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References (19)

Title : An intensified trans-sectoral nutritional intervention in malnourished patients with chronic pancreatitis improves diseases prognosis and identifies potential biomarkers of nutritional status - Wiese_2024_Front.Med.(Lausanne)_11_1446699
Author(s) : Wiese ML , Frost F , Meyer F , Muller J , Valentini L , Rischmuller K , Lamprecht G , Steveling A , Lerch MM , Aghdassi AA
Ref : Front Med (Lausanne) , 11 :1446699 , 2024
Abstract :
PubMedSearch : Wiese_2024_Front.Med.(Lausanne)_11_1446699
PubMedID: 39440042

Title : Phytotoxin production in Aspergillus terreus is regulated by independent environmental signals - Gressler_2015_Elife_4_e07861
Author(s) : Gressler M , Meyer F , Heine D , Hortschansky P , Hertweck C , Brock M
Ref : Elife , 4 : , 2015
Abstract :
PubMedSearch : Gressler_2015_Elife_4_e07861
PubMedID: 26173180
Gene_locus related to this paper: aspte-AT1

Title : Draft genome sequence of Agrobacterium albertimagni strain AOL15 - Trimble_2012_J.Bacteriol_194_6986
Author(s) : Trimble WL , Phung le T , Meyer F , Gilbert JA , Silver S
Ref : Journal of Bacteriology , 194 :6986 , 2012
Abstract :
PubMedSearch : Trimble_2012_J.Bacteriol_194_6986
PubMedID: 23209236
Gene_locus related to this paper: 9rhiz-k2qid5 , 9rhiz-k2pia2 , 9rhiz-k2pj64 , 9rhiz-k2q2w5 , 9rhiz-k2qps1 , 9rhiz-k2qcm2

Title : Draft genome sequence of Alcaligenes faecalis subsp. faecalis NCIB 8687 (CCUG 2071) - Phung_2012_J.Bacteriol_194_5153
Author(s) : Phung le T , Trimble WL , Meyer F , Gilbert JA , Silver S
Ref : Journal of Bacteriology , 194 :5153 , 2012
Abstract :
PubMedSearch : Phung_2012_J.Bacteriol_194_5153
PubMedID: 22933773
Gene_locus related to this paper: alcfa-j0b6t7 , 9burk-m5j0m0 , alcfa-j0b1x8

Title : Intestinal tissues induce an SNP mutation in Pseudomonas aeruginosa that enhances its virulence: possible role in anastomotic leak - Olivas_2012_PLoS.One_7_e44326
Author(s) : Olivas AD , Shogan BD , Valuckaite V , Zaborin A , Belogortseva N , Musch M , Meyer F , Trimble WL , An G , Gilbert J , Zaborina O , Alverdy JC
Ref : PLoS ONE , 7 :e44326 , 2012
Abstract :
PubMedSearch : Olivas_2012_PLoS.One_7_e44326
PubMedID: 22952955
Gene_locus related to this paper: pseae-PA1558 , pseae-PA2927 , pseae-PA2949 , pseae-PA3695 , pseae-PA5080 , pseae-q9i252

Title : Draft genome sequence of Achromobacter piechaudii strain HLE - Trimble_2012_J.Bacteriol_194_6355
Author(s) : Trimble WL , Phung le T , Meyer F , Silver S , Gilbert JA
Ref : Journal of Bacteriology , 194 :6355 , 2012
Abstract :
PubMedSearch : Trimble_2012_J.Bacteriol_194_6355
PubMedID: 23105084
Gene_locus related to this paper: 9burk-j4ydj5 , 9burk-j4qky8 , 9burk-j4ybp2 , 9burk-j4j905 , 9burk-j4yk41

Title : The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity - Gartemann_2008_J.Bacteriol_190_2138
Author(s) : Gartemann KH , Abt B , Bekel T , Burger A , Engemann J , Flugel M , Gaigalat L , Goesmann A , Grafen I , Kalinowski J , Kaup O , Kirchner O , Krause L , Linke B , McHardy A , Meyer F , Pohle S , Ruckert C , Schneiker S , Zellermann EM , Puhler A , Eichenlaub R , Kaiser O , Bartels D
Ref : Journal of Bacteriology , 190 :2138 , 2008
Abstract :
PubMedSearch : Gartemann_2008_J.Bacteriol_190_2138
PubMedID: 18192381
Gene_locus related to this paper: clam3-a5cln9 , clam3-a5clw2 , clam3-a5cm48 , clam3-a5cmg3 , clam3-a5cmk0 , clam3-a5cn86 , clam3-a5cr52 , clam3-a5cr57 , clam3-a5crq6 , clam3-a5csc5 , clam3-metx , clams-b0rcr0 , clams-b0rdd6 , clams-b0rde2 , clams-b0rga8 , clams-b0riv5 , clam3-a5cui5 , clam3-a5cp43 , clam3-a5cp56

Title : Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans - Sievert_2008_Appl.Environ.Microbiol_74_1145
Author(s) : Sievert SM , Scott KM , Klotz MG , Chain PS , Hauser LJ , Hemp J , Hugler M , Land M , Lapidus A , Larimer FW , Lucas S , Malfatti SA , Meyer F , Paulsen IT , Ren Q , Simon J
Ref : Applied Environmental Microbiology , 74 :1145 , 2008
Abstract :
PubMedSearch : Sievert_2008_Appl.Environ.Microbiol_74_1145
PubMedID: 18065616
Gene_locus related to this paper: suldn-q30ua6 , suldn-q30rs9

Title : The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae - Gross_2008_BMC.Genomics_9_449
Author(s) : Gross R , Guzman CA , Sebaihia M , dos Santos VA , Pieper DH , Koebnik R , Lechner M , Bartels D , Buhrmester J , Choudhuri JV , Ebensen T , Gaigalat L , Herrmann S , Khachane AN , Larisch C , Link S , Linke B , Meyer F , Mormann S , Nakunst D , Ruckert C , Schneiker-Bekel S , Schulze K , Vorholter FJ , Yevsa T , Engle JT , Goldman WE , Puhler A , Gobel UB , Goesmann A , Blocker H , Kaiser O , Martinez-Arias R
Ref : BMC Genomics , 9 :449 , 2008
Abstract :
PubMedSearch : Gross_2008_BMC.Genomics_9_449
PubMedID: 18826580
Gene_locus related to this paper: alceu-CBNC , borpd-a9hwh7 , borpd-a9hxw5 , borpd-a9hyr5 , borpd-a9hzm8 , borpd-a9i1l8 , borpd-a9i4f4 , borpd-a9i8i7 , borpd-a9icj9 , borpd-a9iec4 , borpd-a9iep7 , borpd-a9ih03 , borpd-a9iu09 , borpd-metx , bursp-tecF , borpd-a9i1v7

Title : Complete genome sequence of the myxobacterium Sorangium cellulosum - Schneiker_2007_Nat.Biotechnol_25_1281
Author(s) : Schneiker S , Perlova O , Kaiser O , Gerth K , Alici A , Altmeyer MO , Bartels D , Bekel T , Beyer S , Bode E , Bode HB , Bolten CJ , Choudhuri JV , Doss S , Elnakady YA , Frank B , Gaigalat L , Goesmann A , Groeger C , Gross F , Jelsbak L , Kalinowski J , Kegler C , Knauber T , Konietzny S , Kopp M , Krause L , Krug D , Linke B , Mahmud T , Martinez-Arias R , McHardy AC , Merai M , Meyer F , Mormann S , Munoz-Dorado J , Perez J , Pradella S , Rachid S , Raddatz G , Rosenau F , Ruckert C , Sasse F , Scharfe M , Schuster SC , Suen G , Treuner-Lange A , Velicer GJ , Vorholter FJ , Weissman KJ , Welch RD , Wenzel SC , Whitworth DE , Wilhelm S , Wittmann C , Blocker H , Puhler A , Muller R
Ref : Nat Biotechnol , 25 :1281 , 2007
Abstract :
PubMedSearch : Schneiker_2007_Nat.Biotechnol_25_1281
PubMedID: 17965706
Gene_locus related to this paper: sorc5-a9en84 , sorc5-a9enf0 , sorc5-a9eu04 , sorc5-a9eur8 , sorc5-a9ev31 , sorc5-a9ewe7 , sorc5-a9f2w6 , sorc5-a9fd82 , sorc5-a9fec8 , sorc5-a9fg26 , sorc5-a9fjh7 , sorc5-a9fpe7 , sorc5-a9fvz2 , sorc5-a9fw17 , sorc5-a9fw70 , sorc5-a9fwe6 , sorc5-a9fya1 , sorc5-a9g9n9 , sorc5-a9g651 , sorc5-a9gj93 , sorc5-a9glc5 , sorc5-a9glv5 , sorc5-a9gqy4 , sorc5-a9grj0 , sorc5-a9grk3 , sorc5-a9grp4 , sorc5-a9grt6 , sorc5-a9guw3 , sorc5-a9gy73 , sorce-q2n3s7 , sorc5-a9fsu5 , sorc5-a9gq11 , sorc5-a9ev65 , sorc5-a9fcj4 , sorc5-a9gut3 , sorc5-a9env4 , sorc5-a9fai0 , sorc5-a9g908 , sorc5-a9gmg6 , sorc5-ce1

Title : The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2 - Scott_2006_PLoS.Biol_4_e383
Author(s) : Scott KM , Sievert SM , Abril FN , Ball LA , Barrett CJ , Blake RA , Boller AJ , Chain PS , Clark JA , Davis CR , Detter C , Do KF , Dobrinski KP , Faza BI , Fitzpatrick KA , Freyermuth SK , Harmer TL , Hauser LJ , Hugler M , Kerfeld CA , Klotz MG , Kong WW , Land M , Lapidus A , Larimer FW , Longo DL , Lucas S , Malfatti SA , Massey SE , Martin DD , McCuddin Z , Meyer F , Moore JL , Ocampo LH, Jr. , Paul JH , Paulsen IT , Reep DK , Ren Q , Ross RL , Sato PY , Thomas P , Tinkham LE , Zeruth GT
Ref : PLoS Biol , 4 :e383 , 2006
Abstract :
PubMedSearch : Scott_2006_PLoS.Biol_4_e383
PubMedID: 17105352
Gene_locus related to this paper: thicr-q31fm2 , thicr-q31ih5

Title : Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes - Hain_2006_J.Bacteriol_188_7405
Author(s) : Hain T , Steinweg C , Kuenne CT , Billion A , Ghai R , Chatterjee SS , Domann E , Karst U , Goesmann A , Bekel T , Bartels D , Kaiser O , Meyer F , Puhler A , Weisshaar B , Wehland J , Liang C , Dandekar T , Lampidis R , Kreft J , Goebel W , Chakraborty T
Ref : Journal of Bacteriology , 188 :7405 , 2006
Abstract :
PubMedSearch : Hain_2006_J.Bacteriol_188_7405
PubMedID: 16936040
Gene_locus related to this paper: lisin-LIN0976 , lisin-LIN2544 , lismo-LMO2089 , lismo-LMO2452 , lismo-LMO2453 , lismo-metx , lisss-d3urb3 , lisw6-a0agy6 , lisw6-a0ajc8 , lisw6-a0am12

Title : Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter - Bauer_2006_Environ.Microbiol_8_2201
Author(s) : Bauer M , Kube M , Teeling H , Richter M , Lombardot T , Allers E , Wurdemann CA , Quast C , Kuhl H , Knaust F , Woebken D , Bischof K , Mussmann M , Choudhuri JV , Meyer F , Reinhardt R , Amann RI , Glockner FO
Ref : Environ Microbiol , 8 :2201 , 2006
Abstract :
PubMedSearch : Bauer_2006_Environ.Microbiol_8_2201
PubMedID: 17107561
Gene_locus related to this paper: grafk-a0ly58 , grafk-a0lyb1 , grafk-a0lzl9 , grafk-a0lzn2 , grafk-a0m3f2 , grafk-a0m3h3 , grafk-a0m3u0 , grafk-a0m4n9 , grafk-a0m5m4 , grafk-a0m6x9 , grafk-a0m6z1 , grafk-a0m243 , grafk-a0m536 , grafk-a0m641 , grafk-a0m784 , grafk-a0m4i1

Title : Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis - Schneiker_2006_Nat.Biotechnol_24_997
Author(s) : Schneiker S , Martins dos Santos VA , Bartels D , Bekel T , Brecht M , Buhrmester J , Chernikova TN , Denaro R , Ferrer M , Gertler C , Goesmann A , Golyshina OV , Kaminski F , Khachane AN , Lang S , Linke B , McHardy AC , Meyer F , Nechitaylo T , Puhler A , Regenhardt D , Rupp O , Sabirova JS , Selbitschka W , Yakimov MM , Timmis KN , Vorholter FJ , Weidner S , Kaiser O , Golyshin PN
Ref : Nat Biotechnol , 24 :997 , 2006
Abstract :
PubMedSearch : Schneiker_2006_Nat.Biotechnol_24_997
PubMedID: 16878126
Gene_locus related to this paper: alcbo-Q9F9H0 , alcbs-q0vl04 , alcbs-q0vl36 , alcbs-q0vl92 , alcbs-q0vlp5 , alcbs-q0vlq1 , alcbs-q0vlt9 , alcbs-q0vm92 , alcbs-q0vmd2 , alcbs-q0vmd6 , alcbs-q0vmn9 , alcbs-q0vnu3 , alcbs-q0vp43 , alcbs-q0vpa9 , alcbs-q0vpc7 , alcbs-q0vpg7 , alcbs-q0vpn2 , alcbs-q0vps0 , alcbs-q0vq49 , alcbs-q0vsg4 , alcbs-q0vth9 , marav-a1u5n0 , alcbs-q0vp59 , alcbs-q0vlk5

Title : Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora - Tauch_2005_J.Bacteriol_187_4671
Author(s) : Tauch A , Kaiser O , Hain T , Goesmann A , Weisshaar B , Albersmeier A , Bekel T , Bischoff N , Brune I , Chakraborty T , Kalinowski J , Meyer F , Rupp O , Schneiker S , Viehoever P , Puhler A
Ref : Journal of Bacteriology , 187 :4671 , 2005
Abstract :
PubMedSearch : Tauch_2005_J.Bacteriol_187_4671
PubMedID: 15968079
Gene_locus related to this paper: corjk-q4jsq8 , corjk-q4jst9 , corjk-q4jt28 , corjk-q4jt69 , corjk-q4jta2 , corjk-q4jth4 , corjk-q4jti5 , corjk-q4ju26 , corjk-q4jug4 , corjk-q4juz4 , corjk-q4jv41 , corjk-q4jvr2 , corjk-q4jwi5 , corjk-q4jwq5 , corjk-q4jwu9 , corjk-q4jx57 , corjk-q4jx58 , corjk-q4jxf4 , corjk-q4jxg1 , corjk-q4jxi0 , corjk-q4jxk5 , corjk-q4jxw6 , corjk-q4jxx7 , corjk-q4jy17 , corjk-q4jy19 , corjk-q4jy21 , corjk-q4jy22 , corjk-q4jyd0 , corjk-q4jyf2

Title : Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence - Thieme_2005_J.Bacteriol_187_7254
Author(s) : Thieme F , Koebnik R , Bekel T , Berger C , Boch J , Buttner D , Caldana C , Gaigalat L , Goesmann A , Kay S , Kirchner O , Lanz C , Linke B , McHardy AC , Meyer F , Mittenhuber G , Nies DH , Niesbach-Klosgen U , Patschkowski T , Ruckert C , Rupp O , Schneiker S , Schuster SC , Vorholter FJ , Weber E , Puhler A , Bonas U , Bartels D , Kaiser O
Ref : Journal of Bacteriology , 187 :7254 , 2005
Abstract :
PubMedSearch : Thieme_2005_J.Bacteriol_187_7254
PubMedID: 16237009
Gene_locus related to this paper: xanac-q8pmm6 , xanax-ACVB , xanax-BIOH , xanax-CATD , xanax-CPO , xanax-DHAA , xanax-ENTF2 , xanax-GAA , xanax-META , xanax-METX , xanax-PCAD , xanax-PHBC , xanax-PTRB , xanax-Q8PMQ8 , xanax-XAC0198 , xanax-XAC0262 , xanax-XAC0319 , xanax-XAC0372 , xanax-XAC0375 , xanax-XAC0515 , xanax-XAC0574 , xanax-XAC0591 , xanax-XAC0619 , xanax-XAC0628 , xanax-XAC0736 , xanax-XAC0753 , xanax-XAC0805 , xanax-XAC0874 , xanax-XAC1200 , xanax-XAC1213 , xanax-XAC1713 , xanax-XAC2532 , xanax-XAC2541 , xanax-XAC2907 , xanax-XAC2981 , xanax-XAC2990 , xanax-XAC3037 , xanax-XAC3053 , xanax-XAC3152 , xanax-XAC3770 , xanax-XAC3999 , xanax-XAC4046 , xanax-XAC4055 , xanax-XAC4106 , xanax-XAC4221 , xanax-XAC4316 , xanax-XYNB , xanc5-q3bqi2 , xanc5-q3bst4 , xanc5-q3btn4 , xanc5-q3bup9 , xanc5-q3byx0 , xanca-estA1 , xanca-impep , xanca-XCC1105 , xanca-XCC2285 , xanca-XCC2566 , xanca-XCC2722 , xanca-XCC3164 , xanca-XCC3555 , xanor-q5h3e8

Title : A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective - Rendulic_2004_Science_303_689
Author(s) : Rendulic S , Jagtap P , Rosinus A , Eppinger M , Baar C , Lanz C , Keller H , Lambert C , Evans KJ , Goesmann A , Meyer F , Sockett RE , Schuster SC
Ref : Science , 303 :689 , 2004
Abstract :
PubMedSearch : Rendulic_2004_Science_303_689
PubMedID: 14752164
Gene_locus related to this paper: bdeba-Bd2632 , bdeba-q6mgv6 , bdeba-q6mhk8 , bdeba-q6mhq7 , bdeba-q6mhr0 , bdeba-q6mhs4 , bdeba-q6mhs7 , bdeba-q6mi80 , bdeba-q6mif3 , bdeba-q6mii2 , bdeba-q6mik4 , bdeba-q6mim6 , bdeba-q6miz5 , bdeba-q6mk90 , bdeba-q6mlg1 , bdeba-q6mlj2 , bdeba-q6mmk6 , bdeba-q6mnq0 , bdeba-q6mnv9 , bdeba-q6mp35 , bdeba-q6mp81 , bdeba-q6mpe5 , bdeba-q6mpf6 , bdeba-q6mpi1 , bdeba-q6mpv3 , bdeba-q6mq23 , bdeba-q6mq81 , bdeba-q6mr18 , bdeba-q6mr19 , bdeba-q6mrp5 , bdeba-q6mh49

Title : The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins - Kalinowski_2003_J.Biotechnol_104_5
Author(s) : Kalinowski J , Bathe B , Bartels D , Bischoff N , Bott M , Burkovski A , Dusch N , Eggeling L , Eikmanns BJ , Gaigalat L , Goesmann A , Hartmann M , Huthmacher K , Kramer R , Linke B , McHardy AC , Meyer F , Mockel B , Pfefferle W , Puhler A , Rey DA , Ruckert C , Rupp O , Sahm H , Wendisch VF , Wiegrabe I , Tauch A
Ref : J Biotechnol , 104 :5 , 2003
Abstract :
PubMedSearch : Kalinowski_2003_J.Biotechnol_104_5
PubMedID: 12948626
Gene_locus related to this paper: corgl-CGL0007 , corgl-CGL0081 , corgl-CGL0091 , corgl-CGL0118 , corgl-CGL0151 , corgl-CGL0340 , corgl-CGL0343 , corgl-CGL0587 , corgl-CGL0591 , corgl-CGL0839 , corgl-CGL0922 , corgl-CGL1031 , corgl-Cgl1133 , corgl-CGL1144 , corgl-CGL1178 , corgl-CGL1439 , corgl-CGL1481 , corgl-CGL2002 , corgl-CGL2067 , corgl-CGL2181 , corgl-Cgl2249 , corgl-CGL2254 , corgl-CGL2393 , corgl-CGL2474 , corgl-CGL2568 , corgl-CGL2596 , corgl-CGL2618 , corgl-CGL2871 , corgl-CGL2878 , corgl-CMT3 , corgl-csp1 , corgl-q8nlm9 , corgl-q8nlr5 , corgl-q8nlz1 , corgl-y967 , corgt-g6wsn6

Title : Complete genome sequence and analysis of Wolinella succinogenes - Baar_2003_Proc.Natl.Acad.Sci.U.S.A_100_11690
Author(s) : Baar C , Eppinger M , Raddatz G , Simon J , Lanz C , Klimmek O , Nandakumar R , Gross R , Rosinus A , Keller H , Jagtap P , Linke B , Meyer F , Lederer H , Schuster SC
Ref : Proc Natl Acad Sci U S A , 100 :11690 , 2003
Abstract :
PubMedSearch : Baar_2003_Proc.Natl.Acad.Sci.U.S.A_100_11690
PubMedID: 14500908
Gene_locus related to this paper: wolsu-PYRB , wolsu-q7ma72 , wolsu-q7mrc4 , wolsu-q7mrb3