Gene_locus Report for: bommo-h9j594

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Protostomia: N E > Ecdysozoa: N E > Panarthropoda: N E > Arthropoda: N E > Mandibulata: N E > Pancrustacea: N E > Hexapoda: N E > Insecta: N E > Dicondylia: N E > Pterygota: N E > Neoptera: N E > Holometabola: N E > Amphiesmenoptera: N E > Lepidoptera: N E > Glossata: N E > Neolepidoptera: N E > Heteroneura: N E > Ditrysia: N E > Obtectomera: N E > Bombycoidea: N E > Bombycidae: N E > Bombycinae: N E > Bombyx: N E > Bombyx mori: N E

ACHE : bommo-ACHE1Bombyx mori (Silk moth) Bombyx mandarina (Wild silk moth) (Wild silkworm) acetylcholinesterase type 1 (ace1), bommo-ACHE2Bombyx mori (Silk moth) and Bombyx mandarina acetylcholinesterase (domestic silkworm Qiufeng x Baiyu strain and wild type strain) (ace) mRNA, complete cds.
Acidic_Lipase : bommo-q2f5v1Bombyx mori (Silk moth) triacylglycerol lipase.
Carboxypeptidase_S10 : bommo-h9j0s4Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9jle7Bombyx mori (Silk moth) Uncharacterized protein.
Carb_B_Arthropoda : bommo-a0mnw6Bombyx mori (Silk moth) carboxylesterase, bommo-a1yw85Bombyx mori (Silk moth) carboxylesterase, bommo-a9ls22Bombyx mori (Silk moth) Carboxylesterase-6, bommo-b0fgv8Bombyx mori (Silk moth)Bombyx mandarina (Wild silk moth) (Wild silkworm) Carboxylesterase CarE-7, bommo-b1q137Bombyx mori (Silk moth) Carboxylesterase CarE-8 variant 1 and 2, bommo-b1q139Bombyx mori (Silk moth) Bombyx mandarina (Wild silk moth) (Wild silkworm) Carboxylesterase CarE-9, bommo-b1q140Bombyx mori (Silk moth) Carboxylesterase CarE-10 Bmae40 Bmcce-4 Care-10 jhe-lp4, bommo-b1q141Bombyx mori (Silk moth) Carboxylesterase CarE-11 ae17, bommo-b2zdz0Bombyx mori (Silk moth) Carboxylesterase CarE-12, bommo-b3gef6Bombyx mori (Silk moth) Carboxylesterase CarE-13, bommo-b3gef7Bombyx mori (Silk moth) Carboxylesterase CarE-14 alpha-esterase3, bommo-b3gs55Bombyx mori (Silk moth) Carboxylesterase CarE-15, bommo-b3gs56Bombyx mori (Silk moth) Carboxylesterase CarE-16, bommo-d2ktu3Bombyx mori (Silk moth) Carboxyl/ esterase 1, bommo-d2ktu5Bombyx mori (Silk moth) Carboxyl/ esterase 3, bommo-d9ile0Bombyx mori (Silk moth) Antennal esterase, bommo-e1cga6Bombyx mori (Silk moth) Carboxyl/ esterase 7, bommo-h9iu43Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9iu47.1Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9iu47.2Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9iue5Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9iwj7Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9iwj8Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9ix58Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9ixi1.1Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9ixi1.2Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9izw1Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j1y0Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j3r0Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j3w6Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j3w7Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j5t0Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j066Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j067Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j593Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9jde8Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9jde9Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9jdf0Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9jds4Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9jn83Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9jn85Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9jrg2Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9jyh9Bombyx mori (Silk moth) Uncharacterized protein, bommo-m1rmh6Bombyx mori (Silk moth) Carboxylesterase ae2 Antennal esterase, bommo-q1hpp2Bombyx mori (Silk moth) Bombyx mandarina (Wild silk moth) (Wild silkworm) carboxylesterase, bommo-q2f622Bombyx mori (Silk moth) and Bombyx mandarina (Wild silk moth) (Wild silkworm) carboxylesterase Bmae13, bommo-q4tte1Bombyx mori (Silk moth) carboxylesterase.
Epoxide_hydrolase : bommo-q6u6j0 Bombyx mori (Silk moth) juvenile hormone epoxide hydrolase.
Gliotactin : bommo-h9j8g3Bombyx mori (Silk moth) Uncharacterized protein.
Insect_lipase : bommo-q2f644Bombyx mori (Silk moth) triacylglycerol lipase, bommo-Q8MY66Bombyx mori (Silk moth) (and Wild silk moth) Samia cynthia ricini (Indian eri silkmoth) lipase-1.
Juvenile_hormone_esterase : bommo-e1cga5Bombyx mori (Silk moth) Carboxyl/ esterase 6, bommo-h9iu46Bombyx mori (Silk moth) Uncharacterized protein, bommo-JHEBombyx mori (Silk moth) juvenile hormone esterase.
LYsophospholipase_carboxylesterase : bommo-q2f5q1Bombyx mori (Silk moth) lysophospholipase.
Ndr_family : bommo-h9j592Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j604Bombyx mori (Silk moth) Uncharacterized protein.
Neuroligin : bommo-h9iy47Bombyx mori (Silk moth) Uncharacterized protein, bommo-h9j9k9Bombyx mori (Silk moth) Bombyx mandarina (Wild silk moth) (Wild silkworm) Neuroligin, bommo-h9j990Bombyx mori (Silk moth) Uncharacterized protein.
Neurotactin : bommo-h9ivg2Bombyx mori (Silk moth) Uncharacterized protein.
OtherNon-catalytic_C : bommo-q1hq05Bombyx mori (Silk moth) carboxylesterase.
Pancreatic_lipase : bommo-h9iss4Bombyx mori (Silk moth). Uncharacterized protein, bommo-h9j2c7Bombyx mori (Silk moth). Uncharacterized protein.
Pectinacetylesterase-Notum : bommo-h9jpm8Bombyx mori (Silk moth). Uncharacterized protein.
Thioesterase : bommo-O01677Bombyx mori (Silk moth) p260 Thioesterase domain, bommo-O01678Bombyx mori (Silk moth) p270 Thioesterase domain.
Valacyclovir-hydrolase : bommo-g8fpz6Bombyx mori (Silk moth) Bphl-like protein

Title: The genome of a lepidopteran model insect, the silkworm Bombyx mori
Xia Q, Wang J, Zhou Z, Li R, Fan W, Cheng D, Cheng T, Qin J, Duana J and Morishita S <88 more author(s)> Xia Q, Wang J, Zhou Z, Li R, Fan W, Cheng D, Cheng T, Qin J, Duana J, Xu H, Li Q, Li N, Wang M, Dai F, Liu C, Lin Y, Zhao P, Zhang H, Liu S, Zha X, Li C, Zhao A, Pan M, Pan G, Shen Y, Gao Z, Wang Z, Wang G, Wu Z, Hou Y, Chai C, Yu Q, He N, Zhang Z, Li S, Yang H, Lu C, Xiang Z, Mita K, Kasahara M, Nakatani Y, Yamamoto K, Abe H, Ahsan B, Daimoni T, Doi K, Fujii T, Fujiwara H, Fujiyama A, Futahashi R, Hashimotol S, Ishibashi J, Iwami M, Kadono-Okuda K, Kanamori H, Kataoka H, Katsuma S, Kawaoka S, Kawasaki H, Kohara Y, Kozaki T, Kuroshu RM, Kuwazaki S, Matsushima K, Minami H, Nagayasu Y, Nakagawa T, Narukawa J, Nohata J, Ohishi K, Ono Y, Osanai-Futahashi M, Ozaki K, Qu W, Roller L, Sasaki S, Sasaki T, Seino A, Shimomura M, Shin-I T, Shinoda T, Shiotsuki T, Suetsugu Y, Sugano S, Suwa M, Suzuki Y, Takiya S, Tamura T, Tanaka H, Tanaka Y, Touhara K, Yamada T, Yamakawa M, Yamanaka N, Yoshikawa H, Zhong YS, Shimada T, Morishita S (- 88)
Ref: Insect Biochemistry & Molecular Biology, 38:1036, 2008 : PubMed
Abstract


ESTHER: Xia_2008_Insect.Biochem.Mol.Biol_38_1036
PubMedSearch: Xia 2008 Insect.Biochem.Mol.Biol 38 1036
PubMedID: 19121390
Gene_locus related to this paper: bommo-a0mnw6, bommo-a1yw85, bommo-a9ls22, bommo-ACHE1, bommo-ACHE2, bommo-b0fgv8, bommo-b1q137, bommo-b1q139, bommo-b1q140, bommo-b1q141, bommo-b2zdz0, bommo-b3gef6, bommo-b3gef7, bommo-b3gs55, bommo-b3gs56, bommo-d2ktu3, bommo-d2ktu5, bommo-d9ile0, bommo-e1cga5, bommo-e1cga6, bommo-g8fpz6, bommo-h9iu43, bommo-h9iu46, bommo-h9iu47.1, bommo-h9iu47.2, bommo-h9iue5, bommo-h9ivg2, bommo-h9iwj7, bommo-h9iwj8, bommo-h9ix58, bommo-h9ixi1.1, bommo-h9ixi1.2, bommo-h9iy47, bommo-h9izw1, bommo-h9j0s4, bommo-h9j1y0, bommo-h9j3r0, bommo-h9j3w6, bommo-h9j3w7, bommo-h9j5t0, bommo-h9j8g3, bommo-h9j9k9, bommo-h9j066, bommo-h9j067, bommo-h9j593, bommo-h9j594, bommo-h9j990, bommo-h9jde8, bommo-h9jde9, bommo-h9jdf0, bommo-h9jds4, bommo-h9jle7, bommo-h9jn83, bommo-h9jn85, bommo-h9jrg2, bommo-h9jyh9, bommo-JHE, bommo-m1rmh6, bommo-q1hq05, bommo-q4tte1, bommo-h9j592, bommo-h9j604, bommo-h9jpm8, bommo-h9iss4, bommo-h9j2c7

Abstract

Bombyx mori, the domesticated silkworm, is a major insect model for research, and the first lepidopteran for which draft genome sequences became available in 2004. Two independent data sets from whole-genome shotgun sequencing were merged and assembled together with newly obtained fosmid- and BAC-end sequences. The remarkably improved new assembly is presented here. The 8.5-fold sequence coverage of an estimated 432 Mb genome was assembled into scaffolds with an N50 size of approximately 3.7 Mb; the largest scaffold was 14.5 million base pairs. With help of a high-density SNP linkage map, we anchored 87% of the scaffold sequences to all 28 chromosomes. A particular feature was the high repetitive sequence content estimated to be 43.6% and that consisted mainly of transposable elements. We predicted 14,623 gene models based on a GLEAN-based algorithm, a more accurate prediction than the previous gene models for this species. Over three thousand silkworm genes have no homologs in other insect or vertebrate genomes. Some insights into gene evolution and into characteristic biological processes are presented here and in other papers in this issue. The massive silk production correlates with the existence of specific tRNA clusters, and of several sericin genes assembled in a cluster. The silkworm's adaptation to feeding on mulberry leaves, which contain toxic alkaloids, is likely linked to the presence of new-type sucrase genes, apparently acquired from bacteria. The silkworm genome also revealed the cascade of genes involved in the juvenile hormone biosynthesis pathway, and a large number of cuticular protein genes.