Gene_locus Report for: arall-d7mbn8 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Serine carboxypeptidase S28 family protein
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis lyrata: N E > Arabidopsis lyrata subsp. lyrata: N E abh_upf0017 :
arall-d7kk58 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Esterase/lipase/thioesterase family protein ,
arall-d7ltj2 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7mpg7 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein .
BD-FAE :
arall-d7kzg6 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Carboxylic ester hydrolase .
Carboxypeptidase_S10 :
arall-d7kzq8 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7lu11 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7m1l4 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein .
Hydroxynitrile_lyase :
arall-d7l971 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7lfd3 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Predicted protein ,
arall-d7lg04 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Hydrolase, alpha/beta fold family protein ,
arall-d7lg05 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7lg06 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7lg07 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7mb17 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7mb18 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein .
Monoglyceridelipase_lysophospholip :
arall-d7kjk9 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Esterase/lipase/thioesterase family protein ,
arall-d7kuj1 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7lyn6 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Esterase/lipase/thioesterase family protein ,
arall-d7m814 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Hydrolase, alpha/beta fold family protein .
Pectinacetylesterase-Notum :
arall-d7kc59 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7mgs1 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Pectinacetylesterase family protein ,
arall-d7l7v2 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Pectinacetylesterase family protein ,
arall-d7l7v3 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Pectinacetylesterase family protein ,
arall-d7lst0 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Pectinacetylesterase family protein ,
arall-d7lfw9 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Putative uncharacterized protein ,
arall-d7mgs6 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Putative uncharacterized protein ,
arall-d7mur3 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Pectin acetylesterase ,
arall-d7kjr5 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Putative uncharacterized protein ,
arall-d7l7v1 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Pectinacetylesterase family protein ,
arall-d7ls88 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Putative uncharacterized protein .
Plant_carboxylesterase :
arall-d7kwe4 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Abhydrolase_3 domain-containing protein .
Plant_lipase_EDS1-like :
arall-d7lri7 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Enhanced disease susceptibility 1 .
PMH_Peptidase_S9 :
arall-d7mi04 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Predicted protein .
PPase_methylesterase_euk :
arall-d7ly06 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Protein phosphatase methylesterase 1 .
Prolylcarboxypeptidase :
arall-d7laf7 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7m1k0 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Serine carboxypeptidase S28 family protein ,
arall-d7m1k1 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Serine carboxypeptidase S28 family protein ,
arall-d7m1k3 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Putative uncharacterized protein ,
arall-d7mbk0 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Serine carboxypeptidase S28 family protein ,
arall-d7mul9 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Serine carboxypeptidase S28 family protein .
S9N_PREPL_Peptidase_S9 :
arall-d7kfz1 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Prolyl oligopeptidase family protein ,
arall-d7kwx5 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Prolyl oligopeptidase family protein ,
arall-d7mld7 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) Predicted protein .
UCP031088 :
arall-d7kcm6 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Uncharacterized protein ,
arall-d7krm0 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). Uncharacterized protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: arall-d7mbn8 Colored MSA for Prolylcarboxypeptidase (raw)
MSSAICFALLTTFTILLSYSSLSDGLQPRRISHGLTESSKYLTRDELWFN
QTLDHYSPSDHRKFRQRYYEYLDHLRVPDGPIFMMICGEGPCNGIPNDYI
TVLAKKFDAGIVSLEHRYYGKSSPFKSLATENLKYLSSKQALFDLAAFRQ
YYQARSNDSLNVKFNRSGNVENPWFFFGASYSGALSAWFRLKFPHLTCGS
LASSAVVRAVYEFPEFDQQIGESAGPECKAALQETNKLLELGLKVNNKAV
KALFNATELDVDADFLYLIADAEVMAIQYGNPDKLCVPLVEAHKNGGDLV
EAYAKYVREFCMGVFGLSSKTYSRKHLLDTAVTPESADRLWWFQVCTEVA
YFQVAPANDSIRSHQINTEYHLDLCKSLFGKGVYPEVDATNLYYGSDRIA
ATKIIFTNGSQDPWRHASKQTSSPELPSYIVTCHNCGHGSDLRGCPQSPM
VIEGDSKNCSSPDAVNKVRQHIVEHMDLWLSECRGGIRSSM
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M S S A I C F A L L T T F T I L L S Y S S L S D G L Q P R R I S H G L T E S S K Y L T R D E L W F N Q T L D H Y S P S D H R K F R Q R Y Y E Y L D H L R V P D G P I F M M I C G E G P C N G I P N D Y I T V L A K K F D A G I V S L E H R Y Y G K S S P F K S L A T E N L K Y L S S K Q A L F D L A A F R Q Y Y Q A R S N D S L N V K F N R S G N V E N P W F F F G A S Y S G A L S A W F R L K F P H L T C G S L A S S A V V R A V Y E F P E F D Q Q I G E S A G P E C K A A L Q E T N K L L E L G L K V N N K A V K A L F N A T E L D V D A D F L Y L I A D A E V M A I Q Y G N P D K L C V P L V E A H K N G G D L V E A Y A K Y V R E F C M G V F G L S S K T Y S R K H L L D T A V T P E S A D R L W W F Q V C T E V A Y F Q V A P A N D S I R S H Q I N T E Y H L D L C K S L F G K G V Y P E V D A T N L Y Y G S D R I A A T K I I F T N G S Q D P W R H A S K Q T S S P E L P S Y I V T C H N C G H G S D L R G C P Q S P M V I E G D S K N C S S P D A V N K V R Q H I V E H M D L W L S E C R G G I R S S M
Reference
Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size changeHu TT , Pattyn P , Bakker EG , Cao J , Cheng JF , Clark RM , Fahlgren N , Fawcett JA , Grimwood J and Guo YL <20 more author(s)> Hu TT , Pattyn P , Bakker EG , Cao J , Cheng JF , Clark RM , Fahlgren N , Fawcett JA , Grimwood J , Gundlach H , Haberer G , Hollister JD , Ossowski S , Ottilar RP , Salamov AA , Schneeberger K , Spannagl M , Wang X , Yang L , Nasrallah ME , Bergelson J , Carrington JC , Gaut BS , Schmutz J , Mayer KF , Van de Peer Y , Grigoriev IV , Nordborg M , Weigel D , Guo YL (- 20) Ref: Nat Genet, 43 :476, 2011 : PubMed Abstract ESTHER: Hu_2011_Nat.Genet_43_476 PubMedSearch: Hu 2011 Nat.Genet 43 476 PubMedID: 21478890 Gene_locus related to this paper: arall-d7kc59 ,
arall-d7kfz1 ,
arall-d7kjk9 ,
arall-d7kk58 ,
arall-d7kuj1 ,
arall-d7kwx5 ,
arall-d7kzq8 ,
arall-d7laf7 ,
arall-D7LAK6 ,
arall-d7ltj2 ,
arall-d7lu11 ,
arall-d7ly06 ,
arall-d7lyn6 ,
arall-d7m1k0 ,
arall-d7m1k1 ,
arall-d7m1k3 ,
arall-d7m1l4 ,
arall-d7m814 ,
arall-d7mbk0 ,
arall-d7mbn8 ,
arall-d7mgs1 ,
arall-d7mi04 ,
arall-d7mld7 ,
arall-d7mpg7 ,
arall-d7mul9 ,
arath-At2g45610 ,
arath-At1g05790 ,
arath-At1g09980 ,
arath-At1g18360 ,
arath-AT1G29120 ,
arath-AT1G73920 ,
arath-AT1G76140 ,
arath-AT2G05260 ,
arath-At2g15230 ,
arath-At2g24280 ,
arath-AT2G42690 ,
arath-At2g47630 ,
arath-AT3G12150 ,
arath-At3g61680 ,
arath-AT3g62590 ,
arath-AT4G00500 ,
arath-AT4G25770 ,
arath-AT4g30610 ,
arath-At5g11650 ,
arath-At5g13640 ,
arath-AT5G19050 ,
arath-AT5G20060 ,
arath-AT5G20520 ,
arath-AT5G27320 ,
arath-At5g42930 ,
arath-At5g47330 ,
arath-CGEP ,
arath-clh1 ,
arath-clh2 ,
arath-F1N13.220 ,
arath-F2G14.100 ,
arath-F12A4.4 ,
arath-F14O10.2 ,
arath-SCP27 ,
arath-HNL ,
arath-GID1B ,
arath-LIP2 ,
arath-At5g17670 ,
arath-pip ,
arath-PLA11 ,
arath-PLA12 ,
arath-PLA13 ,
arath-PLA15 ,
arath-PLA17 ,
arath-Q8LPF5 ,
arath-Q9FFZ1 ,
arath-Q9FJ29 ,
arath-Q9FKP9 ,
arath-Q9FNF6 ,
arath-q9lhe8 ,
arath-Q9SFF6 ,
arath-q84w08 ,
arath-SCP7 ,
arath-SCP8 ,
arath-SCP26 ,
arath-SCP28 ,
arath-SCP33 ,
arath-SCP40 ,
arath-SCPL34 ,
arath-At4g12230 ,
arath-MES14 ,
arath-T19F11.2 ,
arath-MES10 ,
arath-At5g11790 ,
arath-T26B15.8 ,
arath-ZW18 ,
arall-d7l971 ,
arall-d7lfd3 ,
arall-d7lg04 ,
arall-d7lg05 ,
arall-d7lg06 ,
arall-d7lg07 ,
arall-d7mb17 ,
arall-d7mb18 ,
arall-d7l7v2 ,
arall-d7l7v3 ,
arall-d7lst0 ,
arall-d7lfw9 ,
arall-d7mgs6 ,
arall-d7mur3 ,
arall-d7kjr5 ,
arall-d7l7v1 ,
arall-d7ls88 ,
arall-d7kzg6 ,
arall-d7kcm6 ,
arall-d7krm0 ,
arall-d7kwe4 ,
arall-d7lri7 Abstract
We report the 207-Mb genome sequence of the North American Arabidopsis lyrata strain MN47 based on 8.3x dideoxy sequence coverage. We predict 32,670 genes in this outcrossing species compared to the 27,025 genes in the selfing species Arabidopsis thaliana. The much smaller 125-Mb genome of A. thaliana, which diverged from A. lyrata 10 million years ago, likely constitutes the derived state for the family. We found evidence for DNA loss from large-scale rearrangements, but most of the difference in genome size can be attributed to hundreds of thousands of small deletions, mostly in noncoding DNA and transposons. Analysis of deletions and insertions still segregating in A. thaliana indicates that the process of DNA loss is ongoing, suggesting pervasive selection for a smaller genome. The high-quality reference genome sequence for A. lyrata will be an important resource for functional, evolutionary and ecological studies in the genus Arabidopsis.
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