Palmitoyl-protein_thioesterase

Relationship

Family: Palmitoyl-protein_thioesterase

Block: X

Parent Family: No family

Comment

Palmitoyl protein thioesterases are enzymes (EC 3.1.2.22) that remove thioester-linked fatty acyl groups such as palmitate from modified cysteine residues in proteins or peptides during lysosomal degradation. PPT1 is responsible for the removal of a palmitate group from its substrate proteins, which may include presynaptic proteins like SNAP-25, cysteine string protein (CSP), dynamin, and synaptotagmin. PPT2 removes thioester-linked fatty acyl groups from various substrates including S-palmitoyl-CoA. PPT1 and -2 perform non-redundant roles in lysosomal thioester catabolism. Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene (human-PPT1) causing infantile neuronal ceroid lipofuscinosis. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Insensitive to commonly used serine-modifying reagents phenylmethylsulfonyl fluoride (PMSF) and diisopropylfluorophosphate. See paper of structure of bovine enzyme 1EXW (Das et al. 2000). PPT2 deficiency in a recent transgenic mouse model is associated with a form of neuronal ceroid lipofuscinosis, suggesting that PPT1 and -2 perform non-redundant roles in lysosomal thioester catabolism. Peptide based reversible inhibitors may have a role as chaperone that could facilitate the transport of mutant PPT1 variants to the lysosome where improved enzyme stability may be observed in the lower pH environment Family TE20 in ThYme database

Database

Interpro : IPR002472 Palmitoyl protein thioesterase , IPR030295 Lysosomal thioesterase PPT2 , IPR030294 Palmitoyl-protein thioesterase 1

PIRSF : No PIRSF

Pdoc : No Pdoc

Pfam : PF02089 Palm_thioest

Prints : PR00414

EC Number : 3.1.2.22

Sequences

Peptide in Fasta
Nucleotide in Fasta
Alignment with Multalin Text only
Seed alignment with MAFFT No colour / coloured with Mview
Alignment with MAFFT No colour / coloured with Mview
Dendrogram The dnd file

Structure Name Proteins
1EI9 Bovine Palmitoyl protein thioesterase bovin-ppt
1EH5 Bovine Palmitoyl protein thioesterase complexed with palmitate bovin-ppt
1EXW Palmitoyl protein thioesterase 1 complexed with Hexadecylsulfonyl Fluoride bovin-ppt
3GRO Human palmitoyl-protein thioesterase 1 human-PPT1
1PJA The crystal structure of palmitoyl protein thioesterase-2 reveals the basis for divergent substrate specificities of the two lysosomal thioesterases (PPT1 and PPT2) human-PPT2

Gene_locus Name Species
ailme-d2hxm1 Ailuropoda melanoleuca (Giant panda) Putative uncharacterized protein Ailuropoda melanoleuca
anoga-q7q1p3 Anopheles gambiae str. PEST ensangp00000016617 (fragment) Anopheles gambiae
anoga-q7qdd6 Anopheles gambiae str. PEST ensangp00000021449 (fragment) Anopheles gambiae
arath-AT4G17470 Arabidopsis thaliana (Mouse-ear cress) thioesterase homolog (thioesterase like protein) Arabidopsis thaliana
arath-AT4G17480 Arabidopsis thaliana (Mouse-ear cress) thioesterase homolog (thioesterase like protein) Arabidopsis thaliana
arath-AT4G17483 Arabidopsis thaliana (Mouse-ear cress) hypothetical protein at4g17483 Arabidopsis thaliana
arath-At5g47330 Arabidopsis thaliana (Mouse-ear cress) At5g47330 Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) palmitoyl-protein thioesterase precursor-like Arabidopsis thaliana
arath-At3g60340 Arabidopsis thaliana (Mouse-ear cress) palmitoyl-protein thioesterase precursor-like At3g60340 F27H5_130 Arabidopsis thaliana
arath-Q9LVS4 Arabidopsis thaliana (Mouse-ear cress) palmitoyl-protein thioesterase precursor-like At5g47350 MQL5.21 Arabidopsis thaliana
arath-Q9LVS5 Arabidopsis thaliana (Mouse-ear cress) palmitoyl-protein thioesterase precursor-like At5g47340 Arabidopsis thaliana
aspfu-q4wys3 Aspergillus fumigatus Af293 palmitoyl-protein thioesterase Aspergillus fumigatus Af293
aspor-q2uc65 Aspergillus oryzae palmitoyl protein thioesterase Aspergillus oryzae
bovin-ppt Bos taurus palmitoyl-protein thioesterase mRNA, complete cds Bos taurus
bovin-ppt2 Bos taurus (Bovine) Lysosomal thioesterase PPT2 Bos taurus
braol-q2a9a2 Brassica oleracea (Wild cabbage) palmitoyl protein thioesterase family protein Brassica oleracea
braol-q2a9c0 Brassica oleracea (Wild cabbage) palmitoyl protein thioesterase family protein Brassica oleracea
braol-q2a9i7 Brassica oleracea (Wild cabbage) palmitoyl protein thioesterase family protein Brassica oleracea
braol-q2a9s0 Brassica oleracea (Wild cabbage) palmitoyl protein thioesterase family protein Brassica oleracea
caebr-a8xuh6 Caenorhabditis briggsae hypothetical protein cbg18981 Caenorhabditis briggsae
caeel-F44C4.5 Caenorhabditis elegans similar to palmitoyl-protein thioesterase precursor. ncbi gi: 1226321 PPT1 Caenorhabditis elegans
canal-q5a6l4 Candida albicans SC5314 hypothetical protein ppt2 Candida albicans SC5314
canfa-q5jzr0 Canis familiaris (Dog) palmitoyl-protein thioesterase 1 Canis lupus familiaris
chick-q5zjt3 Gallus gallus (Chicken) hypothetical protein Gallus gallus
cryne-q5kq08 Cryptococcus neoformans var. neoformans JEC21 (and strain B-3501A)palmitoyl-protein thioesterase, putative Cryptococcus neoformans
danre-PPT2 Danio rerio (Zebrafish) (Brachydanio rerio) similar to palmitoyl-protein thioesterase 2 Danio rerio
danre-q4v960 Danio rerio (Zebrafish) (Brachydanio rerio) hypothetical protein zgc:113969 Danio rerio
danre-q6nxd0 Danio rerio (Zebrafish) (Brachydanio rerio) hypothetical protein zgc:77118 Danio rerio
danre-q6pd98 Danio rerio (Zebrafish) (Brachydanio rerio) hypothetical protein zgc:66024 Danio rerio
danre-q7t3c4 Danio rerio (Zebrafish) (Brachydanio rerio) palmitoyl-protein thioesterase Danio rerio
debha-q6bm63 Debaryomyces hansenii (Yeast) (Torulaspora hansenii) Palmitoyl-protein thioesterase Debaryomyces hansenii
dicdi-q54cm0 Dictyostelium discoideum (Slime mold) hypothetical protein Dictyostelium discoideum
dicdi-q54ie5 Dictyostelium discoideum (Slime mold) hypothetical protein Dictyostelium discoideum
dicdi-q54n35 Dictyostelium discoideum (Slime mold) hypothetical protein Dictyostelium discoideum
drome-CG4851 Drosophila melanogaster (Fruit fly) gh17076p cg4851 protein PPT2 Drosophila melanogaster
drome-CG12108 Drosophila melanogaster (Fruit fly) cg12108 protein re03479p PPT1 Drosophila melanogaster
drops-q29gs6 Drosophila pseudoobscura (Fruit fly) ga11401-pa (fragment) Drosophila pseudoobscura
drops-q29m27 Drosophila pseudoobscura (Fruit fly) ga18478-pa (fragment) Drosophila pseudoobscura
emeni-q5bad3 Emericella nidulans (strain FGSC A4 \/ ATCC 38163 \/ CBS 112.46 \/ NRRL 194 \/ M139) (Aspergillus nidulans) hypothetical protein Aspergillus nidulans FGSC A4
gibze-q4ics8 Gibberella zeae (Fusarium graminearum) Palmitoyl-protein hydrolase 1 Gibberella zeae
human-PPT1 Homo sapiens (Human) palmitoyl-protein thioesterase (PPT) CLN1 Homo sapiens
human-PPT2 Homo sapiens (Human) 34.9 kda protein (palmitoyl-protein thioesterase-2) Homo sapiens
lutlo-q5wps7 Lutzomyia longipalpis (Sand fly) 32.2 kda salivary protein Lutzomyia longipalpis
macfa-PPT1 Macaca fascicularis (Crab eating macaque) (Cynomolgus monkey) palmitoyl-protein thioesterase Macaca fascicularis
mouse-ppt Mus musculus (Mouse) palmitoyl-protein thioesterase PPT1 CLN1 Mus musculus
mouse-PPT2 Mus musculus (Mouse) palmitoyl-protein thioesterase 2 Mus musculus
neucr-q7s897 Neurospora crassa hypothetical protein Neurospora crassa
ponab-q5r531 Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii) Uncharacterized protein Pongo abelii
ratno-ppt Rattus norvegicus (Rat) Palmitoyl-protein thioesterase 1 Rattus norvegicus
ratno-PPT2 Rattus norvegicus (Rat) palmitoyl-protein thioesterase 2, EC 3.1.2.22 Rattus norvegicus
schja-q5dbs6 Schistosoma japonicum (Blood fluke, platyhelminth) hypothetical protein Schistosoma japonicum
schpo-SPBC530.12C Schizosaccharomyces pombe (Fission yeast) palmitoyl-protein thioesterase precursor Schizosaccharomyces pombe
tetng-q4szk0 Tetraodon nigroviridis (Spotted green pufferfish) (Chelonodon nigroviridis) hypothetical protein (fragment) Tetraodon nigroviridis
tetts-q23sv8 Tetrahymena thermophila SB210 palmitoyl protein thioesterase containing protein Tetrahymena thermophila SB210
troma-q6r749 Tropaeolum majus (Common nasturtium) putative palmitoyl-protein thioesterase Tropaeolum majus
ustma-q4p2m2 Ustilago maydis (strain 521 \/ FGSC 9021) (Corn smut fungus) hypothetical protein Ustilago maydis 521
xenla-q6gny7 Xenopus laevis (African clawed frog) mgc80782 protein Xenopus laevis
xenla-q6pcj9 Xenopus laevis (African clawed frog) Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) mgc68884 protein Xenopus laevis
xentr-q6deu7 Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) infantile) Xenopus tropicalis
yarli-q6c1r3 Yarrowia lipolytica (Candida lipolytica) function Yarrowia lipolytica

Gene_locus_frgt Name Species
braol-q2a9w9 Brassica oleracea (Wild cabbage) palmitoyl-protein thioesterase-related Brassica oleracea
braol-q2a9x0 Brassica oleracea (Wild cabbage) palmitoyl-protein thioesterase-related Brassica oleracea
chagb-q2h289 Chaetomium globosum CBS 148.51 hypothetical protein Chaetomium globosum CBS 148.51
danre-Q803W4 Danio rerio (Zebrafish) (Brachydanio rerio) similar to palmitoyl-protein thioesterase 2 Danio rerio
gorgo-Q8HZA2 Gorilla gorilla (gorilla) lecithin cholesterol acyltransferase (fragment) Gorilla gorilla gorilla
goshi-O65193 Gossypium hirsutum (Upland cotton) thioesterase homolog (fragment) Gossypium hirsutum
macsp-Q8HZA0 Macaca sp lecithin cholesterol acyltransferase (fragment) Macaca sp.
mouse-q3uw77 Mus musculus (Mouse) clone:9130208c19 ???? product:hypothetical protein, full insert sequence Mus musculus
orysa-Q9AY57 Oryza sativa (Rice) OSJNBA0027P10.1 putative palmitoyl-protein thioesterase Oryza sativa
pantr-Q8HZA3 Pan troglodytes (Chimpanzee) lecithin cholesterol acyltransferase (fragment) Pan troglodytes
sagoe-Q8HZ99 Saguinus oedipus (Cotton-top tamarin) lecithin cholesterol acyltransferase (fragment) Saguinus oedipus
sheep-CLN1 Ovis aries (Sheep) palmitoyl protein thioesterase (fragment) Ovis aries
tetng-q4t383 Tetraodon nigroviridis (Spotted green pufferfish) (Chelonodon nigroviridis) hypothetical protein (fragment) Tetraodon nigroviridis

Substrate Chemical Nomenclature Proteins
Palmitoyl-CoA S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] hexadecanethioate ecoli-ybff

Inhibitor Chemical Nomenclature Proteins
Ezurpimtrostat 4-[4-(tert-butylamino)piperidin-1-yl]-N-[(4-chlorophenyl)methyl]quinolin-2-amine human-PPT1
ABC44 7-((1-Benzylpiperidin-4-yl)methyl)-1,3-dioxohexahydroimidazo[1,5-a]pyrazin-2(3H)-yl 4-(4-methoxyphenyl)piperazine-1-carboxylate human-PPT1
CS38 Methyl 2-[[2-[[5-(1-adamantyl)-4-methyl-1,2,4-triazol-3-yl]sulfanyl]acetyl]amino]benzoate || methyl 2-[[2-[[5-(1-adamantyl)-4-methyl-1,2,4-triazol-3-yl]sulfanyl]acetyl]amino]benzoate human-PPT1
Palmitate hexadecanoic acid bacan-BA4983    human-CES1    bovin-ppt    humla-1lipa    myctu-ym24    chatd-g0s652
HDFP 1-(ethoxy-fluoro-oxidophosphaniumyl)hexadecane human-PREPL
Didemnin-B (2S)-N-[(2S)-1-[[(3R,6S,8S,12S,13S,16S,17S,23S)-13-butan-2-yl-12-hydroxy-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-2,5,7,10,15,19,22-heptaoxo-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxopentan-2-yl]-1-(2-hydroxypropanoyl)-N-methylpyrrolidine-2-carboxamide human-PPT1
1-hexadecanesulfonyl-chloride hexadecane-1-sulfonyl chloride aliac-est2    canru-1lipa
HDSF hexadecane-1-sulfonyl fluoride bovin-ppt

References (18)

Title : Deacylases-structure, function, and relationship to diseases - Wang_2024_FEBS.Lett_598_959
Author(s) : Wang S , Xing X , Ma J , Zheng S , Song Q , Zhang P
Ref : FEBS Letters , 598 :959 , 2024
Abstract :
PubMedSearch : Wang_2024_FEBS.Lett_598_959
PubMedID: 38644468

Title : Thioesterase enzyme families: Functions, structures, and mechanisms - Caswell_2021_Protein.Sci__
Author(s) : Caswell BT , de Carvalho CC , Nguyen H , Roy M , Nguyen T , Cantu DC
Ref : Protein Science , : , 2021
Abstract :
PubMedSearch : Caswell_2021_Protein.Sci__
PubMedID: 34921469

Title : Depalmitoylation by Palmitoyl-Protein Thioesterase 1 in Neuronal Health and Degeneration - Koster_2019_Front.Synaptic.Neurosci_11_25
Author(s) : Koster KP , Yoshii A
Ref : Front Synaptic Neurosci , 11 :25 , 2019
Abstract :
PubMedSearch : Koster_2019_Front.Synaptic.Neurosci_11_25
PubMedID: 31555119
Gene_locus related to this paper: human-PPT1

Title : Temporal Profiling Establishes a Dynamic S-Palmitoylation Cycle - Won_2018_ACS.Chem.Biol_13_1560
Author(s) : Won SJ , Martin BR
Ref : ACS Chemical Biology , 13 :1560 , 2018
Abstract :
PubMedSearch : Won_2018_ACS.Chem.Biol_13_1560
PubMedID: 29733200

Title : Infantile neuronal ceroid lipofuscinosis: follow-up on a Spanish series - Perez-Poyato_2012_Gene_499_297
Author(s) : Perez Poyato MS , Mila Recansens M , Ferrer Abizanda I , Domingo Jimenez R , Lopez Lafuente A , Cusi Sanchez V , Rodriguez-Revenga L , Coll Rosell MJ , Gort L , Poo Arguelles P , Pineda Marfa M
Ref : Gene , 499 :297 , 2012
Abstract :
PubMedSearch : Perez-Poyato_2012_Gene_499_297
PubMedID: 22387303
Gene_locus related to this paper: human-PPT1

Title : ThYme: a database for thioester-active enzymes - Cantu_2011_Nucleic.Acids.Res_39_D342
Author(s) : Cantu DC , Chen Y , Lemons ML , Reilly PJ
Ref : Nucleic Acids Research , 39 :D342 , 2011
Abstract :
PubMedSearch : Cantu_2011_Nucleic.Acids.Res_39_D342
PubMedID: 21045059

Title : Palmitoyl:protein thioesterase (PPT1) inhibitors can act as pharmacological chaperones in infantile Batten disease - Dawson_2010_Biochem.Biophys.Res.Commun_395_66
Author(s) : Dawson G , Schroeder C , Dawson PE
Ref : Biochemical & Biophysical Research Communications , 395 :66 , 2010
Abstract :
PubMedSearch : Dawson_2010_Biochem.Biophys.Res.Commun_395_66
PubMedID: 20346914
Gene_locus related to this paper: human-PPT1

Title : Thioesterases: a new perspective based on their primary and tertiary structures. - Cantu_2010_Protein.Sci_19_1281
Author(s) : Cantu DC , Chen Y , Reilly PJ
Ref : Protein Science , 19 :1281 , 2010
Abstract :
PubMedSearch : Cantu_2010_Protein.Sci_19_1281
PubMedID: 20506386

Title : The crystal structure of palmitoyl protein thioesterase-2 (PPT2) reveals the basis for divergent substrate specificities of the two lysosomal thioesterases, PPT1 and PPT2 - Calero_2003_J.Biol.Chem_278_37957
Author(s) : Calero G , Gupta P , Nonato MC , Tandel S , Biehl ER , Hofmann SL , Clardy J
Ref : Journal of Biological Chemistry , 278 :37957 , 2003
Abstract :
PubMedSearch : Calero_2003_J.Biol.Chem_278_37957
PubMedID: 12855696
Gene_locus related to this paper: human-PPT2

Title : Adult neuronal ceroid lipofuscinosis with palmitoyl-protein thioesterase deficiency: first adult-onset patients of a childhood disease - van Diggelen_2001_Ann.Neurol_50_269
Author(s) : van Diggelen OP , Thobois S , Tilikete C , Zabot MT , Keulemans JL , van Bunderen PA , Taschner PE , Losekoot M , Voznyi YV
Ref : Annals of Neurology , 50 :269 , 2001
Abstract :
PubMedSearch : van Diggelen_2001_Ann.Neurol_50_269
PubMedID: 11506414
Gene_locus related to this paper: human-PPT1

Title : The crystal structure of palmitoyl protein thioesterase 1 and the molecular basis of infantile neuronal ceroid lipofuscinosis - Bellizzi_2000_Proc.Natl.Acad.Sci.U.S.A_97_4573
Author(s) : Bellizzi JJ, 3rd , Widom J , Kemp C , Lu JY , Das AK , Hofmann SL , Clardy J
Ref : Proc Natl Acad Sci U S A , 97 :4573 , 2000
Abstract :
PubMedSearch : Bellizzi_2000_Proc.Natl.Acad.Sci.U.S.A_97_4573
PubMedID: 10781062
Gene_locus related to this paper: bovin-ppt , human-PPT1

Title : Structural basis for the insensitivity of a serine enzyme (palmitoyl-protein thioesterase) to phenylmethylsulfonyl fluoride - Das_2000_J.Biol.Chem_275_23847
Author(s) : Das AK , Bellizzi JJ, 3rd , Tandel S , Biehl E , Clardy J , Hofmann SL
Ref : Journal of Biological Chemistry , 275 :23847 , 2000
Abstract :
PubMedSearch : Das_2000_J.Biol.Chem_275_23847
PubMedID: 10801859
Gene_locus related to this paper: bovin-ppt2 , human-PPT1

Title : Mutations in the palmitoyl-protein thioesterase gene (PPT\; CLN1) causing juvenile neuronal ceroid lipofuscinosis with granular osmiophilic deposits - Mitchison_1998_Hum.Mol.Genet_7_291
Author(s) : Mitchison HM , Hofmann SL , Becerra CH , Munroe PB , Lake BD , Crow YJ , Stephenson JB , Williams RE , Hofman IL , Taschner PE , Martin JJ , Philippart M , Andermann E , Andermann F , Mole SE , Gardiner RM , O'Rawe AM
Ref : Hum Mol Genet , 7 :291 , 1998
Abstract :
PubMedSearch : Mitchison_1998_Hum.Mol.Genet_7_291
PubMedID: 9425237
Gene_locus related to this paper: human-PPT1

Title : Molecular genetics of palmitoyl-protein thioesterase deficiency in the U.S - Das_1998_J.Clin.Invest_102_361
Author(s) : Das AK , Becerra CH , Yi W , Lu JY , Siakotos AN , Wisniewski KE , Hofmann SL
Ref : Journal of Clinical Investigation , 102 :361 , 1998
Abstract :
PubMedSearch : Das_1998_J.Clin.Invest_102_361
PubMedID: 9664077
Gene_locus related to this paper: human-PPT1

Title : A novel insertion mutation (A169i) in the CLN1 gene is associated with infantile neuronal ceroid lipofuscinosis in an Italian patient - Santorelli_1998_Biochem.Biophys.Res.Commun_245_519
Author(s) : Santorelli FM , Bertini E , Petruzzella V , Di Capua M , Calvieri S , Gasparini P , Zeviani M
Ref : Biochemical & Biophysical Research Communications , 245 :519 , 1998
Abstract :
PubMedSearch : Santorelli_1998_Biochem.Biophys.Res.Commun_245_519
PubMedID: 9571187
Gene_locus related to this paper: human-PPT1

Title : Didemnin binds to the protein palmitoyl thioesterase responsible for infantile neuronal ceroid lipofuscinosis - Crews_1996_Proc.Natl.Acad.Sci.U.S.A_93_4316
Author(s) : Crews CM , Lane WS , Schreiber SL
Ref : Proc Natl Acad Sci U S A , 93 :4316 , 1996
Abstract :
PubMedSearch : Crews_1996_Proc.Natl.Acad.Sci.U.S.A_93_4316
PubMedID: 8633062
Gene_locus related to this paper: human-PPT1

Title : Lipid thioesters derived from acylated proteins accumulate in infantile neuronal ceroid lipofuscinosis: correction of the defect in lymphoblasts by recombinant palmitoyl-protein thioesterase - Lu_1996_Proc.Natl.Acad.Sci.U.S.A_93_10046
Author(s) : Lu JY , Verkruyse LA , Hofmann SL
Ref : Proc Natl Acad Sci U S A , 93 :10046 , 1996
Abstract :
PubMedSearch : Lu_1996_Proc.Natl.Acad.Sci.U.S.A_93_10046
PubMedID: 8816748
Gene_locus related to this paper: human-PPT1

Title : Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis - Vesa_1995_Nature_376_584
Author(s) : Vesa J , Hellsten E , Verkruyse LA , Camp LA , Rapola J , Santavuori P , Hofmann SL , Peltonen L
Ref : Nature , 376 :584 , 1995
Abstract :
PubMedSearch : Vesa_1995_Nature_376_584
PubMedID: 7637805
Gene_locus related to this paper: human-PPT1