Federspiel NA

References (4)

Title : The diploid genome sequence of Candida albicans - Jones_2004_Proc.Natl.Acad.Sci.U.S.A_101_7329
Author(s) : Jones T , Federspiel NA , Chibana H , Dungan J , Kalman S , Magee BB , Newport G , Thorstenson YR , Agabian N , Magee PT , Davis RW , Scherer S
Ref : Proc Natl Acad Sci U S A , 101 :7329 , 2004
Abstract : We present the diploid genome sequence of the fungal pathogen Candida albicans. Because C. albicans has no known haploid or homozygous form, sequencing was performed as a whole-genome shotgun of the heterozygous diploid genome in strain SC5314, a clinical isolate that is the parent of strains widely used for molecular analysis. We developed computational methods to assemble a diploid genome sequence in good agreement with available physical mapping data. We provide a whole-genome description of heterozygosity in the organism. Comparative genomic analyses provide important clues about the evolution of the species and its mechanisms of pathogenesis.
ESTHER : Jones_2004_Proc.Natl.Acad.Sci.U.S.A_101_7329
PubMedSearch : Jones_2004_Proc.Natl.Acad.Sci.U.S.A_101_7329
PubMedID: 15123810
Gene_locus related to this paper: canal-apth1 , canal-ATG15 , canal-bna7 , canal-c4yl13 , canal-cbpy , canal-LIP1 , canal-LIP2 , canal-LIP3 , canal-LIP4 , canal-LIP5 , canal-LIP6 , canal-LIP7 , canal-LIP8 , canal-LIP9 , canal-LIP10 , canal-ppme1 , canal-q5a0c9 , canal-q5a0i7 , canal-q5a2i9 , canal-q5a2u7 , canal-q5a6l4 , canal-q5a042 , canal-q5a948 , canal-q5aa97 , canal-q5abf2 , canal-q5acl5 , canal-q5ad17 , canal-q5adx4 , canal-q5ady2 , canal-q5aeu3 , canal-q5afp8 , canal-q5ag57 , canal-q5ah37 , canal-q5ai09 , canal-q5ai12 , canal-q5ai87 , canal-q5ajt3 , canal-q5ak09 , canal-q5ak29 , canal-q5ak96 , canal-q5akr2 , canal-q5akz5 , canal-q5amg8 , canal-q5amn4 , canal-q5amn7 , canal-q5ams2 , canal-q5ams7 , canal-q5apu4 , canal-q59k70 , canal-q59kl3 , canal-q59l46 , canal-q59ln6 , canal-q59m48 , canal-q59ng0 , canal-q59nl9 , canal-q59nw6 , canal-q59nx4 , canal-q59nx8 , canal-q59s22 , canal-q59tt5 , canal-q59u61 , canal-q59u64 , canal-q59vf1 , canal-q59vp0 , canal-q59we9 , canal-q59xq6 , canal-q59y42 , canal-q59y97 , canaw-c4yrr3 , canal-hda1

Title : The composite genome of the legume symbiont Sinorhizobium meliloti - Galibert_2001_Science_293_668
Author(s) : Galibert F , Finan TM , Long SR , Puhler A , Abola P , Ampe F , Barloy-Hubler F , Barnett MJ , Becker A , Boistard P , Bothe G , Boutry M , Bowser L , Buhrmester J , Cadieu E , Capela D , Chain P , Cowie A , Davis RW , Dreano S , Federspiel NA , Fisher RF , Gloux S , Godrie T , Goffeau A , Golding B , Gouzy J , Gurjal M , Hernandez-Lucas I , Hong A , Huizar L , Hyman RW , Jones T , Kahn D , Kahn ML , Kalman S , Keating DH , Kiss E , Komp C , Lelaure V , Masuy D , Palm C , Peck MC , Pohl TM , Portetelle D , Purnelle B , Ramsperger U , Surzycki R , Thebault P , Vandenbol M , Vorholter FJ , Weidner S , Wells DH , Wong K , Yeh KC , Batut J
Ref : Science , 293 :668 , 2001
Abstract : The scarcity of usable nitrogen frequently limits plant growth. A tight metabolic association with rhizobial bacteria allows legumes to obtain nitrogen compounds by bacterial reduction of dinitrogen (N2) to ammonium (NH4+). We present here the annotated DNA sequence of the alpha-proteobacterium Sinorhizobium meliloti, the symbiont of alfalfa. The tripartite 6.7-megabase (Mb) genome comprises a 3.65-Mb chromosome, and 1.35-Mb pSymA and 1.68-Mb pSymB megaplasmids. Genome sequence analysis indicates that all three elements contribute, in varying degrees, to symbiosis and reveals how this genome may have emerged during evolution. The genome sequence will be useful in understanding the dynamics of interkingdom associations and of life in soil environments.
ESTHER : Galibert_2001_Science_293_668
PubMedSearch : Galibert_2001_Science_293_668
PubMedID: 11474104
Gene_locus related to this paper: rhime-PTRB , rhime-R01391 , rhime-R01762 , rhime-R02260 , rhime-RB0025 , rhime-RB0171

Title : Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid - Barnett_2001_Proc.Natl.Acad.Sci.U.S.A_98_9883
Author(s) : Barnett MJ , Fisher RF , Jones T , Komp C , Abola AP , Barloy-Hubler F , Bowser L , Capela D , Galibert F , Gouzy J , Gurjal M , Hong A , Huizar L , Hyman RW , Kahn D , Kahn ML , Kalman S , Keating DH , Palm C , Peck MC , Surzycki R , Wells DH , Yeh KC , Davis RW , Federspiel NA , Long SR
Ref : Proc Natl Acad Sci U S A , 98 :9883 , 2001
Abstract : The symbiotic nitrogen-fixing soil bacterium Sinorhizobium meliloti contains three replicons: pSymA, pSymB, and the chromosome. We report here the complete 1,354,226-nt sequence of pSymA. In addition to a large fraction of the genes known to be specifically involved in symbiosis, pSymA contains genes likely to be involved in nitrogen and carbon metabolism, transport, stress, and resistance responses, and other functions that give S. meliloti an advantage in its specialized niche.
ESTHER : Barnett_2001_Proc.Natl.Acad.Sci.U.S.A_98_9883
PubMedSearch : Barnett_2001_Proc.Natl.Acad.Sci.U.S.A_98_9883
PubMedID: 11481432
Gene_locus related to this paper: rhime-RA0091 , rhime-RA0138 , rhime-RA0313 , rhime-RA0428 , rhime-RA0633 , rhime-RA0724 , rhime-RA0950 , rhime-RA0980 , rhime-RA1008 , rhime-RA1044 , rhime-RA1075 , rhime-RA1107

Title : Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana - Theologis_2000_Nature_408_816
Author(s) : Theologis A , Ecker JR , Palm CJ , Federspiel NA , Kaul S , White O , Alonso J , Altafi H , Araujo R , Bowman CL , Brooks SY , Buehler E , Chan A , Chao Q , Chen H , Cheuk RF , Chin CW , Chung MK , Conn L , Conway AB , Conway AR , Creasy TH , Dewar K , Dunn P , Etgu P , Feldblyum TV , Feng J , Fong B , Fujii CY , Gill JE , Goldsmith AD , Haas B , Hansen NF , Hughes B , Huizar L , Hunter JL , Jenkins J , Johnson-Hopson C , Khan S , Khaykin E , Kim CJ , Koo HL , Kremenetskaia I , Kurtz DB , Kwan A , Lam B , Langin-Hooper S , Lee A , Lee JM , Lenz CA , Li JH , Li Y , Lin X , Liu SX , Liu ZA , Luros JS , Maiti R , Marziali A , Militscher J , Miranda M , Nguyen M , Nierman WC , Osborne BI , Pai G , Peterson J , Pham PK , Rizzo M , Rooney T , Rowley D , Sakano H , Salzberg SL , Schwartz JR , Shinn P , Southwick AM , Sun H , Tallon LJ , Tambunga G , Toriumi MJ , Town CD , Utterback T , Van Aken S , Vaysberg M , Vysotskaia VS , Walker M , Wu D , Yu G , Fraser CM , Venter JC , Davis RW
Ref : Nature , 408 :816 , 2000
Abstract : The genome of the flowering plant Arabidopsis thaliana has five chromosomes. Here we report the sequence of the largest, chromosome 1, in two contigs of around 14.2 and 14.6 megabases. The contigs extend from the telomeres to the centromeric borders, regions rich in transposons, retrotransposons and repetitive elements such as the 180-base-pair repeat. The chromosome represents 25% of the genome and contains about 6,850 open reading frames, 236 transfer RNAs (tRNAs) and 12 small nuclear RNAs. There are two clusters of tRNA genes at different places on the chromosome. One consists of 27 tRNA(Pro) genes and the other contains 27 tandem repeats of tRNA(Tyr)-tRNA(Tyr)-tRNA(Ser) genes. Chromosome 1 contains about 300 gene families with clustered duplications. There are also many repeat elements, representing 8% of the sequence.
ESTHER : Theologis_2000_Nature_408_816
PubMedSearch : Theologis_2000_Nature_408_816
PubMedID: 11130712
Gene_locus related to this paper: arath-At1g05790 , arath-At1g09280 , arath-At1g09980 , arath-AT1G29120 , arath-AT1G52695 , arath-AT1G66900 , arath-At1g73750 , arath-AT1G73920 , arath-AT1G74640 , arath-AT1G76140 , arath-AT1G78210 , arath-clh1 , arath-F1O17.3 , arath-F1O17.4 , arath-F1O17.5 , arath-F5I6.3 , arath-At1g52700 , arath-F6D8.27 , arath-F6D8.32 , arath-F9L1.44 , arath-F9P14.11 , arath-F12A4.4 , arath-MES11 , arath-F14G24.2 , arath-F14G24.3 , arath-F14I3.4 , arath-F14O10.2 , arath-F16N3.25 , arath-LCAT2 , arath-At1g34340 , arath-MES15 , arath-CXE6 , arath-ICML1 , arath-At1g72620 , arath-LCAT1 , arath-PLA12 , arath-PLA15 , arath-PLA17 , arath-Q8L7S1 , arath-At1g15070 , arath-SCP2 , arath-SCP4 , arath-SCP5 , arath-SCP18 , arath-SCP32 , arath-SCP44 , arath-SCP45 , arath-SCPL6 , arath-F4IE65 , arath-At1g30370 , arath-T6L1.8 , arath-T6L1.20 , arath-T14P4.6 , arath-MES14 , arath-SCP3 , arath-AXR4 , arath-At1g10040 , arath-ZW18 , arath-pae2 , arath-pae1 , arath-a0a1p8awg3