Yamashita A

References (21)

Title : Phosphorylation and subcellular localization of human phospholipase A1, DDHD1\/PA-PLA1 - Yamashita_2022_Methods.Enzymol_675_235
Author(s) : Yamashita A , Matsumoto N , Nemoto-Sasaki Y , Oka S , Arai S , Wada I
Ref : Methods Enzymol , 675 :235 , 2022
Abstract :
PubMedSearch : Yamashita_2022_Methods.Enzymol_675_235
PubMedID: 36220272

Title : Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs - Okubo_2012_Microbes.Environ_27_306
Author(s) : Okubo T , Tsukui T , Maita H , Okamoto S , Oshima K , Fujisawa T , Saito A , Futamata H , Hattori R , Shimomura Y , Haruta S , Morimoto S , Wang Y , Sakai Y , Hattori M , Aizawa S , Nagashima KV , Masuda S , Hattori T , Yamashita A , Bao Z , Hayatsu M , Kajiya-Kanegae H , Yoshinaga I , Sakamoto K , Toyota K , Nakao M , Kohara M , Anda M , Niwa R , Jung-Hwan P , Sameshima-Saito R , Tokuda S , Yamamoto S , Yokoyama T , Akutsu T , Nakamura Y , Nakahira-Yanaka Y , Takada Hoshino Y , Hirakawa H , Mitsui H , Terasawa K , Itakura M , Sato S , Ikeda-Ohtsubo W , Sakakura N , Kaminuma E , Minamisawa K
Ref : Microbes Environ , 27 :306 , 2012
Abstract :
PubMedSearch : Okubo_2012_Microbes.Environ_27_306
PubMedID: 22452844
Gene_locus related to this paper: 9brad-i0g2u8 , 9brad-i0gf89 , braja-pcaD , 9brad-i0fzh8 , 9brad-i0gfv2 , 9brad-i0g2y4

Title : Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu - Futagami_2011_Eukaryot.Cell_10_1586
Author(s) : Futagami T , Mori K , Yamashita A , Wada S , Kajiwara Y , Takashita H , Omori T , Takegawa K , Tashiro K , Kuhara S , Goto M
Ref : Eukaryot Cell , 10 :1586 , 2011
Abstract :
PubMedSearch : Futagami_2011_Eukaryot.Cell_10_1586
PubMedID: 22045919
Gene_locus related to this paper: aspaw-AXE1 , aspkw-g7x761 , aspkw-g7xcc9 , aspkw-g7xum1 , aspkw-g7xy77 , aspna-g3yal2 , aspnc-a2qe77 , aspnc-a2qf54 , aspnc-a2qfe9 , aspnc-a2qh76 , aspnc-a2qhe2 , aspnc-a2qi32 , aspnc-a2ql89 , aspnc-a2ql90 , aspnc-a2qla0 , aspnc-a2qmk5 , aspnc-a2qn56 , aspnc-a2qs22 , aspnc-a2qti9 , aspnc-a2qtz0 , aspnc-a2quc1 , aspnc-a2qx92 , aspnc-a2qyf0 , aspnc-a2qys7 , aspnc-a2qz72 , aspnc-a2qzn6 , aspnc-a2qzr0 , aspnc-a2qzx4 , aspnc-a2r0p4 , aspnc-a2r1r5 , aspnc-a2r2i5 , aspnc-a2r5r4 , aspnc-a2r8r3 , aspnc-a2r8z3 , aspnc-a2r273 , aspnc-a2r496 , aspnc-a2r502 , aspnc-a5abe5 , aspnc-a5abe8 , aspnc-a5abh9 , aspnc-a5abk1 , aspnc-cuti2 , aspng-a2qst4 , aspni-EstA , aspkw-g7y0v7 , aspnc-a2qt47 , aspkw-g7xj51 , aspkw-g7xru4 , aspkw-g7xr60 , aspna-g3y5a6 , 9euro-a0a146f3d2 , aspkw-g7xq95 , aspkw-g7xzf8 , asptc-a0a1l9nby7 , aspkw-g7xen3

Title : Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin - Ihara_2008_Invert.Neurosci_8_71
Author(s) : Ihara M , Okajima T , Yamashita A , Oda T , Hirata K , Nishiwaki H , Morimoto T , Akamatsu M , Ashikawa Y , Kuroda S , Mega R , Kuramitsu S , Sattelle DB , Matsuda K
Ref : Invert Neurosci , 8 :71 , 2008
Abstract :
PubMedSearch : Ihara_2008_Invert.Neurosci_8_71
PubMedID: 18338186

Title : Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350 - Ohnishi_2008_J.Bacteriol_190_4050
Author(s) : Ohnishi Y , Ishikawa J , Hara H , Suzuki H , Ikenoya M , Ikeda H , Yamashita A , Hattori M , Horinouchi S
Ref : Journal of Bacteriology , 190 :4050 , 2008
Abstract :
PubMedSearch : Ohnishi_2008_J.Bacteriol_190_4050
PubMedID: 18375553
Gene_locus related to this paper: strgg-b1vku3 , strgg-b1vl52 , strgg-b1vlg6 , strgg-b1vm48 , strgg-b1vmn5 , strgg-b1vms2 , strgg-b1vmu0 , strgg-b1vn62 , strgg-b1vn76 , strgg-b1vnq8 , strgg-b1vp88 , strgg-b1vpj5.1 , strgg-b1vpj5.2 , strgg-b1vpn6 , strgg-b1vr06 , strgg-b1vr99 , strgg-b1vs60 , strgg-b1vsh1 , strgg-b1vsw0 , strgg-b1vt13 , strgg-b1vtd3 , strgg-b1vu88 , strgg-b1vw73 , strgg-b1vwl8 , strgg-b1vwx6 , strgg-b1vyg6 , strgg-b1vyh0 , strgg-b1vyj0 , strgg-b1vz78 , strgg-b1vzt4 , strgg-b1vzw6 , strgg-b1w1l1 , strgg-b1w1m6 , strgg-b1w2r7 , strgg-b1w3q4 , strgg-b1w4m3 , strgg-b1w5d5 , strgg-b1w5v0 , strgg-b1w021 , strgg-b1w150 , strgg-b1w151 , strgg-b1w254 , strgg-b1w1b1 , strgg-b1vkv5 , strgg-b1vqn4 , strgg-b1vv39

Title : Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen - Goto_2008_DNA.Res_15_39
Author(s) : Goto T , Yamashita A , Hirakawa H , Matsutani M , Todo K , Ohshima K , Toh H , Miyamoto K , Kuhara S , Hattori M , Shimizu T , Akimoto S
Ref : DNA Research , 15 :39 , 2008
Abstract :
PubMedSearch : Goto_2008_DNA.Res_15_39
PubMedID: 18263572

Title : Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of whole-genome PCR scanning and fosmid mapping - Ogura_2008_J.Bacteriol_190_6948
Author(s) : Ogura Y , Abe H , Katsura K , Kurokawa K , Asadulghani M , Iguchi A , Ooka T , Nakayama K , Yamashita A , Hattori M , Tobe T , Hayashi T
Ref : Journal of Bacteriology , 190 :6948 , 2008
Abstract :
PubMedSearch : Ogura_2008_J.Bacteriol_190_6948
PubMedID: 18757547
Gene_locus related to this paper: ecoli-Z1930

Title : The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution - Nakayama_2008_DNA.Res_15_185
Author(s) : Nakayama K , Yamashita A , Kurokawa K , Morimoto T , Ogawa M , Fukuhara M , Urakami H , Ohnishi M , Uchiyama I , Ogura Y , Ooka T , Oshima K , Tamura A , Hattori M , Hayashi T
Ref : DNA Research , 15 :185 , 2008
Abstract :
PubMedSearch : Nakayama_2008_DNA.Res_15_185
PubMedID: 18508905
Gene_locus related to this paper: oriti-b3cqy7

Title : Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis - Naito_2008_DNA.Res_15_215
Author(s) : Naito M , Hirakawa H , Yamashita A , Ohara N , Shoji M , Yukitake H , Nakayama K , Toh H , Yoshimura F , Kuhara S , Hattori M , Hayashi T
Ref : DNA Research , 15 :215 , 2008
Abstract :
PubMedSearch : Naito_2008_DNA.Res_15_215
PubMedID: 18524787
Gene_locus related to this paper: porgi-DPP , porgi-q7mub3 , porgi-q7muw6 , porgi-q7mwa7 , porgi-q7mx03

Title : Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host - Toh_2006_Genome.Res_16_149
Author(s) : Toh H , Weiss BL , Perkin SA , Yamashita A , Oshima K , Hattori M , Aksoy S
Ref : Genome Res , 16 :149 , 2006
Abstract :
PubMedSearch : Toh_2006_Genome.Res_16_149
PubMedID: 16365377
Gene_locus related to this paper: sodgm-q2nqh6 , sodgm-q2nqt2 , sodgm-q2nss6 , sodgm-q2nt34 , sodgm-q2nth7 , sodgm-q2nue4 , sodgm-q2nvf1 , sodgm-q2nwd0

Title : Genome sequence of the cat pathogen, Chlamydophila felis - Azuma_2006_DNA.Res_13_15
Author(s) : Azuma Y , Hirakawa H , Yamashita A , Cai Y , Rahman MA , Suzuki H , Mitaku S , Toh H , Goto S , Murakami T , Sugi K , Hayashi H , Fukushi H , Hattori M , Kuhara S , Shirai M
Ref : DNA Research , 13 :15 , 2006
Abstract :
PubMedSearch : Azuma_2006_DNA.Res_13_15
PubMedID: 16766509
Gene_locus related to this paper: chlff-q253e0 , chlff-q254l8

Title : Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection - Kuroda_2005_Proc.Natl.Acad.Sci.U.S.A_102_13272
Author(s) : Kuroda M , Yamashita A , Hirakawa H , Kumano M , Morikawa K , Higashide M , Maruyama A , Inose Y , Matoba K , Toh H , Kuhara S , Hattori M , Ohta T
Ref : Proc Natl Acad Sci U S A , 102 :13272 , 2005
Abstract :
PubMedSearch : Kuroda_2005_Proc.Natl.Acad.Sci.U.S.A_102_13272
PubMedID: 16135568
Gene_locus related to this paper: stas1-q4a0b8 , stas1-q4a0z3 , stas1-q4a018 , stas1-q4a076 , stas1-q4a169 , stas1-q49uw5 , stas1-q49vf8 , stas1-q49vg1 , stas1-q49vk0 , stas1-q49w07 , stas1-q49w20 , stas1-q49we3 , stas1-q49wg7 , stas1-q49ws3 , stas1-q49x95 , stas1-q49xp4 , stas1-q49yj4 , stas1-q49zd4 , stas1-q49zs7

Title : The complete genomic sequence of Nocardia farcinica IFM 10152 - Ishikawa_2004_Proc.Natl.Acad.Sci.U.S.A_101_14925
Author(s) : Ishikawa J , Yamashita A , Mikami Y , Hoshino Y , Kurita H , Hotta K , Shiba T , Hattori M
Ref : Proc Natl Acad Sci U S A , 101 :14925 , 2004
Abstract :
PubMedSearch : Ishikawa_2004_Proc.Natl.Acad.Sci.U.S.A_101_14925
PubMedID: 15466710
Gene_locus related to this paper: 9arch-q5nw20 , nocfa-metx , nocfa-q5ymb5 , nocfa-q5yml0 , nocfa-q5ymz1 , nocfa-q5yn12 , nocfa-q5yn81 , nocfa-q5yna6 , nocfa-q5ynd1 , nocfa-q5yne7 , nocfa-q5ynm0 , nocfa-q5ynw9 , nocfa-q5ynx0 , nocfa-q5yp07 , nocfa-q5yp18 , nocfa-q5yp33 , nocfa-q5yp46 , nocfa-q5yp51 , nocfa-q5ypg5 , nocfa-q5yph7 , nocfa-q5ypm0 , nocfa-q5ypu9 , nocfa-q5ypw3 , nocfa-q5yqi7 , nocfa-q5yql3 , nocfa-q5yqp8 , nocfa-q5yqw8 , nocfa-q5yqy4 , nocfa-q5yr00 , nocfa-q5yr19 , nocfa-q5yrc7 , nocfa-q5yrg2 , nocfa-q5yrn9 , nocfa-q5yrp2 , nocfa-q5yrp3 , nocfa-q5yrq8 , nocfa-q5yrt6 , nocfa-q5yrv3 , nocfa-q5yrz4 , nocfa-q5ys96 , nocfa-q5ys98 , nocfa-q5ysa6 , nocfa-q5ysq0 , nocfa-q5yt17 , nocfa-q5ytb0 , nocfa-q5ytg1 , nocfa-q5ytn3 , nocfa-q5ytr2 , nocfa-q5ytw9 , nocfa-q5ytz8 , nocfa-q5yua9 , nocfa-q5yub8 , nocfa-q5yuk6 , nocfa-q5yum4 , nocfa-q5yun2 , nocfa-q5yun5 , nocfa-q5yun7 , nocfa-q5yuq2 , nocfa-q5yur6 , nocfa-q5yus3 , nocfa-q5yus4 , nocfa-q5yv08 , nocfa-q5yv27 , nocfa-q5yvb8 , nocfa-q5yvi0 , nocfa-q5yvk3 , nocfa-q5yvr2 , nocfa-q5yvw8 , nocfa-q5yvz9 , nocfa-q5yw34 , nocfa-q5yw53 , nocfa-q5ywe0 , nocfa-q5ywh1 , nocfa-q5ywp2 , nocfa-q5ywt3 , nocfa-q5yx25 , nocfa-q5yx42 , nocfa-q5yx67 , nocfa-q5yxc9 , nocfa-q5yxd4 , nocfa-q5yxg3 , nocfa-q5yxx4 , nocfa-q5yy59 , nocfa-q5yyb5 , nocfa-q5yz80 , nocfa-q5yz86 , nocfa-q5yz89 , nocfa-q5yz97 , nocfa-q5yza2 , nocfa-q5yzd7 , nocfa-q5yzg2 , nocfa-q5yzh3 , nocfa-q5yzi0 , nocfa-q5yzq7 , nocfa-q5yzu6 , nocfa-q5z0b7 , nocfa-q5z0l3 , nocfa-q5z0s0 , nocfa-q5z0u1 , nocfa-q5z1b6 , nocfa-q5z1d9 , nocfa-q5z1g6 , nocfa-q5z1t3 , nocfa-q5z1t8 , nocfa-q5z1x5 , nocfa-q5z1x6 , nocfa-q5z1x7 , nocfa-q5z1x8 , nocfa-q5z2c2 , nocfa-q5z2d3 , nocfa-q5z2d5 , nocfa-q5z2e7 , nocfa-q5z2m6 , nocfa-q5z2s1 , nocfa-q5z2x4 , nocfa-q5z2x8 , nocfa-q5z2z7 , nocfa-q5z3c1 , nocfa-q5z3e1 , nocfa-q5z3g0 , nocfa-q5z3g3 , nocfa-q5z3g5 , nocfa-q5z3g6 , nocfa-q5z3g7 , nocfa-q5z3g8 , nocfa-q5z3q1 , nocfa-q5z3z4 , nocfa-q5z200 , nocfa-q5z339 , nocfa-q5ynw5 , nocfa-q5ynd9 , nocfa-q5yp20

Title : Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism - Ueda_2004_Nucleic.Acids.Res_32_4937
Author(s) : Ueda K , Yamashita A , Ishikawa J , Shimada M , Watsuji TO , Morimura K , Ikeda H , Hattori M , Beppu T
Ref : Nucleic Acids Research , 32 :4937 , 2004
Abstract :
PubMedSearch : Ueda_2004_Nucleic.Acids.Res_32_4937
PubMedID: 15383646
Gene_locus related to this paper: symth-metx , symth-q67kd5 , symth-q67kg6 , symth-q67kl6 , symth-q67km7 , symth-q67lu3 , symth-q67mi3 , symth-q67mk6 , symth-q67mr3 , symth-q67n56 , symth-q67nt3 , symth-q67pl6 , symth-q67qv2 , symth-q67r02 , symth-q67r99 , symth-q67ra1 , symth-q67ri0 , symth-q67rl1 , symth-q67ru9 , symth-q67s20 , symth-q67sr9 , symth-q67sv7 , symth-q67t46

Title : Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation - Kuwahara_2004_Proc.Natl.Acad.Sci.U.S.A_101_14919
Author(s) : Kuwahara T , Yamashita A , Hirakawa H , Nakayama H , Toh H , Okada N , Kuhara S , Hattori M , Hayashi T , Ohnishi Y
Ref : Proc Natl Acad Sci U S A , 101 :14919 , 2004
Abstract :
PubMedSearch : Kuwahara_2004_Proc.Natl.Acad.Sci.U.S.A_101_14919
PubMedID: 15466707
Gene_locus related to this paper: bacfn-q5lh43 , bacfr-q64mh3 , bacfr-q64n33 , bacfr-q64qs3 , bacfr-q64t24 , bacfr-q64uj8 , bacfr-q64vl4 , bacfr-q64vx6 , bacfr-q64wh2 , bacfr-q64xp9 , bacfr-q64yv4 , bacfr-q650j0

Title : Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution - Nakagawa_2003_Genome.Res_13_1042
Author(s) : Nakagawa I , Kurokawa K , Yamashita A , Nakata M , Tomiyasu Y , Okahashi N , Kawabata S , Yamazaki K , Shiba T , Yasunaga T , Hayashi H , Hattori M , Hamada S
Ref : Genome Res , 13 :1042 , 2003
Abstract :
PubMedSearch : Nakagawa_2003_Genome.Res_13_1042
PubMedID: 12799345
Gene_locus related to this paper: strpy-ESTA , strpy-PEPXP , strpy-SPY1308

Title : Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae - Makino_2003_Lancet_361_743
Author(s) : Makino K , Oshima K , Kurokawa K , Yokoyama K , Uda T , Tagomori K , Iijima Y , Najima M , Nakano M , Yamashita A , Kubota Y , Kimura S , Yasunaga T , Honda T , Shinagawa H , Hattori M , Iida T
Ref : Lancet , 361 :743 , 2003
Abstract :
PubMedSearch : Makino_2003_Lancet_361_743
PubMedID: 12620739
Gene_locus related to this paper: vibpa-PHAC , vibpa-VP0148 , vibpa-VP0409 , vibpa-VP0429 , vibpa-VP0626 , vibpa-VP0693 , vibpa-VP0837 , vibpa-VP0869 , vibpa-VP0930 , vibpa-VP1025 , vibpa-VP1181 , vibpa-VP1677 , vibpa-VP1678 , vibpa-VP2790 , vibpa-VP2974 , vibpa-VPA0054 , vibpa-VPA0070 , vibpa-VPA0081 , vibpa-VPA0167 , vibpa-VPA0468 , vibpa-VPA0859 , vibpa-VPA0997 , vibpa-VPA1061 , vibpa-VPA1249 , vibpa-VPA1467 , vibpa-VPA1496 , vibpa-VPA1595 , vibpa-y674 , vibpa-y969

Title : The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans - Sasaki_2002_Nucleic.Acids.Res_30_5293
Author(s) : Sasaki Y , Ishikawa J , Yamashita A , Oshima K , Kenri T , Furuya K , Yoshino C , Horino A , Shiba T , Sasaki T , Hattori M
Ref : Nucleic Acids Research , 30 :5293 , 2002
Abstract :
PubMedSearch : Sasaki_2002_Nucleic.Acids.Res_30_5293
PubMedID: 12466555
Gene_locus related to this paper: mycpe-MYPE3930 , mycpe-MYPE5460 , mycpe-MYPE8330 , mycpe-MYPE9300 , mycpe-q8eve6

Title : Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater - Shimizu_2002_Proc.Natl.Acad.Sci.U.S.A_99_996
Author(s) : Shimizu T , Ohtani K , Hirakawa H , Ohshima K , Yamashita A , Shiba T , Ogasawara N , Hattori M , Kuhara S , Hayashi H
Ref : Proc Natl Acad Sci U S A , 99 :996 , 2002
Abstract :
PubMedSearch : Shimizu_2002_Proc.Natl.Acad.Sci.U.S.A_99_996
PubMedID: 11792842
Gene_locus related to this paper: clope-CPE0307 , clope-CPE0432 , clope-CPE1581 , clope-CPE1596 , clope-CPE1989 , clope-CPE2231 , clope-CPE2312 , clope-lipa , clope-LIPB , clope-PLDB

Title : Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia - Akman_2002_Nat.Genet_32_402
Author(s) : Akman L , Yamashita A , Watanabe H , Oshima K , Shiba T , Hattori M , Aksoy S
Ref : Nat Genet , 32 :402 , 2002
Abstract :
PubMedSearch : Akman_2002_Nat.Genet_32_402
PubMedID: 12219091
Gene_locus related to this paper: wigbr-BIOH

Title : Whole genome sequencing of meticillin-resistant Staphylococcus aureus - Kuroda_2001_Lancet_357_1225
Author(s) : Kuroda M , Ohta T , Uchiyama I , Baba T , Yuzawa H , Kobayashi I , Cui L , Oguchi A , Aoki K , Nagai Y , Lian J , Ito T , Kanamori M , Matsumaru H , Maruyama A , Murakami H , Hosoyama A , Mizutani-Ui Y , Takahashi NK , Sawano T , Inoue R , Kaito C , Sekimizu K , Hirakawa H , Kuhara S , Goto S , Yabuzaki J , Kanehisa M , Yamashita A , Oshima K , Furuya K , Yoshino C , Shiba T , Hattori M , Ogasawara N , Hayashi H , Hiramatsu K
Ref : Lancet , 357 :1225 , 2001
Abstract :
PubMedSearch : Kuroda_2001_Lancet_357_1225
PubMedID: 11418146
Gene_locus related to this paper: staau-LIP , staau-lipas , staau-MW0741 , staau-MW2456 , staau-q6gfm6 , staau-SA0011 , staau-SA0569 , staau-SA0572 , staau-SA0897 , staau-SA1143 , staau-SA2240 , staau-SA2306 , staau-SA2367 , staau-SA2422 , staau-SAV0321 , staau-SAV0446 , staau-SAV0457 , staau-SAV0655 , staau-SAV1014 , staau-SAV1765 , staau-SAV1793 , staau-SAV2188 , staau-SAV2350 , staau-SAV2484 , staau-SAV2594