Gene_locus Report for: agrtu-ATU2409 Agrobacterium fabrum (Agrobacterium tumefaciens, Rhizobium radiobacter, Agrobacterium radiobacter); Rhizobium sp.; Agrobacterium sp. Polyhydroxybutyrate depolymerase atu2409
Comment
Other strains: Agrobacterium fabrum (Agrobacterium tumefaciens, Rhizobium radiobacter, Agrobacterium radiobacter) (C58 / ATCC 33970; J-07); Rhizobium sp. PDC82; Agrobacterium sp. ATCC 31749 Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Alphaproteobacteria: N E > Rhizobiales: N E > Rhizobiaceae: N E > Rhizobium/Agrobacterium group: N E > Agrobacterium: N E > Agrobacterium tumefaciens complex: N E > Agrobacterium tumefaciens: N E 6_AlphaBeta_hydrolase :
agrt5-a9cfu7 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Putative uncharacterized protein ,
agrt5-a9clq8 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Putative uncharacterized protein ,
agrt5-q7d3m5 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Putative uncharacterized protein ATU5212 estC ,
agrtu-ATU1572 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hydrolase ,
agrtu-ATU2576 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu2576 ,
agrtu-PCA Agrobacterium tumefaciens, Rhizobium radiobacter (Agrobacterium radiobacter) 3-oxoadipate enol-lactone hydrolase, decarboxylase (agr_pat_317p) .
A85-EsteraseD-FGH :
agrt5-a9cj11 .
A85-Feruloyl-Esterase :
agrt5-a9cie7 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Esterase/lipase .
A85-IroE-IroD-Fes-Yiel :
agrtu-ATU0403 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu0403 (agr_c_710p) .
Abhydrolase_9 :
agrt5-a9cjp2 Agrobacterium tumefaciens; Agrobacterium sp.(Agrobacterium radiobacter) Putative uncharacterized protein ,
rhird-a0a0d0kxg0 Agrobacterium tumefaciens complex Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) Membrane protein ,
rhird-a0a0f4fv35 Agrobacterium tumefaciens complex Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) Uncharacterized protein ,
rhird-a0a176wxp3 Agrobacterium tumefaciens complex Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) Uncharacterized protein ,
rhird-a0a1b9t4b5 Agrobacterium tumefaciens complex Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) Uncharacterized protein ,
9rhiz-a0a1g5f4z3 Rhizobium sp. (Agrobacterium radiobacter); Agrobacterium tumefaciens; Agrobacterium sp. Uncharacterized membrane protein ,
rhird-f7u7q0 Agrobacterium tumefaciens Uncharacterized protein ,
rhird-h0h6e2 Agrobacterium tumefaciens (Agrobacterium radiobacter); Agrobacterium sp. (Rhizobium lupini) Uncharacterized protein .
Acetyl-esterase_deacetylase :
agrt5-q7d1j0 Agrobacterium tumefaciens Agrobacterium sp.) (Rhizobium lupini) agr_c_708p, Acetyl xylan esterase .
Acyl-CoA_Thioesterase :
agrtu-ATU3652 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu3652 .
AlphaBeta_hydrolase :
agrtu-ATU0253 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu0253 ,
agrtu-ATU2061 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hydrolase ,
agrtu-ATU4238 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hydrolase AGR_L_1247 ,
agrtu-ATU5296 Agrobacterium tumefaciens (strain C58 / ATCC 33970) arylester hydrolase (agr_pat_424p) ,
agrtu-ATU5446 Agrobacterium tumefaciens (strain C58 / ATCC 33970) cultivar specificity protein w78 (agr_pat_654p) .
Atu1826-like :
agrtu-ATU1826 .
BD-FAE :
agrtu-ATU1617 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu1617 .
Carboxymethylbutenolide_lactonase :
agrtu-PCAD Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter), Agrobacterium sp. beta-ketoadipate enol-lactone hydrolase .
Chlorophyllase :
agrtu-ATU5275 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu5275 .
Dienelactone_hydrolase :
agrtu-ATU3651 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu3651 ,
agrtu-DLHH Agrobacterium tumefaciens (strain C58 / ATCC 33970) carboxymethylenebutenolidase .
Duf_900 :
agrt5-a9ckr2 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Putative uncharacterized protein ,
agrt5-q7d1j3 Agrobacterium tumefaciens, Agrobacterium sp. (Rhizobium lupini) agr_c_699p .
Epoxide_hydrolase :
agrtu-ATU5190 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu5190 ,
agrtu-EPHA Agrobacterium tumefaciens (strain C58 / ATCC 33970) epoxide hydrolase .
Haloacetate_dehalogenase :
agrt5-a9cle4 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Hydrolase ,
agrtu-ATU5495 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hydrolase agr_pat_728 .
Haloalkane_dehalogenase-HLD2 :
agrtu-DHAA .
Haloperoxidase :
agrt5-a9cf94 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Non-heme chloroperoxidase ,
agrt5-a9cfa9 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Non-heme haloperoxidase ,
agrt5-a9clq9 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Non-heme chloroperoxidase ,
agrtu-ATU5389 Agrobacterium tumefaciens (strain C58 / ATCC 33970) non-heme haloperoxidase ,
agrtu-CPO Agrobacterium tumefaciens (strain C58 / ATCC 33970) non-heme chloroperoxidase .
Hormone-sensitive_lipase_like :
agrtu-ATU2481 Agrobacterium tumefaciens, Agrobacterium sp. (Rhizobium lupini) lipase esterase ,
agrtu-ATU5348 Agrobacterium tumefaciens (strain C58 / ATCC 33970) lipase/esterase .
Hydrolase_RBBP9_YdeN :
agrtu-ATU1842 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu1842 ,
agrtu-ATU3428 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu3428 .
LYsophospholipase_carboxylesterase :
agrtu-ATU1045 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu1045 ,
agrtu-ATU1102 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu1102 ,
agrtu-ATU2452 .
Monoglyceridelipase_lysophospholip :
agrt5-a9cfs8 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)) Lysophospholipase ,
agrtu-ATU2126 Agrobacterium tumefaciens Agrobacterium sp. (Rhizobium lupini) hypothetical protein atu2126 agr_c_3857p .
PHA_synth_I :
agrtu-PHBC Agrobacterium tumefaciens (strain C58 / ATCC 33970) poly-beta-hydroxybutyrate synthase .
PHB_depolymerase_PhaZ :
agrt5-a9ckt2 Agrobacterium tumefaciens (strain C58 / ATCC 33970) intracellular phb depolymerase (agr_c_24p) .
Proline_iminopeptidase :
agrt5-a9cji8 Agrobacterium tumefaciens (strain C58 / ATCC 33970). Proline iminopeptidase .
Prolyl_oligopeptidase_S9 :
agrt5-q7d3t6 Agrobacterium tumefaciens (strain C58 / ATCC 33970) agr_pat_205p ,
agrtu-ATTS Agrobacterium tumefaciens (strain C58 / ATCC 33970) dipeptidyl peptidase IV ,
agrtu-ATU0841 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu0841 ,
agrtu-ATU5193 Agrobacterium tumefaciens (strain C58 / ATCC 33970) peptidase .
RutD :
agrtu-ATU2497 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hydrolase .
S9N_PREPL_Peptidase_S9 :
agrtu-PTRB Agrobacterium tumefaciens (strain C58 / ATCC 33970) protease II (agr_c_1636p) .
Tannase :
agrt5-y5261 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hypothetical protein atu5261/agr_pat_374 .
Thioesterase :
agrtu-GRST Agrobacterium tumefaciens (strain C58 / ATCC 33970) gramicidin s biosynthesis thioesterase .
Tiancimycin-TnmK-Tripeptidase-HIP :
agrtu-ATU2171 Agrobacterium tumefaciens (strain C58 / ATCC 33970) hydrolase .
UCP031982 :
agrt5-a9cki2 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Putative uncharacterized protein ,
agrt5-q7cx24 Agrobacterium tumefaciens (strain C58 / ATCC 33970) Putative uncharacterized protein .
VirJ :
agrtu-ACVB Agrobacterium tumefaciens; Agrobacterium radiobacter; Agrobacterium fabrum, virulence protein b Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can
retrieve all strain data
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Agrobacterium tumefaciens str. C58:
N ,
E .
Agrobacterium fabrum str. C58:
N ,
E .
Agrobacterium radiobacter:
N ,
E .
Agrobacterium tumefaciens F2:
N ,
E .
Agrobacterium tumefaciens str. Cherry 2E-2-2:
N ,
E .
Agrobacterium radiobacter DSM 30147:
N ,
E .
Agrobacterium tumefaciens 5A:
N ,
E .
Agrobacterium tumefaciens GW4:
N ,
E .
Rhizobium radiobacter:
N ,
E .
Agrobacterium tumefaciens (strain apple 185):
N ,
E .
Agrobacterium radiobacter K84:
N ,
E .
Agrobacterium tumefaciens LBA4213 (Ach5):
N ,
E .
Agrobacterium tumefaciens str. Kerr 14:
N ,
E .
Agrobacterium tumefaciens str. CFBP 5621:
N ,
E .
Agrobacterium tumefaciens str. CFBP 5771:
N ,
E .
Agrobacterium tumefaciens CCNWGS0286:
N ,
E .
Agrobacterium fabrum str. J-07:
N ,
E .
Rhizobium sp. PDC82:
N ,
E .
Agrobacterium fabrum:
N ,
E .
Agrobacterium sp. ATCC 31749:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: agrtu-ATU2409 Colored MSA for Esterase_phb (raw)
MSMHQDFATGRAARLFRSARTLVLGLAMCASAGVAASASTCGQLPGPGME
PGRHDFSILSNGEKRDGVYFVPSAYDGKKPLPVVFDFHGSNSNPHGQLNR
SGWDKLAERDGLMVVALAGSLNGELPGTHAWNVPGVTKRPGGLDEVGFIR
DAITMVKGKFCVDEERFYGSGYSGGGRMLSQFICSGNADFNAAGFVASLR
AGYPLETEGRWGPDAASCKPARPMSIIAFAGLKDPANPYQGGGKSYWQYS
GETALKRWAEMDGCKGGAKTKPGESFTVNSYDVCKAGARIQSYVIENWDH
AWPRATMKAEVLAASAVVTRKPGGEQTPKAEPAVERKMPTGEVTRTVDAA
ERMWDFFRNTEGQMVVDAVVKKDCGTKANSASASASETACSQNSKPSALP
VVKTLNNLSGSSAPVAEDAL
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M S M H Q D F A T G R A A R L F R S A R T L V L G L A M C A S A G V A A S A S T C G Q L P G P G M E P G R H D F S I L S N G E K R D G V Y F V P S A Y D G K K P L P V V F D F H G S N S N P H G Q L N R S G W D K L A E R D G L M V V A L A G S L N G E L P G T H A W N V P G V T K R P G G L D E V G F I R D A I T M V K G K F C V D E E R F Y G S G Y S G G G R M L S Q F I C S G N A D F N A A G F V A S L R A G Y P L E T E G R W G P D A A S C K P A R P M S I I A F A G L K D P A N P Y Q G G G K S Y W Q Y S G E T A L K R W A E M D G C K G G A K T K P G E S F T V N S Y D V C K A G A R I Q S Y V I E N W D H A W P R A T M K A E V L A A S A V V T R K P G G E Q T P K A E P A V E R K M P T G E V T R T V D A A E R M W D F F R N T E G Q M V V D A V V K K D C G T K A N S A S A S A S E T A C S Q N S K P S A L P V V K T L N N L S G S S A P V A E D A L
References
Title: Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58Goodner B , Hinkle G , Gattung S , Miller N , Blanchard M , Qurollo B , Goldman BS , Cao Y , Askenazi M and Slater S <21 more author(s)> Goodner B , Hinkle G , Gattung S , Miller N , Blanchard M , Qurollo B , Goldman BS , Cao Y , Askenazi M , Halling C , Mullin L , Houmiel K , Gordon J , Vaudin M , Iartchouk O , Epp A , Liu F , Wollam C , Allinger M , Doughty D , Scott C , Lappas C , Markelz B , Flanagan C , Crowell C , Gurson J , Lomo C , Sear C , Strub G , Cielo C , Slater S (- 21) Ref: Science, 294 :2323, 2001 : PubMed Abstract ESTHER: Goodner_2001_Science_294_2323 PubMedSearch: Goodner 2001 Science 294 2323 PubMedID: 11743194 Gene_locus related to this paper: agrt5-a9cf94 ,
agrt5-a9cfa9 ,
agrt5-a9cfs8 ,
agrt5-a9cfu7 ,
agrt5-a9cie7 ,
agrt5-a9cj11 ,
agrt5-a9cjp2 ,
agrt5-a9cki2 ,
agrt5-a9ckr2 ,
agrt5-a9ckt2 ,
agrt5-a9cle4 ,
agrt5-a9clq8 ,
agrt5-a9clq9 ,
agrt5-q7cx24 ,
agrt5-q7d1j0 ,
agrt5-q7d1j3 ,
agrt5-q7d3m5 ,
agrt5-q7d3t6 ,
agrt5-y5261 ,
agrtu-ACVB ,
agrtu-ATTS ,
agrtu-ATU0253 ,
agrtu-ATU0403 ,
agrtu-ATU0841 ,
agrtu-ATU1045 ,
agrtu-ATU1102 ,
agrtu-ATU1572 ,
agrtu-ATU1617 ,
agrtu-ATU1826 ,
agrtu-ATU1842 ,
agrtu-ATU2061 ,
agrtu-ATU2126 ,
agrtu-ATU2171 ,
agrtu-ATU2409 ,
agrtu-ATU2452 ,
agrtu-ATU2481 ,
agrtu-ATU2497 ,
agrtu-ATU2576 ,
agrtu-ATU3428 ,
agrtu-ATU3651 ,
agrtu-ATU3652 ,
agrtu-ATU4238 ,
agrtu-ATU5190 ,
agrtu-ATU5193 ,
agrtu-ATU5275 ,
agrtu-ATU5296 ,
agrtu-ATU5348 ,
agrtu-ATU5389 ,
agrtu-ATU5446 ,
agrtu-ATU5495 ,
agrtu-CPO ,
agrtu-DHAA ,
agrtu-DLHH ,
agrtu-EPHA ,
agrtu-GRST ,
agrtu-PCA ,
agrtu-PCAD ,
agrtu-PHBC ,
agrtu-PTRB ,
agrt5-a9cji8 Abstract
Agrobacterium tumefaciens is a plant pathogen capable of transferring a defined segment of DNA to a host plant, generating a gall tumor. Replacing the transferred tumor-inducing genes with exogenous DNA allows the introduction of any desired gene into the plant. Thus, A. tumefaciens has been critical for the development of modern plant genetics and agricultural biotechnology. Here we describe the genome of A. tumefaciens strain C58, which has an unusual structure consisting of one circular and one linear chromosome. We discuss genome architecture and evolution and additional genes potentially involved in virulence and metabolic parasitism of host plants.
Title: The genome of the natural genetic engineer Agrobacterium tumefaciens C58Wood DW , Setubal JC , Kaul R , Monks DE , Kitajima JP , Okura VK , Zhou Y , Chen L , Wood GE and Nester EW <41 more author(s)> Wood DW , Setubal JC , Kaul R , Monks DE , Kitajima JP , Okura VK , Zhou Y , Chen L , Wood GE , Almeida NF, Jr. , Woo L , Chen Y , Paulsen IT , Eisen JA , Karp PD , Bovee D, Sr. , Chapman P , Clendenning J , Deatherage G , Gillet W , Grant C , Kutyavin T , Levy R , Li MJ , McClelland E , Palmieri A , Raymond C , Rouse G , Saenphimmachak C , Wu Z , Romero P , Gordon D , Zhang S , Yoo H , Tao Y , Biddle P , Jung M , Krespan W , Perry M , Gordon-Kamm B , Liao L , Kim S , Hendrick C , Zhao ZY , Dolan M , Chumley F , Tingey SV , Tomb JF , Gordon MP , Olson MV , Nester EW (- 41) Ref: Science, 294 :2317, 2001 : PubMed Abstract ESTHER: Wood_2001_Science_294_2317 PubMedSearch: Wood 2001 Science 294 2317 PubMedID: 11743193 Gene_locus related to this paper: agrt5-a9cf94 ,
agrt5-a9cfa9 ,
agrt5-a9cfs8 ,
agrt5-a9cfu7 ,
agrt5-a9cie7 ,
agrt5-a9cj11 ,
agrt5-a9cjp2 ,
agrt5-a9cki2 ,
agrt5-a9ckr2 ,
agrt5-a9ckt2 ,
agrt5-a9cle4 ,
agrt5-a9clq8 ,
agrt5-a9clq9 ,
agrt5-q7cx24 ,
agrt5-q7d1j0 ,
agrt5-q7d1j3 ,
agrt5-q7d3m5 ,
agrt5-y5261 ,
agrtu-ACVB ,
agrtu-ATTS ,
agrtu-ATU0253 ,
agrtu-ATU0403 ,
agrtu-ATU0841 ,
agrtu-ATU1045 ,
agrtu-ATU1102 ,
agrtu-ATU1572 ,
agrtu-ATU1617 ,
agrtu-ATU1826 ,
agrtu-ATU1842 ,
agrtu-ATU2061 ,
agrtu-ATU2126 ,
agrtu-ATU2171 ,
agrtu-ATU2409 ,
agrtu-ATU2452 ,
agrtu-ATU2481 ,
agrtu-ATU2497 ,
agrtu-ATU2576 ,
agrtu-ATU3428 ,
agrtu-ATU3651 ,
agrtu-ATU3652 ,
agrtu-ATU4238 ,
agrtu-ATU5190 ,
agrtu-ATU5193 ,
agrtu-ATU5275 ,
agrtu-ATU5296 ,
agrtu-ATU5348 ,
agrtu-ATU5389 ,
agrtu-ATU5446 ,
agrtu-ATU5495 ,
agrtu-CPO ,
agrtu-DHAA ,
agrtu-DLHH ,
agrtu-EPHA ,
agrtu-GRST ,
agrtu-PCA ,
agrtu-PCAD ,
agrtu-PHBC ,
agrtu-PTRB ,
agrt5-a9cji8 Abstract
The 5.67-megabase genome of the plant pathogen Agrobacterium tumefaciens C58 consists of a circular chromosome, a linear chromosome, and two plasmids. Extensive orthology and nucleotide colinearity between the genomes of A. tumefaciens and the plant symbiont Sinorhizobium meliloti suggest a recent evolutionary divergence. Their similarities include metabolic, transport, and regulatory systems that promote survival in the highly competitive rhizosphere; differences are apparent in their genome structure and virulence gene complement. Availability of the A. tumefaciens sequence will facilitate investigations into the molecular basis of pathogenesis and the evolutionary divergence of pathogenic and symbiotic lifestyles.
Other Papers
Agrobacterium tumefaciens (strain C58 / ATCC 33970) Esterase D