Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: brafl-ACHEB

Branchiostoma floridae (Florida lancelet) (Amphioxus) Putative uncharacterized protein

Comment
genes 119542 brafl-ACHEB (70800) brafl-ACHEA (116869) brafl-ACHE2 in a same contig scaffold_30 Another scafold_628 probably allelic to the other contains brafl-ACHE2 (273173) brafl-ACHEA (288582) brafl-ACHEB (132079)


Relationship
Family|ACHE
Block| C
Position in NCBI Life Tree|Branchiostoma floridae
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Cephalochordata: N E > Branchiostomidae: N E > Branchiostoma: N E > Branchiostoma floridae: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 1 more: DS986723, DS987321, GG666612
1 UniProt : C3ZD77
1 Ncbi-nid : 260796856
1 Ncbi-pid : 260796857
1 UniProt : C3ZD77
1 Interpro : C3ZD77
1 Prodom : C3ZD77
1 Pfam : C3ZD77
1 PIRSF : C3ZD77
1 SUPERFAM : C3ZD77
2 JGI Amphioxus gene : 119542, 132079
Sequence
Graphical view for this peptide sequence: brafl-ACHEB
Colored MSA for ACHE (raw)
MTGRGVRLVLLSITLSVAVAQRTVIETTTGKVRGKVLNLYGRQVVAFLGI
PYAEPPIGPLRFKPPQPAKNWTSVFDAFKYGNSCYQIKDTLFPNFTGSEA
WNANTPLSEDCLKINVWMPNPPPADKTVMVWIYGGGFWYGTASLDYYDGK
TIAAIENVVVVSMNYRVGSMGFLALGHPDAPGNMGLMDQNLALQWVQKNI
AFFGGDPQKVTILGESAGSVSVGYHLLSMKSRSLFSRAIMQSGAPNCPWA
FITNKEALRRGKAFARAVECPTTVPLAQTIECLRSKPADYIIANEWVTSD
PIFRFPHVPVIDGTFITEDPKTSIRRGNFKKCSLLAGAVKDEGTFFLIYG
APGFSKQTESLISRSQFLEGVQMSVPETNSFGVDAIAFQYTDWLKENDGV
SNRDALDDVVGDHNVICPLNDFAHAYASFGQAVYKYSFEQRASNLVWPKW
MGTPHGYEIEFQFGLPLEPKRNYTRDEANFSRRMMRNWANFARTGNPNKE
SFQTYSQELWPRYTVSGRQFITLDINPPKLGQGPRIDECALWSEYLPKLT
RQTSDISEAERLWKEEFKLWTKQYMEDWKAQYKDYVNYRDEGCPRPSN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTGRGVRLVLLSITLSVAVAQRTVIETTTGKVRGKVLNLYGRQVVAFLGI
PYAEPPIGPLRFKPPQPAKNWTSVFDAFKYGNSCYQIKDTLFPNFTGSEA
WNANTPLSEDCLKINVWMPNPPPADKTVMVWIYGGGFWYGTASLDYYDGK
TIAAIENVVVVSMNYRVGSMGFLALGHPDAPGNMGLMDQNLALQWVQKNI
AFFGGDPQKVTILGESAGSVSVGYHLLSMKSRSLFSRAIMQSGAPNCPWA
FITNKEALRRGKAFARAVECPTTVPLAQTIECLRSKPADYIIANEWVTSD
PIFRFPHVPVIDGTFITEDPKTSIRRGNFKKCSLLAGAVKDEGTFFLIYG
APGFSKQTESLISRSQFLEGVQMSVPETNSFGVDAIAFQYTDWLKENDGV
SNRDALDDVVGDHNVICPLNDFAHAYASFGQAVYKYSFEQRASNLVWPKW
MGTPHGYEIEFQFGLPLEPKRNYTRDEANFSRRMMRNWANFARTGNPNKE
SFQTYSQELWPRYTVSGRQFITLDINPPKLGQGPRIDECALWSEYLPKLT
RQTSDISEAERLWKEEFKLWTKQYMEDWKAQYKDYVNYRDEGCPRPSN


Reference
    Title: The amphioxus genome and the evolution of the chordate karyotype
    Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A and Rokhsar DS <27 more author(s)>
    Ref: Nature, 453:1064, 2008 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer