Jaillon_2004_Nature_431_946

Reference

Title : Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype - Jaillon_2004_Nature_431_946
Author(s) : Jaillon O , Aury JM , Brunet F , Petit JL , Stange-Thomann N , Mauceli E , Bouneau L , Fischer C , Ozouf-Costaz C , Bernot A , Nicaud S , Jaffe D , Fisher S , Lutfalla G , Dossat C , Segurens B , Dasilva C , Salanoubat M , Levy M , Boudet N , Castellano S , Anthouard V , Jubin C , Castelli V , Katinka M , Vacherie B , Biemont C , Skalli Z , Cattolico L , Poulain J , de Berardinis V , Cruaud C , Duprat S , Brottier P , Coutanceau JP , Gouzy J , Parra G , Lardier G , Chapple C , McKernan KJ , McEwan P , Bosak S , Kellis M , Volff JN , Guigo R , Zody MC , Mesirov J , Lindblad-Toh K , Birren B , Nusbaum C , Kahn D , Robinson-Rechavi M , Laudet V , Schachter V , Quetier F , Saurin W , Scarpelli C , Wincker P , Lander ES , Weissenbach J , Roest Crollius H
Ref : Nature , 431 :946 , 2004
Abstract :

Tetraodon nigroviridis is a freshwater puffer fish with the smallest known vertebrate genome. Here, we report a draft genome sequence with long-range linkage and substantial anchoring to the 21 Tetraodon chromosomes. Genome analysis provides a greatly improved fish gene catalogue, including identifying key genes previously thought to be absent in fish. Comparison with other vertebrates and a urochordate indicates that fish proteins have diverged markedly faster than their mammalian homologues. Comparison with the human genome suggests approximately 900 previously unannotated human genes. Analysis of the Tetraodon and human genomes shows that whole-genome duplication occurred in the teleost fish lineage, subsequent to its divergence from mammals. The analysis also makes it possible to infer the basic structure of the ancestral bony vertebrate genome, which was composed of 12 chromosomes, and to reconstruct much of the evolutionary history of ancient and recent chromosome rearrangements leading to the modern human karyotype.

PubMedSearch : Jaillon_2004_Nature_431_946
PubMedID: 15496914
Gene_locus related to this paper: tetng-3neur , tetng-4neur , tetng-ACHE , tetng-BCHE , tetng-h3cfz4 , tetng-h3ci57 , tetng-h3cl30 , tetng-h3cnh2 , tetng-nlgn2b , tetng-h3czr1 , tetng-h3dbr5 , tetng-nlgn2a , tetng-nlgn3b , tetng-q4ref8 , tetng-q4rjp3 , tetng-q4rjy3 , tetng-q4rk53 , tetng-q4rk63 , tetng-q4rk66 , tetng-q4rkk3 , tetng-q4rli3 , tetng-q4rn09 , tetng-q4rqj4 , tetng-q4rqz6 , tetng-q4rr22 , tetng-q4rru9 , tetng-q4rtq6 , tetng-q4rvf8 , tetng-q4rwa0 , tetng-q4rx90 , tetng-q4ryv8 , tetng-q4ryz3 , tetng-q4s0h8 , tetng-q4s5x0 , tetng-q4s6r1 , tetng-q4s6t6 , tetng-q4s7e3 , tetng-q4s7x6 , tetng-q4s8t5 , tetng-q4s9w9 , tetng-q4s050 , tetng-q4s091 , tetng-q4s144 , tetng-q4s309 , tetng-q4s578 , tetng-q4sal4 , tetng-q4sbm6 , tetng-q4sbp0 , tetng-q4sbu0 , tetng-q4sd49 , tetng-q4ser6 , tetng-q4sfm7 , tetng-q4sgm5 , tetng-q4sgv2 , tetng-q4sh74 , tetng-q4shl7 , tetng-q4si60 , tetng-q4sie5 , tetng-q4sku6 , tetng-q4smu0 , tetng-q4smy3 , tetng-q4snp0 , tetng-q4snq3 , tetng-q4spa7 , tetng-q4spq0 , tetng-q4sqr3 , tetng-q4sty0 , tetng-q4suu2 , tetng-q4suz1 , tetng-q4sxh3 , tetng-q4syn6 , tetng-q4szk0 , tetng-q4szy0 , tetng-q4t3m9 , tetng-q4t4a1 , tetng-q4t6m1 , tetng-q4t7r6 , tetng-q4t173 , tetng-q4t826 , tetng-q4t920 , tetng-q4ta33 , tetng-q4tab8 , tetng-q4tb62 , tetng-q4tbe2 , tetng-h3dbw2 , tetng-h3cpc8 , tetng-h3cjy0 , tetng-h3d966 , tetng-h3d3e3 , tetng-h3d961 , tetng-h3ctg6 , tetng-h3dde8 , tetng-h3dde9 , tetng-h3det9 , tetng-h3cre8 , tetng-h3dfb4 , tetng-h3clj8 , tetng-h3cab8 , tetng-h3dkg4

Related information

Gene_locus tetng-3neur    tetng-4neur    tetng-ACHE    tetng-BCHE    tetng-h3cfz4    tetng-h3ci57    tetng-h3cl30    tetng-h3cnh2    tetng-nlgn2b    tetng-h3czr1    tetng-h3dbr5    tetng-nlgn2a    tetng-nlgn3b    tetng-q4ref8    tetng-q4rjp3    tetng-q4rjy3    tetng-q4rk53    tetng-q4rk63    tetng-q4rk66    tetng-q4rkk3    tetng-q4rli3    tetng-q4rn09    tetng-q4rqj4    tetng-q4rqz6    tetng-q4rr22    tetng-q4rru9    tetng-q4rtq6    tetng-q4rvf8    tetng-q4rwa0    tetng-q4rx90    tetng-q4ryv8    tetng-q4ryz3    tetng-q4s0h8    tetng-q4s5x0    tetng-q4s6r1    tetng-q4s6t6    tetng-q4s7e3    tetng-q4s7x6    tetng-q4s8t5    tetng-q4s9w9    tetng-q4s050    tetng-q4s091    tetng-q4s144    tetng-q4s309    tetng-q4s578    tetng-q4sal4    tetng-q4sbm6    tetng-q4sbp0    tetng-q4sbu0    tetng-q4sd49    tetng-q4ser6    tetng-q4sfm7    tetng-q4sgm5    tetng-q4sgv2    tetng-q4sh74    tetng-q4shl7    tetng-q4si60    tetng-q4sie5    tetng-q4sku6    tetng-q4smu0    tetng-q4smy3    tetng-q4snp0    tetng-q4snq3    tetng-q4spa7    tetng-q4spq0    tetng-q4sqr3    tetng-q4sty0    tetng-q4suu2    tetng-q4suz1    tetng-q4sxh3    tetng-q4syn6    tetng-q4szk0    tetng-q4szy0    tetng-q4t3m9    tetng-q4t4a1    tetng-q4t6m1    tetng-q4t7r6    tetng-q4t173    tetng-q4t826    tetng-q4t920    tetng-q4ta33    tetng-q4tab8    tetng-q4tb62    tetng-q4tbe2    tetng-h3dbw2    tetng-h3cpc8    tetng-h3cjy0    tetng-h3d966    tetng-h3d3e3    tetng-h3d961    tetng-h3ctg6    tetng-h3dde8    tetng-h3dde9    tetng-h3det9    tetng-h3cre8    tetng-h3dfb4    tetng-h3clj8    tetng-h3cab8    tetng-h3dkg4
Gene_locus_frgt tetng-1neur    tetng-h3c543    tetng-h3c766    tetng-h3cac5    tetng-h3cck4    tetng-h3ce23    tetng-h3cka9    tetng-h3dah1    tetng-q4rca9    tetng-q4rdg0    tetng-q4rhx9    tetng-q4rq85    tetng-q4ruh0    tetng-q4rwg7    tetng-q4rwg8    tetng-q4rwn1    tetng-q4ry97    tetng-q4ry98    tetng-q4ryb0    tetng-q4s5e6    tetng-q4s009    tetng-q4s9a1    tetng-q4scc9    tetng-q4scd0    tetng-q4sdy3    tetng-q4se67    tetng-q4se81    tetng-q4sii3    tetng-q4sip9    tetng-q4sqk3    tetng-q4sr73    tetng-q4sr74    tetng-q4svx3    tetng-q4svx5    tetng-q4swp2    tetng-q4sx48    tetng-q4syn5    tetng-q4t1f9    tetng-q4t3g7    tetng-q4t6m0    tetng-q4t6v2    tetng-q4t8p4    tetng-q4t8q3    tetng-q4t9n1    tetng-q4t383    tetng-q4t555    tetng-q4t820    tetng-q4tbn1    tetng-q4tbp1    tetng-q4tcg8    tetng-q4tgw3    tetng-q4tid9    tetng-q4tix7    tetng-h3dr63    tetng-q4s2n4    tetng-h3d765    tetng-h3ciy7    tetng-h3cx09

Citations formats

Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biemont C, Skalli Z, Cattolico L, Poulain J, de Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigo R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quetier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H (2004)
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
Nature 431 :946

Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biemont C, Skalli Z, Cattolico L, Poulain J, de Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigo R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quetier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H (2004)
Nature 431 :946