Gene_Locus Report

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Gene_locus Report for: chick-cb043

Gallus gallus (Chicken) UPF0554 protein C2orf43 LDAH homolog

Relationship
Family|LIDHydrolase
Block| X
Position in NCBI Life Tree|Gallus gallus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Sauropsida: N E > Sauria: N E > Archelosauria: N E > Archosauria: N E > Dinosauria: N E > Saurischia: N E > Theropoda: N E > Coelurosauria: N E > Aves: N E > Neognathae: N E > Galloanserae: N E > Galliformes: N E > Phasianidae: N E > Phasianinae: N E > Gallus: N E > Gallus gallus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AJ851423
2 UniProt : Q5F477, F1N977
2 UniProt : Q5F477, F1N977
2 Interpro : Q5F477, F1N977
2 Prodom : Q5F477, F1N977
2 Pfam : Q5F477, F1N977
2 PIRSF : Q5F477, F1N977
2 SUPERFAM : Q5F477, F1N977
Sequence
Graphical view for this peptide sequence: chick-cb043
Colored MSA for LIDHydrolase (raw)
MRSVSEEPVPLHEEFIYCCGAATHVLKCGPWKDLSKDESKNLPRLLFMII
PGNPGLAGYYRTFIKALYCGLNQQYPVWVVSHAGHCKPPSGMEMIEDTDI
KELEDVFGLNGQVEHKLNFLKKNVSKDIKLVLIAHSIGCYITLEMMKRAS
ELQVLRSVLLFPTIERMAQSPQGKLMTPLLCKLRYALYMPVYLLSFLPEG
VKASLVRFALRGMKTCDESSITTSVNLFSVDCIANILYMASQEMMKVVER
DSTTIKQNLKKLIFYYGTGDSWCPQNYYDEIKMDFPDGDIRLCEKGLRHA
FVLDASKEMAAMITDWLRDDLTKL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MRSVSEEPVPLHEEFIYCCGAATHVLKCGPWKDLSKDESKNLPRLLFMII
PGNPGLAGYYRTFIKALYCGLNQQYPVWVVSHAGHCKPPSGMEMIEDTDI
KELEDVFGLNGQVEHKLNFLKKNVSKDIKLVLIAHSIGCYITLEMMKRAS
ELQVLRSVLLFPTIERMAQSPQGKLMTPLLCKLRYALYMPVYLLSFLPEG
VKASLVRFALRGMKTCDESSITTSVNLFSVDCIANILYMASQEMMKVVER
DSTTIKQNLKKLIFYYGTGDSWCPQNYYDEIKMDFPDGDIRLCEKGLRHA
FVLDASKEMAAMITDWLRDDLTKL


References
    Title: Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis
    Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D and Buerstedde JM <4 more author(s)>
    Ref: Genome Biol, 6:R6, 2005 : PubMed

            

    Title: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    Hillier LW, Miller W, Birney E, Warren W, Hardison RC, Ponting CP, Bork P, Burt DW, Groenen MA and Wilson RK <164 more author(s)>
    Ref: Nature, 432:695, 2004 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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