arath-SCP33

 
Arabidopsis thaliana (Mouse-ear cress), Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress) serine carboxypeptidase II-like protein At3g17180

Relationship
Block X
Arabidopsis thaliana position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Arabidopsis: N E > Arabidopsis thaliana: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : AB026636
2 UniProt : D7L6P5, Q9LSM9
2 UniProtTrembl : Q9LSM9, D7L6P5
2 Interpro : Q9LSM9, D7L6P5
2 Prodom : Q9LSM9, D7L6P5
2 Pfam : Q9LSM9, D7L6P5
2 PIRSF : Q9LSM9, D7L6P5
2 SUPERFAM : Q9LSM9, D7L6P5
2 QuickSwissBlast : Q9LSM9, D7L6P5
1 Tair database : At3g17180
 
Sequence
Graphical view for this peptide sequence: arath-SCP33
Colored MSA for Carboxypeptidase_S10 (raw)
MKKQKFLLIISLLILLSLLHQDYHIEAQNSDKVVNLPEQPLNPKISHFSG
YVNVNQENTRSLFFWFFEALSESPSTRPLVLWLNGGPGCSSIGYGAASEL
GPFRVVENGTSLSFNQYSWVQEANMLFLESPVGVGFSYTNSSSDLENLND
AFVAEDAYNFMVAWFARYPQYKSRDFFIAGESYAGHYSPQLAELIYDRNK
VQPKDSFINLKGFIVGNPLTDDEYDNKGILEYAWSHAVISDHLYDSAKHN
CDFKSSNWSEPCNVAMNTVFTKYKEIDIYNIYAPKCISNSSSGASYLGFG
VNDKSPAVKDWFKRVRWFEGYDPCYSNYAEEYFNRVDVRLSLHATTRNVA
RWKVCNDSILQTYHFTVSSMLPTYSKLIKAGLKIWVYSGDADGRVPVIGS
RYCVEALGISVKSEWRSWFHNHQVGGRITEYEGGLTFVTVRGAGHLVPLN
KPEEALALFRSFLNGQELPSSP
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKKQKFLLIISLLILLSLLHQDYHIEAQNSDKVVNLPEQPLNPKISHFSG
YVNVNQENTRSLFFWFFEALSESPSTRPLVLWLNGGPGCSSIGYGAASEL
GPFRVVENGTSLSFNQYSWVQEANMLFLESPVGVGFSYTNSSSDLENLND
AFVAEDAYNFMVAWFARYPQYKSRDFFIAGESYAGHYSPQLAELIYDRNK
VQPKDSFINLKGFIVGNPLTDDEYDNKGILEYAWSHAVISDHLYDSAKHN
CDFKSSNWSEPCNVAMNTVFTKYKEIDIYNIYAPKCISNSSSGASYLGFG
VNDKSPAVKDWFKRVRWFEGYDPCYSNYAEEYFNRVDVRLSLHATTRNVA
RWKVCNDSILQTYHFTVSSMLPTYSKLIKAGLKIWVYSGDADGRVPVIGS
RYCVEALGISVKSEWRSWFHNHQVGGRITEYEGGLTFVTVRGAGHLVPLN
KPEEALALFRSFLNGQELPSSP

no DNA




References
    Title: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
    Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J and Guo YL <20 more author(s)>
    Ref: Nat Genet, 43:476, 2011 : PubMed

            

    Title: An expression and bioinformatics analysis of the Arabidopsis serine carboxypeptidase-like gene family
    Fraser CM, Rider LW, Chapple C
    Ref: Plant Physiol, 138:1136, 2005 : PubMed

            

    Title: Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones
    Sato S, Nakamura Y, Kaneko T, Katoh T, Asamizu E, Tabata S
    Ref: DNA Research, 7:131, 2000 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer