Gene_locus Report for: chick-q5f3h8 Gallus gallus (Chicken) hypothetical protein
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Sauropsida: N E > Sauria: N E > Archelosauria: N E > Archosauria: N E > Dinosauria: N E > Saurischia: N E > Theropoda: N E > Coelurosauria: N E > Aves: N E > Neognathae: N E > Galloanserae: N E > Galliformes: N E > Phasianidae: N E > Phasianinae: N E > Gallus: N E > Gallus gallus: N E ABHD6-Lip :
chick-e1c7p7 Gallus gallus (Chicken) Uncharacterized protein .
ABHD8 :
chick-a0a1d5pl11 Gallus gallus (Chicken). Abhydrolase domain containing 8 .
ABHD10 :
chick-a0a1d5pj73 Gallus gallus (Chicken). Abhydrolase domain containing 10 .
ABHD11-Acetyl_transferase :
chick-f1nxu6 Gallus gallus (Chicken). AB hydrolase-1 domain-containing protein .
ABHD12-PHARC :
chick-q5zin0 Gallus gallus (Chicken) hypothetical protein .
ABHD13-BEM46 :
chick-q5zjl8 Gallus gallus (Chicken)Alpha/beta hydrolase domain-containing protein 13 .
ABHD17-depalmitoylase :
chick-q5zj01 Gallus gallus (Chicken) hypothetical protein AB17B .
abh_upf0017 :
chick-f1ntp8 Gallus gallus (Chicken) Uncharacterized protein .
ACHE :
chick-ACHE Gallus gallus mRNA for acetylcholinesterase .
Acidic_Lipase :
chick-e1bwz0 Gallus gallus (Chicken) Lipase ,
chick-e1bwz1 Gallus gallus (Chicken) Lipase ,
chick-f1nj68 Gallus gallus (Chicken) Lipase LIPML1 ,
chick-f1njs4 Gallus gallus (Chicken) Lipase LIPML2 ,
chick-f1njs5 Gallus gallus (Chicken) Lipase ,
chick-f1p3j5 Gallus gallus (Chicken) Lipase .
ACPH_Peptidase_S9 :
chick-q5zjb6 Gallus gallus (Chicken) hypothetical protein .
Arb2_FAM172A :
chick-f172a Gallus gallus (Chicken). Protein FAM172A .
Arylacetamide_deacetylase :
chick-a0a1d5pzg7 Gallus gallus (Chicken). Uncharacterized protein ,
chick-f1nbc2 Gallus gallus (Chicken). Uncharacterized protein ,
chick-f1nf25 Gallus gallus (Chicken). Uncharacterized protein ,
chick-f1nly5 Gallus gallus (Chicken). Uncharacterized protein ,
chick-f1p4h5 Gallus gallus (Chicken). Uncharacterized protein .
BCHE :
chick-BCHE Gallus gallus mRNA for butyrylcholinesterase (BCHE gene) .
Carboxypeptidase_S10 :
chick-q5f3w4 Gallus gallus (Chicken) hypothetical protein ,
chick-q5zij5 Gallus gallus (Chicken) hypothetical protein .
Carb_B_Chordata :
chick-a0a1d5pmd9 Gallus gallus (Chicken). Carboxylic ester hydrolase ,
chick-e1byn1 Gallus gallus (Chicken) Carboxylic ester hydrolase ,
chick-f1nyt3 Gallus gallus (Chicken) Uncharacterized protein ,
chick-f1nk87 Gallus gallus (Chicken) Uncharacterized protein .
CGI-58_ABHD5_ABHD4 :
chick-b3tzb3 Gallus gallus (Chicken) Uncharacterized protein .
Cholesterol_esterase :
chick-e1bvq6 Gallus gallus (Chicken) Uncharacterized protein .
CMBL :
chick-a0a1d5nwc0 Gallus gallus (Chicken). DLH domain-containing protein ,
chick-e1bxs8 Gallus gallus (Chicken); Bambusicola thoracicus (Chinese bamboo-partridge) (Perdix thoracica). Carboxymethylenebutenolidase homolog .
DPP4N_Peptidase_S9 :
chick-f1ndp3 Gallus gallus (Chicken) Uncharacterized protein ,
chick-f1nep4 Gallus gallus (Chicken) Uncharacterized protein ,
chick-f1nmx9 Gallus gallus (Chicken) Uncharacterized protein ,
chick-f1nvg7 Gallus gallus (Chicken) Uncharacterized protein ,
chick-f1p1l1 Gallus gallus (Chicken) Uncharacterized protein ,
chick-q5zi81 Gallus gallus (Chicken) hypothetical protein .
Duf_676 :
chick-f1p508 Gallus gallus (Chicken) Uncharacterized protein .
Epoxide_hydrolase :
chick-q45qt1 Gallus gallus (Chicken) soluble epoxide hydrolase .
Hepatic_Lipase :
chick-f1nzi7 Gallus gallus (Chicken). Lipase C, hepatic type .
Kynurenine-formamidase :
chick-e1c2h6 Gallus gallus (Chicken). N-formylkynurenine formamidase .
LIDHydrolase :
chick-cb043 Gallus gallus (Chicken) UPF0554 protein C2orf43 LDAH homolog .
Lipase_3 :
chick-f1njg6 Gallus gallus (Chicken) Uncharacterized protein .
Lipoprotein_Lipase :
chick-lipli Gallus gallus mRNA for lipoprotein lipase .
Maspardin-ACP33-SPG21_like :
chick-e1c0z8 Gallus gallus (Chicken) Uncharacterized protein .
Monoglyceridelipase_lysophospholip :
chick-a0a1d5pk92 Gallus gallus (Chicken). Uncharacterized protein .
Ndr_family :
chick-f1ncz8 Gallus gallus (Chicken) Uncharacterized protein ,
chick-f1nrq2 Gallus gallus (Chicken) NDRG family member 3 Uncharacterized protein ,
chick-e1byd4 Gallus gallus (Chicken) Uncharacterized protein .
Neuroligin :
chick-d3wgl5 Gallus gallus (Chicken) Neuroligin 4 isoform ,
chick-nlgn1 Gallus gallus (Chicken) neuroligin 1 isoform aab ,
chick-NLGN3 Gallus gallus (Chicken) Neuroligin 3 .
NLS3-Tex30 :
chick-e1bsm0 Gallus gallus (Chicken) Uncharacterized protein ,
chick-h9l0k6 Gallus gallus (Chicken) Uncharacterized protein .
PAF-Acetylhydrolase :
chick-pafa Chick plasma PAF acetylhydrolase .
Palmitoyl-protein_thioesterase :
chick-q5zjt3 Gallus gallus (Chicken) hypothetical protein .
Pancreatic_lipase :
chick-f1p5k3 Gallus gallus (Chicken). Pancreatic lipase .
PC-sterol_acyltransferase :
chick-lcat Gallus gallus (Chicken) acyltransferase) (fragment) .
Pectinacetylesterase-Notum :
chick-f1nby4 Gallus gallus (Chicken) Uncharacterized protein .
Phospholipase :
chick-f1nm35 Gallus gallus (Chicken). Phospholipase A1 member A ,
chick-f1p2g7 Gallus gallus (Chicken). Lipase H ,
chick-f1nd96 Gallus gallus (Chicken). Lipase domain-containing protein .
PPase_methylesterase_euk :
chick-q5zhm0 Gallus gallus (Chicken) hypothetical protein .
Prolylcarboxypeptidase :
chick-e1bz81 Gallus gallus (Chicken) dipeptidyl peptidase 2 isoform X1 ,
chick-f1nwf2 Gallus gallus (Chicken) Uncharacterized protein .
S9N_PPCE_Peptidase_S9 :
chick-q5zmi7 Gallus gallus (Chicken) hypothetical protein .
S9N_PREPL_Peptidase_S9 :
chick-q5zkl5 Gallus gallus (Chicken) hypothetical protein .
SERHL :
chick-f1njk4 Gallus gallus (Chicken) Uncharacterized protein .
Thioesterase :
chick-fas Gallus gallus (Chicken) FAS Thioesterase domain .
Thyroglobulin :
chick-thyro Gallus gallus (Chicken) Thyroglobulin .
Valacyclovir-hydrolase :
chick-f1p4c6 Gallus gallus (Chicken) Uncharacterized protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: chick-q5f3h8 Colored MSA for Lipase_3 (raw)
MCCCIVQDDDHRVAFTSIAELFRAYFSDTDLVPSDIAAGLILLHQEQDKM
ESCPKEPEEVLCHSPSSLVADDLDIELENAAHYMLFAAAAYGWPYYIYTN
PFTALCKLNGDCCRSRPEDSDITGSDRRNFHFGSILRITGLQYRDFIHIS
FHNKIYEIPFFVALDHKKEAIVVAVRGTLSFEDILTDLSADCEDLTLEDV
LENGFVHKGITQAANYIYQKLINDGILNQAFTIASEYKLVIVGHSLGGGT
ASVLAIMLRNSFPTLKCYAFSPPGGLLSKTLAEYSKRFIVSIILGKDLVA
RLSMPNMEDLKRRIVRIVANCNRPKYQILLRGCWYEVFGGDPDNFPTELD
GRNDDALTQPLLAEESLMVHRSPSYNALDGEPHLNSPPQYPRLYLPGKII
HIVEECSSRRLCSSDIKYSANWSNETVFSSILISPKMITDHMPDVVLNAL
NSLSQEHRSCISCQTK
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M C C C I V Q D D D H R V A F T S I A E L F R A Y F S D T D L V P S D I A A G L I L L H Q E Q D K M E S C P K E P E E V L C H S P S S L V A D D L D I E L E N A A H Y M L F A A A A Y G W P Y Y I Y T N P F T A L C K L N G D C C R S R P E D S D I T G S D R R N F H F G S I L R I T G L Q Y R D F I H I S F H N K I Y E I P F F V A L D H K K E A I V V A V R G T L S F E D I L T D L S A D C E D L T L E D V L E N G F V H K G I T Q A A N Y I Y Q K L I N D G I L N Q A F T I A S E Y K L V I V G H S L G G G T A S V L A I M L R N S F P T L K C Y A F S P P G G L L S K T L A E Y S K R F I V S I I L G K D L V A R L S M P N M E D L K R R I V R I V A N C N R P K Y Q I L L R G C W Y E V F G G D P D N F P T E L D G R N D D A L T Q P L L A E E S L M V H R S P S Y N A L D G E P H L N S P P Q Y P R L Y L P G K I I H I V E E C S S R R L C S S D I K Y S A N W S N E T V F S S I L I S P K M I T D H M P D V V L N A L N S L S Q E H R S C I S C Q T K
References
Title: Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysisCaldwell RB , Kierzek AM , Arakawa H , Bezzubov Y , Zaim J , Fiedler P , Kutter S , Blagodatski A , Kostovska D and Buerstedde JM <4 more author(s)> Caldwell RB , Kierzek AM , Arakawa H , Bezzubov Y , Zaim J , Fiedler P , Kutter S , Blagodatski A , Kostovska D , Koter M , Plachy J , Carninci P , Hayashizaki Y , Buerstedde JM (- 4) Ref: Genome Biol, 6 :R6, 2005 : PubMed Abstract ESTHER: Caldwell_2005_Genome.Biol_6_R6 PubMedSearch: Caldwell 2005 Genome.Biol 6 R6 PubMedID: 15642098 Gene_locus related to this paper: chick-b3tzb3 ,
chick-cb043 ,
chick-f1p3j5 ,
chick-q5f3h8 ,
chick-q5f3w4 ,
chick-q5zhm0 ,
chick-q5zi81 ,
chick-q5zij5 ,
chick-q5zin0 ,
chick-q5zj01 ,
chick-q5zjb6 ,
chick-q5zjl8 ,
chick-q5zjt3 ,
chick-q5zkl5 ,
chick-q5zmi7 ,
chick-f172a Abstract
A large number of cDNA inserts were sequenced from a high-quality library of chicken bursal lymphocyte cDNAs. Comparisons to public gene databases indicate that the cDNA collection represents more than 2,000 new, full-length transcripts. This resource defines the structure and the coding potential of a large fraction of B-cell specific and housekeeping genes whose function can be analyzed by disruption in the chicken DT40 B-cell line.
Title: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolutionHillier LW , Miller W , Birney E , Warren W , Hardison RC , Ponting CP , Bork P , Burt DW , Groenen MA and Wilson RK <164 more author(s)> Hillier LW , Miller W , Birney E , Warren W , Hardison RC , Ponting CP , Bork P , Burt DW , Groenen MA , Delany ME , Dodgson JB , Chinwalla AT , Cliften PF , Clifton SW , Delehaunty KD , Fronick C , Fulton RS , Graves TA , Kremitzki C , Layman D , Magrini V , McPherson JD , Miner TL , Minx P , Nash WE , Nhan MN , Nelson JO , Oddy LG , Pohl CS , Randall-Maher J , Smith SM , Wallis JW , Yang SP , Romanov MN , Rondelli CM , Paton B , Smith J , Morrice D , Daniels L , Tempest HG , Robertson L , Masabanda JS , Griffin DK , Vignal A , Fillon V , Jacobbson L , Kerje S , Andersson L , Crooijmans RP , Aerts J , van der Poel JJ , Ellegren H , Caldwell RB , Hubbard SJ , Grafham DV , Kierzek AM , McLaren SR , Overton IM , Arakawa H , Beattie KJ , Bezzubov Y , Boardman PE , Bonfield JK , Croning MD , Davies RM , Francis MD , Humphray SJ , Scott CE , Taylor RG , Tickle C , Brown WR , Rogers J , Buerstedde JM , Wilson SA , Stubbs L , Ovcharenko I , Gordon L , Lucas S , Miller MM , Inoko H , Shiina T , Kaufman J , Salomonsen J , Skjoedt K , Ka-Shu Wong G , Wang J , Liu B , Yu J , Yang H , Nefedov M , Koriabine M , deJong PJ , Goodstadt L , Webber C , Dickens NJ , Letunic I , Suyama M , Torrents D , von Mering C , Zdobnov EM , Makova K , Nekrutenko A , Elnitski L , Eswara P , King DC , Yang S , Tyekucheva S , Radakrishnan A , Harris RS , Chiaromonte F , Taylor J , He J , Rijnkels M , Griffiths-Jones S , Ureta-Vidal A , Hoffman MM , Severin J , Searle SM , Law AS , Speed D , Waddington D , Cheng Z , Tuzun E , Eichler E , Bao Z , Flicek P , Shteynberg DD , Brent MR , Bye JM , Huckle EJ , Chatterji S , Dewey C , Pachter L , Kouranov A , Mourelatos Z , Hatzigeorgiou AG , Paterson AH , Ivarie R , Brandstrom M , Axelsson E , Backstrom N , Berlin S , Webster MT , Pourquie O , Reymond A , Ucla C , Antonarakis SE , Long M , Emerson JJ , Betran E , Dupanloup I , Kaessmann H , Hinrichs AS , Bejerano G , Furey TS , Harte RA , Raney B , Siepel A , Kent WJ , Haussler D , Eyras E , Castelo R , Abril JF , Castellano S , Camara F , Parra G , Guigo R , Bourque G , Tesler G , Pevzner PA , Smit A , Fulton LA , Mardis ER , Wilson RK (- 164) Ref: Nature, 432 :695, 2004 : PubMed Abstract ESTHER: Hillier_2004_Nature_432_695 PubMedSearch: Hillier 2004 Nature 432 695 PubMedID: 15592404 Gene_locus related to this paper: chick-a0a1d5pmd9 ,
chick-b3tzb3 ,
chick-BCHE ,
chick-cb043 ,
chick-d3wgl5 ,
chick-e1bsm0 ,
chick-e1bvq6 ,
chick-e1bwz0 ,
chick-e1bwz1 ,
chick-e1byn1 ,
chick-e1bz81 ,
chick-e1c0z8 ,
chick-e1c7p7 ,
chick-f1nby4 ,
chick-f1ncz8 ,
chick-f1ndp3 ,
chick-f1nep4 ,
chick-f1nj68 ,
chick-f1njg6 ,
chick-f1njk4 ,
chick-f1njs4 ,
chick-f1njs5 ,
chick-f1nk87 ,
chick-f1nmx9 ,
chick-f1ntp8 ,
chick-f1nvg7 ,
chick-f1nwf2 ,
chick-f1p1l1 ,
chick-f1p3j5 ,
chick-f1p4c6 ,
chick-f1p508 ,
chick-fas ,
chick-h9l0k6 ,
chick-nlgn1 ,
chick-NLGN3 ,
chick-q5f3h8 ,
chick-q5zhm0 ,
chick-q5zi81 ,
chick-q5zij5 ,
chick-q5zin0 ,
chick-thyro ,
chick-f1nrq2 ,
chick-e1byd4 ,
chick-e1c2h6 ,
chick-a0a1d5pk92 ,
chick-a0a1d5pzg7 ,
chick-f1nbc2 ,
chick-f1nf25 ,
chick-f1nly5 ,
chick-f1p4h5 ,
chick-f1nzi7 ,
chick-f1p5k3 ,
chick-f1nm35 ,
chick-a0a1d5pl11 ,
chick-a0a1d5pj73 ,
chick-f1nxu6 ,
chick-a0a1d5nwc0 ,
chick-e1bxs8 ,
chick-f1p2g7 ,
chick-f1nd96 Abstract
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first non-mammalian amniote to have its genome sequenced, the draft sequence of its genome--composed of approximately one billion base pairs of sequence and an estimated 20,000-23,000 genes--provides a new perspective on vertebrate genome evolution, while also improving the annotation of mammalian genomes. For example, the evolutionary distance between chicken and human provides high specificity in detecting functional elements, both non-coding and coding. Notably, many conserved non-coding sequences are far from genes and cannot be assigned to defined functional classes. In coding regions the evolutionary dynamics of protein domains and orthologous groups illustrate processes that distinguish the lineages leading to birds and mammals. The distinctive properties of avian microchromosomes, together with the inferred patterns of conserved synteny, provide additional insights into vertebrate chromosome architecture.
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