Gene_Locus Report

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Gene_locus Report for: xanc5-q3bqi2

Xanthomonas campestris pv. vesicatoria, Xanthomonas fuscans subsp. aurantifolii, Xanthomonas perforans, Putative secreted protein

Comment
Other strains: Xanthomonas campestris pv. vesicatoria (strain 85-10), Xanthomonas fuscans subsp. aurantifolii (strains: ICPB 11122; ICPB 10535), Xanthomonas perforans 91-118


Relationship
Family|PhoPQ_related
Block| X
Position in NCBI Life Tree|Xanthomonas campestris pv. vesicatoria
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Xanthomonadales: N E > Xanthomonadaceae: N E > Xanthomonas: N E > Xanthomonas euvesicatoria: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AM039952
2 UniProt : Q3BQI2, D4T9L1
2 UniProt : Q3BQI2, D4T9L1
2 Interpro : Q3BQI2, D4T9L1
2 Pfam : Q3BQI2, D4T9L1
2 PIRSF : Q3BQI2, D4T9L1
2 SUPERFAM : Q3BQI2, D4T9L1
Sequence
Graphical view for this peptide sequence: xanc5-q3bqi2
Colored MSA for PhoPQ_related (raw)
MRSKTYCSLALLTSLTLFAGVAPADPIASAASPAERCANAPDVGFGQALV
CYHDAIEQQPLTYTRVGTSSVAGVERRDYLLTSQDWSPEGLVTPARWQHD
VAIYVPTEALPTRAVLISTNGTRHPADGSAAQPASELAPEALAALAQRTR
TVVIALSDIPNQALIYQGDATPRREDDSVAYSWSLFLKAPQQRKTLPLHV
PMAAAIGRTMSLAERELAPLRIHRFVLAGASKRGWASWHATIADRRVEAV
APLVIDILNMPAVLEHMSRTYGGNWPIAFNAYAKQGITSQLQTPAFAQLV
QLQDPLSYLHTPYRTRLAVPKYIVNASGDDFFLPDNTQFFYHALPGSKAL
RVLPNSAHNIRASVVDTLAPFITRLQQQRPLPQVSDVLRTGQAPQIRFRS
SERPTQVQLWSAHNPHARDFRYACGIRYSATPIALAGGGPVPVPVQIPEN
GWSAYFVEATYADGFVATSQTYVLGKQRYPTQAPPTDNAACSTLPGVTTA
AAVR
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MRSKTYCSLALLTSLTLFAGVAPADPIASAASPAERCANAPDVGFGQALV
CYHDAIEQQPLTYTRVGTSSVAGVERRDYLLTSQDWSPEGLVTPARWQHD
VAIYVPTEALPTRAVLISTNGTRHPADGSAAQPASELAPEALAALAQRTR
TVVIALSDIPNQALIYQGDATPRREDDSVAYSWSLFLKAPQQRKTLPLHV
PMAAAIGRTMSLAERELAPLRIHRFVLAGASKRGWASWHATIADRRVEAV
APLVIDILNMPAVLEHMSRTYGGNWPIAFNAYAKQGITSQLQTPAFAQLV
QLQDPLSYLHTPYRTRLAVPKYIVNASGDDFFLPDNTQFFYHALPGSKAL
RVLPNSAHNIRASVVDTLAPFITRLQQQRPLPQVSDVLRTGQAPQIRFRS
SERPTQVQLWSAHNPHARDFRYACGIRYSATPIALAGGGPVPVPVQIPEN
GWSAYFVEATYADGFVATSQTYVLGKQRYPTQAPPTDNAACSTLPGVTTA
AAVR


References
    Title: Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper
    Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM and Jones JB <8 more author(s)>
    Ref: BMC Genomics, 12:146, 2011 : PubMed

            

    Title: Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii
    Moreira LM, Almeida NF, Jr., Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE and Setubal JC <21 more author(s)>
    Ref: BMC Genomics, 11:238, 2010 : PubMed

            

    Title: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence
    Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Buttner D, Caldana C, Gaigalat L, Goesmann A and Kaiser O <19 more author(s)>
    Ref: Journal of Bacteriology, 187:7254, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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