Gene_Locus Report

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Gene_locus Report for: psesy-SYRE

Pseudomonas syringae (pv. syringae) syringomycin synthetase Thioesterase domain

Comment
Q4ZT75 strain b728a Feil et al


Relationship
Family|Thioesterase
Block| X
Position in NCBI Life Tree|Pseudomonas syringae
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Pseudomonadales: N E > Pseudomonadaceae: N E > Pseudomonas: N E > Pseudomonas syringae group: N E > Pseudomonas syringae group genomosp. 1: N E > Pseudomonas syringae: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AF047828, CP000075
1 UniProt : Q4ZT75
2 UniProt : O85168, Q4ZT75
2 Interpro : O85168, Q4ZT75
2 Prodom : O85168, Q4ZT75
2 Pfam : O85168, Q4ZT75
2 PIRSF : O85168, Q4ZT75
2 SUPERFAM : O85168, Q4ZT75
Sequence
Graphical view for this peptide sequence: psesy-SYRE
Colored MSA for Thioesterase (raw)
RPLFLVHPLGGEVQYVRDLAAAIDPQVPLYGLAASGLAAGETPLYEVPAM
AARYLAAIRQVQPKGPYRIGGWSAGGLIAYEMARQLQSSGEKLEFLGIID
TSARLEQQAPEALSEGQFLMDWLPEQLDPEVFRQLTELAGTDAIDEMLAL
CMAHRLLPEELPQDVDATLLRSHLAVAHATHIAIGNYVSPPAPLTVTLFT
ASAEERDDPLLGWTALLDSPVNVTELPGTHETLVRAPQVSALGQAISRAL
NKEPNQEPRREEVLRSITAPAE
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

RPLFLVHPLGGEVQYVRDLAAAIDPQVPLYGLAASGLAAGETPLYEVPAM
AARYLAAIRQVQPKGPYRIGGWSAGGLIAYEMARQLQSSGEKLEFLGIID
TSARLEQQAPEALSEGQFLMDWLPEQLDPEVFRQLTELAGTDAIDEMLAL
CMAHRLLPEELPQDVDATLLRSHLAVAHATHIAIGNYVSPPAPLTVTLFT
ASAEERDDPLLGWTALLDSPVNVTELPGTHETLVRAPQVSALGQAISRAL
NKEPNQEPRREEVLRSITAPAE


References
    Title: Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000
    Feil H, Feil WS, Chain P, Larimer F, DiBartolo G, Copeland A, Lykidis A, Trong S, Nolan M and Lindow SE <10 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 102:11064, 2005 : PubMed

            

    Title: The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
    Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, Durkin AS and Collmer A <34 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 100:10181, 2003 : PubMed

            

    Title: Characterization of the syringomycin synthetase gene cluster. A link between prokaryotic and eukaryotic peptide synthetases
    Guenzi E, Galli G, Grgurina I, Gross DC, Grandi G
    Ref: Journal of Biological Chemistry, 273:32857, 1998 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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