Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: lisin-LIN0850

Listeria innocua, Listeria ivanovii, lin0850 protein

Comment
Other strains: Listeria innocua (FSL S4-378; ATCC 33091) Listeria ivanovii FSL F6-596


Relationship
Family|CarbLipBact_2
Block| X
Position in NCBI Life Tree|Listeria innocua
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Firmicutes: N E > Bacilli: N E > Bacillales: N E > Listeriaceae: N E > Listeria: N E > Listeria innocua: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 1 more: AL596166, ADXG01000809, ADXI01000537
1 UniProt : H1GBZ3
2 UniProt : Q92DG3, H1GBZ3
2 Interpro : Q92DG3, H1GBZ3
2 Prodom : Q92DG3, H1GBZ3
2 Pfam : Q92DG3, H1GBZ3
2 PIRSF : Q92DG3, H1GBZ3
2 SUPERFAM : Q92DG3, H1GBZ3
Sequence
Graphical view for this peptide sequence: lisin-LIN0850
Colored MSA for CarbLipBact_2 (raw)
MVACLCIHGFTGSPSEVKPLADYLREHTDWDVLAPTLPGHDHLRHLKNVT
YKDWIVFVDSILSQMLKEDDEVYIIGFSMGGLLAGWLARHYPEVKKLVLL
STAVNAMEWPQIIENSKQVITEAKEVTLKNSPMFKRYQKKVTETPWTSTL
QFKKMVALAKPVFEHIEIPTFIAQGSADPIVPAEKSVNFLMESIPGPKEL
FILEGSKHVICQDEQADKLFAAVLTFLQKDVAVLNAN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MVACLCIHGFTGSPSEVKPLADYLREHTDWDVLAPTLPGHDHLRHLKNVT
YKDWIVFVDSILSQMLKEDDEVYIIGFSMGGLLAGWLARHYPEVKKLVLL
STAVNAMEWPQIIENSKQVITEAKEVTLKNSPMFKRYQKKVTETPWTSTL
QFKKMVALAKPVFEHIEIPTFIAQGSADPIVPAEKSVNFLMESIPGPKEL
FILEGSKHVICQDEQADKLFAAVLTFLQKDVAVLNAN


References
    Title: Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss
    den Bakker HC, Cummings CA, Ferreira V, Vatta P, Orsi RH, Degoricija L, Barker M, Petrauskene O, Furtado MR, Wiedmann M
    Ref: BMC Genomics, 11:688, 2010 : PubMed

            

    Title: Genome-wide cloning and characterization of microbial esterases
    Ro HS, Hong HP, Kho BH, Kim S, Chung BH
    Ref: FEMS Microbiology Letters, 233:97, 2004 : PubMed

            

    Title: Comparative genomics of Listeria species
    Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, Berche P, Bloecker H, Brandt P and Cossart P <45 more author(s)>
    Ref: Science, 294:849, 2001 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer