoteleostei: N E > Eurypterygia: N E > Ctenosquamata: N E > Acanthomorphata: N E > Euacanthomorphacea: N E > Percomorphaceae: N E > Ovalentaria: N E > Atherinomorphae: N E > Beloniformes: N E > Adrianichthyoidei: N E > Adrianichthyidae: N E > Oryziinae: N E > Oryzias: N E > Oryzias latipes: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : GQ489214
3 UniProt : D2X2I3, H2M330, H2M333
3 UniProtTrembl : D2X2I3, H2M330, H2M333
3 Interpro : D2X2I3, H2M330, H2M333
3 Prodom : D2X2I3, H2M330, H2M333
3 Pfam : D2X2I3, H2M330, H2M333
3 PIRSF : D2X2I3, H2M330, H2M333
3 SUPERFAM : D2X2I3, H2M330, H2M333
3 QuickSwissBlast : D2X2I3, H2M330, H2M333
 
Sequence
Graphical view for this peptide sequence: oryla-nlgn2
Colored MSA for Neuroligin (raw)
MFLLFHGTSHQGCGGRRPNMSRQVAKPCLLWLLGLVLHLTLSSSQRVDLK
YPIVSTVYGKVRGIRKELNNEILGPVEQFLGVPYATAPVGERRFQPPEAP
GSWQEIRNATQFAPVCPQNVHGVLPEIMLPVWFTDNLDAAATYVQNQSED
CLYLNIYVPTEDDVRDRRKKPVMLFIHGGSYMEGSGNMFDGSVLSAYGNV
IVVTMNYRLGVLGFLSTGDQSAKGNYGLLDQIQALRWLNENIGHFGGDPE
RITIFGSGAGAACVNLLILSHHSEGLFQRAIAQSGSAISSWSVNYRPLMY
TKILAKKVGCSFGDMADLVDCLRRKSFRELVDQDIQPARYHIAFGPVVDG
DVVPDDPEILMQQGEFLNYDILLGVNQGEGLKFVDDSEGEDGISAASFDY
TISNFVDNLYGYPDGKDILRETIKFMYTDWADRDNSDMRRKTLLALFTDH
QWVAPAVATAKLHAEFQSPVYFYTFHHHCQTEARPDWADAAHGDEIPYVF
GIPMVGATDLFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNLPVPQDTTFI
HTKPNRFEEVIWTKFSSKDKQYLHIGLKPRVRDNYRANKVAFWLELVPHL
HSLHEEIISSITTRLPPNNRRKPSHPGTRSTRHPVVSTYPPDSDPDVSER
PRFSPFPSETRDYSTELSVTVAVGASLLFLNVLAFAALYYKRDKRHELMQ
RRHRRLSPHRSTTAGMGVGMGVVGAPPHNDLALSQEEELMSLQMKQQRVE
LEHGTPLPSRGVHGDLETLRCPPDYTLALRRAPEDVPLMTANTITMIPST
ISSMQPLHPFNTYPPIPTPSSTPVPSHSNNALPHQHSTTRV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MFLLFHGTSHQGCGGRRPNMSRQVAKPCLLWLLGLVLHLTLSSSQRVDLK
YPIVSTVYGKVRGIRKELNNEILGPVEQFLGVPYATAPVGERRFQPPEAP
GSWQEIRNATQFAPVCPQNVHGVLPEIMLPVWFTDNLDAAATYVQNQSED
CLYLNIYVPTEDDVRDRRKKPVMLFIHGGSYMEGSGNMFDGSVLSAYGNV
IVVTMNYRLGVLGFLSTGDQSAKGNYGLLDQIQALRWLNENIGHFGGDPE
RITIFGSGAGAACVNLLILSHHSEGLFQRAIAQSGSAISSWSVNYRPLMY
TKILAKKVGCSFGDMADLVDCLRRKSFRELVDQDIQPARYHIAFGPVVDG
DVVPDDPEILMQQGEFLNYDILLGVNQGEGLKFVDDSEGEDGISAASFDY
TISNFVDNLYGYPDGKDILRETIKFMYTDWADRDNSDMRRKTLLALFTDH
QWVAPAVATAKLHAEFQSPVYFYTFHHHCQTEARPDWADAAHGDEIPYVF
GIPMVGATDLFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNLPVPQDTTFI
HTKPNRFEEVIWTKFSSKDKQYLHIGLKPRVRDNYRANKVAFWLELVPHL
HSLHEEIISSITTRLPPNNRRKPSHPGTRSTRHPVVSTYPPDSDPDVSER
PRFSPFPSETRDYSTELSVTVAVGASLLFLNVLAFAALYYKRDKRHELMQ
RRHRRLSPHRSTTAGMGVGMGVVGAPPHNDLALSQEEELMSLQMKQQRVE
LEHGTPLPSRGVHGDLETLRCPPDYTLALRRAPEDVPLMTANTITMIPST
ISSMQPLHPFNTYPPIPTPSSTPVPSHSNNALPHQHSTTRV

no DNA




References
    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            

    Title: The medaka draft genome and insights into vertebrate genome evolution
    Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, Ahsan B, Yamada T, Nagayasu Y, Doi K and Kohara Y <28 more author(s)>
    Ref: Nature, 447:714, 2007 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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