Gene_Locus Report

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Gene_locus Report for: xanax-XAC2393

Xanthomonas axonopodis; Xanthomonas campestris; Xanthomonas fuscans XAC2393 gene

Comment
Other strains: Xanthomonas axonopodis pv. citri str.; Xanthomonas campestris pv. musacearum NCPPB 2005, Xanthomonas axonopodis pv. dieffenbachiae; Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535


Relationship
Family|BD-FAE
Block| H
Position in NCBI Life Tree|Xanthomonas axonopodis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Xanthomonadales: N E > Xanthomonadaceae: N E > Xanthomonas: N E > Xanthomonas axonopodis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
>3 Genbank links 4 more: NC_003919, AE011876, WP_010382336.1
1 UniProt : D4T7Y4
1 Ncbi-nid : 21240774
1 Ncbi-pid : 21243127
2 UniProt : Q8PJY4, D4T7Y4
2 Interpro : Q8PJY4, D4T7Y4
2 Pfam : Q8PJY4, D4T7Y4
2 PIRSF : Q8PJY4, D4T7Y4
2 SUPERFAM : Q8PJY4, D4T7Y4
Sequence
Graphical view for this peptide sequence: xanax-XAC2393
Colored MSA for BD-FAE (raw)
MGDTASGAARAPYLHSIGVCRAGSSCTCLRRAIAANSRRLRIGCEPDSGE
RCRLATVSSALASLLRPYLIPLPAHLTILPMPSRASRWFRPAILLLGSLT
MTACSSVFFGGINAASGRSGIVEHRDQVFDPAHGLALDVYQPRGAVDAPM
VVFFYGGTWKRGSRANYRWVGRALARQGVVAMVADYRKYPQVGLHGFMSD
AAGATVWSYRHAHEYGGNPNRLAVMGHSAGAHMAALLGTDARWLQAQGLK
PHQLCGVVGLAGPYDFMPMTDPELVEIFGDAPAAQRQSQPVRYVGGDEPP
MLLLHGDADCVVELQNSISLQQALKREGGSAELKVYPGMGHLGILLALRK
SPERSQVLSDTLQFVRQCRAP
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MGDTASGAARAPYLHSIGVCRAGSSCTCLRRAIAANSRRLRIGCEPDSGE
RCRLATVSSALASLLRPYLIPLPAHLTILPMPSRASRWFRPAILLLGSLT
MTACSSVFFGGINAASGRSGIVEHRDQVFDPAHGLALDVYQPRGAVDAPM
VVFFYGGTWKRGSRANYRWVGRALARQGVVAMVADYRKYPQVGLHGFMSD
AAGATVWSYRHAHEYGGNPNRLAVMGHSAGAHMAALLGTDARWLQAQGLK
PHQLCGVVGLAGPYDFMPMTDPELVEIFGDAPAAQRQSQPVRYVGGDEPP
MLLLHGDADCVVELQNSISLQQALKREGGSAELKVYPGMGHLGILLALRK
SPERSQVLSDTLQFVRQCRAP


References
    Title: Genetic characterization of strains named as Xanthomonas axonopodis pv. dieffenbachiae leads to a taxonomic revision of the X. axonopodis species complex
    Constantin EC, Cleenwerck I, Maes M, Baeyen S, Van Malderghem C, De Vos P, Cottyn B
    Ref: Plant Pathol, 65:792, 2016 : PubMed

            

    Title: Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii
    Moreira LM, Almeida NF, Jr., Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE and Setubal JC <21 more author(s)>
    Ref: BMC Genomics, 11:238, 2010 : PubMed

            

    Title: Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    da Silva ACR, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida Jr NF and Kitajima JP <55 more author(s)>
    Ref: Nature, 417:459, 2002 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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