Gene_locus Report for: sheon-q8ej95 Shewanella oneidensis Putative uncharacterized protein
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Alteromonadales: N E > Shewanellaceae: N E > Shewanella: N E > Shewanella oneidensis: N E 6_AlphaBeta_hydrolase :
sheon-SO1224 Shewanella oneidensis (and Shewanella sp. MR-4 Shewanella sp. MR-7) conserved hypothetical protein ,
sheon-SO1976 Shewanella oneidensis hydrolase, alpha/beta fold family ,
sheon-SO2582 Shewanella oneidensis (and Shewanella sp. MR-4, Shewanella putrefaciens CN-32 Shewanella sp. MR-7 Shewanella sp. ANA-3) hydrolase, alpha/beta fold family .
A85-EsteraseD-FGH :
sheon-SO2055 Shewanella oneidensis Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella putrefaciens CN-32 Shewanella sp. ANA-3 esterase, putative ,
shefn-SfSFGH .
A85-IroE-IroD-Fes-Yiel :
sheon-SO3025 ,
sheon-SO4543 Shewanella oneidensis (strain MR-1) hypothetical protein .
ABHD11-Acetyl_transferase :
sheon-SO2333 Shewanella oneidensis Shewanella sp. MR-4 Shewanella sp. ANA-3 hydrolase, alpha/beta fold family .
abh_upf0017 :
sheon-SO0880 Shewanella oneidensis (and Shewanella sp. MR-4, Shewanella putrefaciens CN-32 Shewanella sp. MR-7 Shewanella sp. ANA-3) conserved hypothetical protein .
abh_upf00227 :
sheon-SO3900 Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, Shewanella baltica OS155 conserved hypothetical protein ,
sheon-ym51 Shewanella oneidensis Shewanella sp. W3-18-1 Shewanella sp. MR-4 Shewanella putrefaciens CN-32 Shewanella sp. MR-7 Shewanella sp. ANA-3 hypothetical protein so2251 .
ACPH_Peptidase_S9 :
sheon-SO1539 Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, conserved hypothetical protein .
Bacterial_lip_FamI.8 :
sheon-SO2024 Shewanella oneidensis hypothetical protein .
BioH :
sheon-BIOH Shewanella oneidensis Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella sp. ANA-3 bioh protein .
Dienelactone_hydrolase :
sheoe-SO0967 Shewanella oneidensis dienelactone hydrolase family protein ,
sheon-SO1006 Shewanella oneidensis, Shewanella sp. Shewanella putrefaciens, Shewanella baltica dienelactone hydrolase family protein. twin-arginine translocation pathway signal .
DPP4N_Peptidase_S9 :
sheon-SO0614 Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, dipeptidyl peptidase IV, putative ,
sheon-SO3990 Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, peptidase s9 dipeptidyl peptidase IV .
Epoxide_hydrolase :
sheon-SO2473 Shewanella oneidensis (and Shewanella sp. MR-4, Shewanella putrefaciens CN-32 Shewanella sp. MR-7 Shewanella sp. ANA-3) hydrolase, alpha/beta fold family .
Glutamyl_Peptidase_S9 :
sheon-SO1310 Shewanella oneidensis (and Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella sp. ANA-3) conserved hypothetical protein .
Haloalkane_dehalogenase-HLD1 :
sheon-SO1743 Shewanella oneidensis (Shewanella sp. MR-4; MR-7; ANA-3; Shewanella baltica (strain OS155 / ATCC BAA-1091) hydrolase, Haloalkane_dehalogenase HLDIII .
Hormone-sensitive_lipase_like :
sheon-SO0616 Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, esterase, putative ,
sheon-SO0801 Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, conserved hypothetical protein .
Hydrolase_RBBP9_YdeN :
sheon-SO4650 Shewanella oneidensis, Shewanella sp. W3-18-1, Shewanella putrefaciens CN-32 conserved hypothetical protein .
Lipase_bact_N_lipase :
sheon-SO2934 Shewanella oneidensis conserved hypothetical protein .
LYsophospholipase_carboxylesterase :
sheon-SO1999 Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, phospholipase/carboxylesterase family protein .
MenH_SHCHC :
sheon-SO4574 Shewanella oneidensis Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella sp. ANA-3 hydrolase, alpha/beta fold family .
Monoglyceridelipase_lysophospholip :
sheon-LYPA Shewanella oneidensis Shewanella sp. (MR-4; MR-7; ANA-3) Shewanella putrefaciens CN-32 lysophospholipase l2 .
NLS3-Tex30 :
sheon-SO1534 Shewanella oneidensis conserved hypothetical protein .
PMH_Peptidase_S9 :
sheon-SO1686 Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, prolyl oligopeptidase family protein .
Proline_iminopeptidase :
sheon-PIP Shewanella oneidensis Shewanella putrefaciens CN-32 proline iminopeptidase ,
sheon-SO0071 Shewanella oneidensis hydrolase, alpha/beta hydrolase fold family ,
sheon-SO4400 Shewanella oneidensis proline iminopeptidase, putative .
Prolyl_oligopeptidase_S9 :
sheon-SO2223 Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, peptidase, putative ,
sheon-SO4252 Shewanella oneidensis, Shewanella sp., prolyl oligopeptidase family protein ,
sheon-SO4537 Shewanella oneidensis, Shewanella putrefaciens, Shewanella sp., peptidase, putative ,
sheon-SO4618 Shewanella oneidensis (and Shewanella sp. MR-4 Shewanella sp. ANA-3, Shewanella baltica OS155) prolyl oligopeptidase family protein ,
sheon-SOA0048 Shewanella oneidensis prolyl oligopeptidase family protein .
S9N_PPCE_Peptidase_S9 :
sheon-SO2047 Shewanella oneidensis (and Shewanella sp. MR-4, Shewanella putrefaciens CN-32 Shewanella sp. MR-7 Shewanella sp. ANA-3) prolyl oligopeptidase family protein ,
sheon-SO2753 Shewanella oneidensis, Shewanella baltica, Shewanella sp., Shewanella putrefaciens, prolyl endopeptidase .
S9N_PREPL_Peptidase_S9 :
sheon-PTRB Shewanella oneidensis, Shewanella sp., Shewanella putrefaciens, protease II (EC 3.4.21.83) Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can
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(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Shewanella oneidensis MR-1:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: sheon-q8ej95 Colored MSA for Duf_3530 (raw)
MFALASLTLWAADPSTQAPETSPQPTPADSQASAPIQPKRTSNYLPANEI
KQITIDNQPLELLVRSWEGRKKLGAAIILPATNGTADAPGLMAFVRRNIN
AAGWASLSLTPPTEPPAPNFATPATEVTTAGSAQLTSPSNKPSQKVKPED
SNKHLIEQEDFLVKSMSQLDSVGADFPGKRVLITADQSAGLLISLLSQKK
IADPDVLIVINPYSEDETRNQAIAEKLAKLTMPILDIQSPDGHPASLETA
AQRKTLAVTLETPNYRQTTLVLNLDNESAWQNCLTAIRGFAARMSGAH
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M F A L A S L T L W A A D P S T Q A P E T S P Q P T P A D S Q A S A P I Q P K R T S N Y L P A N E I K Q I T I D N Q P L E L L V R S W E G R K K L G A A I I L P A T N G T A D A P G L M A F V R R N I N A A G W A S L S L T P P T E P P A P N F A T P A T E V T T A G S A Q L T S P S N K P S Q K V K P E D S N K H L I E Q E D F L V K S M S Q L D S V G A D F P G K R V L I T A D Q S A G L L I S L L S Q K K I A D P D V L I V I N P Y S E D E T R N Q A I A E K L A K L T M P I L D I Q S P D G H P A S L E T A A Q R K T L A V T L E T P N Y R Q T T L V L N L D N E S A W Q N C L T A I R G F A A R M S G A H
Reference
Title: Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensisHeidelberg JF , Paulsen IT , Nelson KE , Gaidos EJ , Nelson WC , Read TD , Eisen JA , Seshadri R , Ward N and Fraser CM <33 more author(s)> Heidelberg JF , Paulsen IT , Nelson KE , Gaidos EJ , Nelson WC , Read TD , Eisen JA , Seshadri R , Ward N , Methe B , Clayton RA , Meyer T , Tsapin A , Scott J , Beanan M , Brinkac L , Daugherty S , DeBoy RT , Dodson RJ , Durkin AS , Haft DH , Kolonay JF , Madupu R , Peterson JD , Umayam LA , White O , Wolf AM , Vamathevan J , Weidman J , Impraim M , Lee K , Berry K , Lee C , Mueller J , Khouri H , Gill J , Utterback TR , McDonald LA , Feldblyum TV , Smith HO , Venter JC , Nealson KH , Fraser CM (- 33) Ref: Nat Biotechnol, 20 :1118, 2002 : PubMed Abstract ESTHER: Heidelberg_2002_Nat.Biotechnol_20_1118 PubMedSearch: Heidelberg 2002 Nat.Biotechnol 20 1118 PubMedID: 12368813 Gene_locus related to this paper: sheon-BIOH ,
sheon-LYPA ,
sheon-PIP ,
sheon-PTRB ,
sheon-q8ej95 ,
sheon-SO0071 ,
sheon-SO0614 ,
sheon-SO0616 ,
sheon-SO0801 ,
sheon-SO0880 ,
sheoe-SO0967 ,
sheon-SO1006 ,
sheon-SO1224 ,
sheon-SO1310 ,
sheon-SO1534 ,
sheon-SO1539 ,
sheon-SO1686 ,
sheon-SO1743 ,
sheon-SO1976 ,
sheon-SO1999 ,
sheon-SO2024 ,
sheon-SO2047 ,
sheon-SO2055 ,
sheon-SO2223 ,
sheon-SO2333 ,
sheon-SO2473 ,
sheon-SO2582 ,
sheon-SO2753 ,
sheon-SO2934 ,
sheon-SO3025 ,
sheon-SO3900 ,
sheon-SO3990 ,
sheon-SO4252 ,
sheon-SO4400 ,
sheon-SO4537 ,
sheon-SO4543 ,
sheon-SO4574 ,
sheon-SO4618 ,
sheon-SO4650 ,
sheon-SOA0048 ,
shefn-SfSFGH ,
sheon-ym51 Abstract
Shewanella oneidensis is an important model organism for bioremediation studies because of its diverse respiratory capabilities, conferred in part by multicomponent, branched electron transport systems. Here we report the sequencing of the S. oneidensis genome, which consists of a 4,969,803-base pair circular chromosome with 4,758 predicted protein-encoding open reading frames (CDS) and a 161,613-base pair plasmid with 173 CDSs. We identified the first Shewanella lambda-like phage, providing a potential tool for further genome engineering. Genome analysis revealed 39 c-type cytochromes, including 32 previously unidentified in S. oneidensis, and a novel periplasmic [Fe] hydrogenase, which are integral members of the electron transport system. This genome sequence represents a critical step in the elucidation of the pathways for reduction (and bioremediation) of pollutants such as uranium (U) and chromium (Cr), and offers a starting point for defining this organism's complex electron transport systems and metal ion-reducing capabilities.
Other Papers
Shewanella frigidimarina NCIMB 400; Shewanella oneidensis SfSFGH cold-active S-formylglutathione hydrolase