Theologis_2000_Nature_408_816

Reference

Title : Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana - Theologis_2000_Nature_408_816
Author(s) : Theologis A , Ecker JR , Palm CJ , Federspiel NA , Kaul S , White O , Alonso J , Altafi H , Araujo R , Bowman CL , Brooks SY , Buehler E , Chan A , Chao Q , Chen H , Cheuk RF , Chin CW , Chung MK , Conn L , Conway AB , Conway AR , Creasy TH , Dewar K , Dunn P , Etgu P , Feldblyum TV , Feng J , Fong B , Fujii CY , Gill JE , Goldsmith AD , Haas B , Hansen NF , Hughes B , Huizar L , Hunter JL , Jenkins J , Johnson-Hopson C , Khan S , Khaykin E , Kim CJ , Koo HL , Kremenetskaia I , Kurtz DB , Kwan A , Lam B , Langin-Hooper S , Lee A , Lee JM , Lenz CA , Li JH , Li Y , Lin X , Liu SX , Liu ZA , Luros JS , Maiti R , Marziali A , Militscher J , Miranda M , Nguyen M , Nierman WC , Osborne BI , Pai G , Peterson J , Pham PK , Rizzo M , Rooney T , Rowley D , Sakano H , Salzberg SL , Schwartz JR , Shinn P , Southwick AM , Sun H , Tallon LJ , Tambunga G , Toriumi MJ , Town CD , Utterback T , Van Aken S , Vaysberg M , Vysotskaia VS , Walker M , Wu D , Yu G , Fraser CM , Venter JC , Davis RW
Ref : Nature , 408 :816 , 2000
Abstract :

The genome of the flowering plant Arabidopsis thaliana has five chromosomes. Here we report the sequence of the largest, chromosome 1, in two contigs of around 14.2 and 14.6 megabases. The contigs extend from the telomeres to the centromeric borders, regions rich in transposons, retrotransposons and repetitive elements such as the 180-base-pair repeat. The chromosome represents 25% of the genome and contains about 6,850 open reading frames, 236 transfer RNAs (tRNAs) and 12 small nuclear RNAs. There are two clusters of tRNA genes at different places on the chromosome. One consists of 27 tRNA(Pro) genes and the other contains 27 tandem repeats of tRNA(Tyr)-tRNA(Tyr)-tRNA(Ser) genes. Chromosome 1 contains about 300 gene families with clustered duplications. There are also many repeat elements, representing 8% of the sequence.

PubMedSearch : Theologis_2000_Nature_408_816
PubMedID: 11130712
Gene_locus related to this paper: arath-At1g05790 , arath-At1g09280 , arath-At1g09980 , arath-AT1G29120 , arath-AT1G52695 , arath-AT1G66900 , arath-At1g73750 , arath-AT1G73920 , arath-AT1G74640 , arath-AT1G76140 , arath-AT1G78210 , arath-clh1 , arath-F1O17.3 , arath-F1O17.4 , arath-F1O17.5 , arath-F5I6.3 , arath-At1g52700 , arath-F6D8.27 , arath-F6D8.32 , arath-F9L1.44 , arath-F9P14.11 , arath-F12A4.4 , arath-MES11 , arath-F14G24.2 , arath-F14G24.3 , arath-F14I3.4 , arath-F14O10.2 , arath-F16N3.25 , arath-LCAT2 , arath-At1g34340 , arath-MES15 , arath-CXE6 , arath-ICML1 , arath-At1g72620 , arath-LCAT1 , arath-PLA12 , arath-PLA15 , arath-PLA17 , arath-Q8L7S1 , arath-At1g15070 , arath-SCP2 , arath-SCP4 , arath-SCP5 , arath-SCP18 , arath-SCP32 , arath-SCP44 , arath-SCP45 , arath-SCPL6 , arath-F4IE65 , arath-At1g30370 , arath-T6L1.8 , arath-T6L1.20 , arath-T14P4.6 , arath-MES14 , arath-SCP3 , arath-AXR4 , arath-At1g10040 , arath-ZW18 , arath-pae2 , arath-pae1 , arath-a0a1p8awg3

Related information

Gene_locus arath-At1g05790    arath-At1g09280    arath-At1g09980    arath-AT1G29120    arath-AT1G52695    arath-AT1G66900    arath-At1g73750    arath-AT1G73920    arath-AT1G74640    arath-AT1G76140    arath-AT1G78210    arath-clh1    arath-F1O17.3    arath-F1O17.4    arath-F1O17.5    arath-F5I6.3    arath-At1g52700    arath-F6D8.27    arath-F6D8.32    arath-F9L1.44    arath-F9P14.11    arath-F12A4.4    arath-MES11    arath-F14G24.2    arath-F14G24.3    arath-F14I3.4    arath-F14O10.2    arath-F16N3.25    arath-LCAT2    arath-At1g34340    arath-MES15    arath-CXE6    arath-ICML1    arath-At1g72620    arath-LCAT1    arath-PLA12    arath-PLA15    arath-PLA17    arath-Q8L7S1    arath-At1g15070    arath-SCP2    arath-SCP4    arath-SCP5    arath-SCP18    arath-SCP32    arath-SCP44    arath-SCP45    arath-SCPL6    arath-F4IE65    arath-At1g30370    arath-T6L1.8    arath-T6L1.20    arath-T14P4.6    arath-MES14    arath-SCP3    arath-AXR4    arath-At1g10040    arath-ZW18    arath-pae2    arath-pae1    arath-a0a1p8awg3
Gene_locus_frgt arath-At1g05790    arath-At1g09280    arath-At1g09980    arath-AT1G29120    arath-AT1G52695    arath-AT1G66900    arath-At1g73750    arath-AT1G73920    arath-AT1G74640    arath-AT1G76140    arath-AT1G78210    arath-clh1    arath-F1O17.3    arath-F1O17.4    arath-F1O17.5    arath-F5I6.3    arath-At1g52700    arath-F6D8.27    arath-F6D8.32    arath-F9L1.44    arath-F9P14.11    arath-F12A4.4    arath-MES11    arath-F14G24.2    arath-F14G24.3    arath-F14I3.4    arath-F14O10.2    arath-F16N3.25    arath-LCAT2    arath-At1g34340    arath-MES15    arath-CXE6    arath-ICML1    arath-At1g72620    arath-LCAT1    arath-PLA12    arath-PLA15    arath-PLA17    arath-Q8L7S1    arath-At1g15070    arath-SCP2    arath-SCP4    arath-SCP5    arath-SCP18    arath-SCP32    arath-SCP44    arath-SCP45    arath-SCPL6    arath-F4IE65    arath-At1g30370    arath-T6L1.8    arath-T6L1.20    arath-T14P4.6    arath-MES14    arath-SCP3    arath-AXR4    arath-At1g10040    arath-ZW18    arath-pae2    arath-pae1    arath-a0a1p8awg3    arath-F6D8.6    arath-F6D8.7    arath-At1g51300

Citations formats

Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, Cheuk RF, Chin CW, Chung MK, Conn L, Conway AB, Conway AR, Creasy TH, Dewar K, Dunn P, Etgu P, Feldblyum TV, Feng J, Fong B, Fujii CY, Gill JE, Goldsmith AD, Haas B, Hansen NF, Hughes B, Huizar L, Hunter JL, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim CJ, Koo HL, Kremenetskaia I, Kurtz DB, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee JM, Lenz CA, Li JH, Li Y, Lin X, Liu SX, Liu ZA, Luros JS, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman WC, Osborne BI, Pai G, Peterson J, Pham PK, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg SL, Schwartz JR, Shinn P, Southwick AM, Sun H, Tallon LJ, Tambunga G, Toriumi MJ, Town CD, Utterback T, Van Aken S, Vaysberg M, Vysotskaia VS, Walker M, Wu D, Yu G, Fraser CM, Venter JC, Davis RW (2000)
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
Nature 408 :816

Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, Cheuk RF, Chin CW, Chung MK, Conn L, Conway AB, Conway AR, Creasy TH, Dewar K, Dunn P, Etgu P, Feldblyum TV, Feng J, Fong B, Fujii CY, Gill JE, Goldsmith AD, Haas B, Hansen NF, Hughes B, Huizar L, Hunter JL, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim CJ, Koo HL, Kremenetskaia I, Kurtz DB, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee JM, Lenz CA, Li JH, Li Y, Lin X, Liu SX, Liu ZA, Luros JS, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman WC, Osborne BI, Pai G, Peterson J, Pham PK, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg SL, Schwartz JR, Shinn P, Southwick AM, Sun H, Tallon LJ, Tambunga G, Toriumi MJ, Town CD, Utterback T, Van Aken S, Vaysberg M, Vysotskaia VS, Walker M, Wu D, Yu G, Fraser CM, Venter JC, Davis RW (2000)
Nature 408 :816