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References (23)

Title : Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation - Willing_2015_Nat.Plants_1_14023
Author(s) : Willing EM , Rawat V , Mandakova T , Maumus F , James GV , Nordstrom KJ , Becker C , Warthmann N , Chica C , Szarzynska B , Zytnicki M , Albani MC , Kiefer C , Bergonzi S , Castaings L , Mateos JL , Berns MC , Bujdoso N , Piofczyk T , de Lorenzo L , Barrero-Sicilia C , Mateos I , Piednol M , Hagmann J , Chen-Min-Tao R , Iglesias-Fernandez R , Schuster SC , Alonso-Blanco C , Roudier F , Carbonero P , Paz-Ares J , Davis SJ , Pecinka A , Quesneville H , Colot V , Lysak MA , Weigel D , Coupland G , Schneeberger K
Ref : Nat Plants , 1 :14023 , 2015
Abstract :
PubMedSearch : Willing_2015_Nat.Plants_1_14023
PubMedID: 27246759
Gene_locus related to this paper: araal-a0a087gz21 , araal-a0a087h4k1

Title : A mutation burst during the acute phase of Helicobacter pylori infection in humans and rhesus macaques - Linz_2014_Nat.Commun_5_4165
Author(s) : Linz B , Windsor HM , McGraw JJ , Hansen LM , Gajewski JP , Tomsho LP , Hake CM , Solnick JV , Schuster SC , Marshall BJ
Ref : Nat Commun , 5 :4165 , 2014
Abstract :
PubMedSearch : Linz_2014_Nat.Commun_5_4165
PubMedID: 24924186
Gene_locus related to this paper: helpy-o25061

Title : Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a - Stolyar_2014_Genome.Announc_2_e01060
Author(s) : Stolyar S , Liu Z , Thiel V , Tomsho LP , Pinel N , Nelson WC , Lindemann SR , Romine MF , Haruta S , Schuster SC , Bryant DA , Fredrickson JK
Ref : Genome Announc , 2 : , 2014
Abstract :
PubMedSearch : Stolyar_2014_Genome.Announc_2_e01060
PubMedID: 24482507
Gene_locus related to this paper: 9chro-v5v7l5

Title : Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases - Meinhardt_2014_BMC.Genomics_15_164
Author(s) : Meinhardt LW , Costa GG , Thomazella DP , Teixeira PJ , Carazzolle MF , Schuster SC , Carlson JE , Guiltinan MJ , Mieczkowski P , Farmer A , Ramaraj T , Crozier J , Davis RE , Shao J , Melnick RL , Pereira GA , Bailey BA
Ref : BMC Genomics , 15 :164 , 2014
Abstract :
PubMedSearch : Meinhardt_2014_BMC.Genomics_15_164
PubMedID: 24571091
Gene_locus related to this paper: monro-v2wn76 , monro-v2xuz8 , monro-v2xl67 , monro-v2xnp4 , monro-v2wv67 , monro-v2wja9

Title : Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus - Saum_2013_Environ.Microbiol_15_1619
Author(s) : Saum SH , Pfeiffer F , Palm P , Rampp M , Schuster SC , Muller V , Oesterhelt D
Ref : Environ Microbiol , 15 :1619 , 2013
Abstract :
PubMedSearch : Saum_2013_Environ.Microbiol_15_1619
PubMedID: 22583374
Gene_locus related to this paper: halh3-i0jpy5 , halh3-i0jix5 , halh3-i0jqb3 , halh3-i0jhy8 , halh3-i0jln3 , halh3-i0jt96

Title : Helicobacter pylori genomic microevolution during naturally occurring transmission between adults - Linz_2013_PLoS.One_8_e82187
Author(s) : Linz B , Windsor HM , Gajewski JP , Hake CM , Drautz DI , Schuster SC , Marshall BJ
Ref : PLoS ONE , 8 :e82187 , 2013
Abstract :
PubMedSearch : Linz_2013_PLoS.One_8_e82187
PubMedID: 24340004
Gene_locus related to this paper: helpy-o25061

Title : The zebrafish reference genome sequence and its relationship to the human genome - Howe_2013_Nature_496_498
Author(s) : Howe K , Clark MD , Torroja CF , Torrance J , Berthelot C , Muffato M , Collins JE , Humphray S , McLaren K , Matthews L , Mclaren S , Sealy I , Caccamo M , Churcher C , Scott C , Barrett JC , Koch R , Rauch GJ , White S , Chow W , Kilian B , Quintais LT , Guerra-Assuncao JA , Zhou Y , Gu Y , Yen J , Vogel JH , Eyre T , Redmond S , Banerjee R , Chi J , Fu B , Langley E , Maguire SF , Laird GK , Lloyd D , Kenyon E , Donaldson S , Sehra H , Almeida-King J , Loveland J , Trevanion S , Jones M , Quail M , Willey D , Hunt A , Burton J , Sims S , McLay K , Plumb B , Davis J , Clee C , Oliver K , Clark R , Riddle C , Elliot D , Threadgold G , Harden G , Ware D , Begum S , Mortimore B , Kerry G , Heath P , Phillimore B , Tracey A , Corby N , Dunn M , Johnson C , Wood J , Clark S , Pelan S , Griffiths G , Smith M , Glithero R , Howden P , Barker N , Lloyd C , Stevens C , Harley J , Holt K , Panagiotidis G , Lovell J , Beasley H , Henderson C , Gordon D , Auger K , Wright D , Collins J , Raisen C , Dyer L , Leung K , Robertson L , Ambridge K , Leongamornlert D , McGuire S , Gilderthorp R , Griffiths C , Manthravadi D , Nichol S , Barker G , Whitehead S , Kay M , Brown J , Murnane C , Gray E , Humphries M , Sycamore N , Barker D , Saunders D , Wallis J , Babbage A , Hammond S , Mashreghi-Mohammadi M , Barr L , Martin S , Wray P , Ellington A , Matthews N , Ellwood M , Woodmansey R , Clark G , Cooper J , Tromans A , Grafham D , Skuce C , Pandian R , Andrews R , Harrison E , Kimberley A , Garnett J , Fosker N , Hall R , Garner P , Kelly D , Bird C , Palmer S , Gehring I , Berger A , Dooley CM , Ersan-Urun Z , Eser C , Geiger H , Geisler M , Karotki L , Kirn A , Konantz J , Konantz M , Oberlander M , Rudolph-Geiger S , Teucke M , Lanz C , Raddatz G , Osoegawa K , Zhu B , Rapp A , Widaa S , Langford C , Yang F , Schuster SC , Carter NP , Harrow J , Ning Z , Herrero J , Searle SM , Enright A , Geisler R , Plasterk RH , Lee C , Westerfield M , de Jong PJ , Zon LI , Postlethwait JH , Nusslein-Volhard C , Hubbard TJ , Roest Crollius H , Rogers J , Stemple DL
Ref : Nature , 496 :498 , 2013
Abstract :
PubMedSearch : Howe_2013_Nature_496_498
PubMedID: 23594743
Gene_locus related to this paper: danre-1neur , danre-ABHD10b , danre-a9jrf7 , danre-d2x2g3 , danre-e7ezq9 , danre-e7ff77 , danre-ndr3 , danre-nlgn4a , danre-q1mti5 , danre-q6nyz4 , danre-q6p2u2 , danre-q7t359 , danre-q08c93 , danre-A2BGU9 , danre-f1q676 , danre-e7f0z8 , danre-e7ez27 , danre-e7f2w1 , danre-f1qid7 , danre-a0a0g2kru2 , danre-f1qla7 , danre-a9jr90 , danre-e7f070 , danre-f172a , danre-e7fb35 , danre-a7mbu9 , danre-f1qtr2

Title : Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens - Park_2012_BMC.Genomics_13_545
Author(s) : Park J , Zhang Y , Buboltz AM , Zhang X , Schuster SC , Ahuja U , Liu M , Miller JF , Sebaihia M , Bentley SD , Parkhill J , Harvill ET
Ref : BMC Genomics , 13 :545 , 2012
Abstract :
PubMedSearch : Park_2012_BMC.Genomics_13_545
PubMedID: 23051057
Gene_locus related to this paper: borbr-BB0273

Title : Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria - Garcia_2012_Environ.Microbiol_14_177
Author(s) : Garcia Costas AM , Liu Z , Tomsho LP , Schuster SC , Ward DM , Bryant DA
Ref : Environ Microbiol , 14 :177 , 2012
Abstract :
PubMedSearch : Garcia_2012_Environ.Microbiol_14_177
PubMedID: 21951563
Gene_locus related to this paper: chltf-g2led8

Title : Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella - Engel_2011_PLoS.Genet_7_e1001296
Author(s) : Engel P , Salzburger W , Liesch M , Chang CC , Maruyama S , Lanz C , Calteau A , Lajus A , Medigue C , Schuster SC , Dehio C
Ref : PLoS Genet , 7 :e1001296 , 2011
Abstract :
PubMedSearch : Engel_2011_PLoS.Genet_7_e1001296
PubMedID: 21347280
Gene_locus related to this paper: 9rhiz-e6ylz4 , 9rhiz-e6yvr1 , barsr-e6yyv8 , brume-BMEI1594 , 9rhiz-e6ylv9 , 9rhiz-e6yr44

Title : A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T - Schwibbert_2011_Environ.Microbiol_13_1973
Author(s) : Schwibbert K , Marin-Sanguino A , Bagyan I , Heidrich G , Lentzen G , Seitz H , Rampp M , Schuster SC , Klenk HP , Pfeiffer F , Oesterhelt D , Kunte HJ
Ref : Environ Microbiol , 13 :1973 , 2011
Abstract :
PubMedSearch : Schwibbert_2011_Environ.Microbiol_13_1973
PubMedID: 20849449
Gene_locus related to this paper: haled-e1v3u4 , haled-e1vbl6 , haled-e1vcv8 , haled-e1v7i1 , haled-e1v840

Title : Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) - Miller_2011_Proc.Natl.Acad.Sci.U.S.A_108_12348
Author(s) : Miller W , Hayes VM , Ratan A , Petersen DC , Wittekindt NE , Miller J , Walenz B , Knight J , Qi J , Zhao F , Wang Q , Bedoya-Reina OC , Katiyar N , Tomsho LP , Kasson LM , Hardie RA , Woodbridge P , Tindall EA , Bertelsen MF , Dixon D , Pyecroft S , Helgen KM , Lesk AM , Pringle TH , Patterson N , Zhang Y , Kreiss A , Woods GM , Jones ME , Schuster SC
Ref : Proc Natl Acad Sci U S A , 108 :12348 , 2011
Abstract :
PubMedSearch : Miller_2011_Proc.Natl.Acad.Sci.U.S.A_108_12348
PubMedID: 21709235
Gene_locus related to this paper: sarha-g3vcc9 , sarha-g3vfe5 , sarha-g3vfr7 , sarha-g3vgt0 , sarha-g3vix0 , sarha-g3vqx7 , sarha-g3vrx3 , sarha-g3vsl6 , sarha-g3vvi8 , sarha-g3vyq6 , sarha-g3vz51 , sarha-g3vze3 , sarha-g3vzx8 , sarha-g3w1a9 , sarha-g3w685 , sarha-g3wfj3 , sarha-g3wg02 , sarha-g3wuz4 , sarha-g3x0l1 , sarha-g3whf8 , sarha-g3w6u4 , sarha-g3wrd7 , sarha-g3vun8 , sarha-g3vyu7 , sarha-g3wmk1 , sarha-g3w4n0 , sarha-g3x182 , sarha-g3wyt9 , sarha-g3vdz2 , sarha-g3vft8 , sarha-g3vtk1 , sarha-g3w6i3 , sarha-g3wy72 , sarha-g3vv12 , sarha-g3vv13 , sarha-g3vl97 , sarha-g3wzy4 , sarha-g3vcj1 , sarha-g3w1u8 , sarha-g3vik5 , sarha-g3wtu4 , sarha-g3wl42 , sarha-g3w041 , sarha-g3vyg5 , sarha-g3w5l6 , sarha-g3whf6 , sarha-g3wsi7 , sarha-a0a7n4np77

Title : Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria - Grote_2011_Stand.Genomic.Sci_5_269
Author(s) : Grote J , Bayindirli C , Bergauer K , Carpintero de Moraes P , Chen H , D'Ambrosio L , Edwards B , Fernandez-Gomez B , Hamisi M , Logares R , Nguyen D , Rii YM , Saeck E , Schutte C , Widner B , Church MJ , Steward GF , Karl DM , DeLong EF , Eppley JM , Schuster SC , Kyrpides NC , Rappe MS
Ref : Stand Genomic Sci , 5 :269 , 2011
Abstract :
PubMedSearch : Grote_2011_Stand.Genomic.Sci_5_269
PubMedID: 22675578
Gene_locus related to this paper: 9prot-g5zwk9 , 9prot-g5zy12

Title : Genome analysis of the meat starter culture bacterium Staphylococcus carnosus TM300 - Rosenstein_2009_Appl.Environ.Microbiol_75_811
Author(s) : Rosenstein R , Nerz C , Biswas L , Resch A , Raddatz G , Schuster SC , Gotz F
Ref : Applied Environmental Microbiology , 75 :811 , 2009
Abstract :
PubMedSearch : Rosenstein_2009_Appl.Environ.Microbiol_75_811
PubMedID: 19060169
Gene_locus related to this paper: staau-SAV2594 , stact-b9diq3 , stact-b9djk2 , stact-b9dkz8 , stact-b9dl51 , stact-b9dl58 , stact-b9dlj4 , stact-b9dn40 , stact-b9dpa0 , stact-b9dq82 , stact-b9dq91 , stact-b9djq4

Title : Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1 - Pfeiffer_2008_Genomics_91_335
Author(s) : Pfeiffer F , Schuster SC , Broicher A , Falb M , Palm P , Rodewald K , Ruepp A , Soppa J , Tittor J , Oesterhelt D
Ref : Genomics , 91 :335 , 2008
Abstract :
PubMedSearch : Pfeiffer_2008_Genomics_91_335
PubMedID: 18313895
Gene_locus related to this paper: hals3-b0r3a9 , halsp-VNG0675C , halsp-Vng6296c , halsp-YUXL

Title : A bacterial ice-binding protein from the Vostok ice core - Raymond_2008_Extremophiles_12_713
Author(s) : Raymond JA , Christner BC , Schuster SC
Ref : Extremophiles , 12 :713 , 2008
Abstract :
PubMedSearch : Raymond_2008_Extremophiles_12_713
PubMedID: 18622572
Gene_locus related to this paper: flab3-c6x1c8 , flab3-c6x3q3 , flab3-c6x5d6 , flab3-c6x5z7 , flab3-c6x182 , flab3-c6x576 , flab3-c6x660

Title : Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors - Saenz_2007_Nat.Genet_39_1469
Author(s) : Saenz HL , Engel P , Stoeckli MC , Lanz C , Raddatz G , Vayssier-Taussat M , Birtles R , Schuster SC , Dehio C
Ref : Nat Genet , 39 :1469 , 2007
Abstract :
PubMedSearch : Saenz_2007_Nat.Genet_39_1469
PubMedID: 18037886
Gene_locus related to this paper: barhe-q6g3j7 , bart1-a9ixf6 , bart1-a9iuh6

Title : Complete genome sequence of the myxobacterium Sorangium cellulosum - Schneiker_2007_Nat.Biotechnol_25_1281
Author(s) : Schneiker S , Perlova O , Kaiser O , Gerth K , Alici A , Altmeyer MO , Bartels D , Bekel T , Beyer S , Bode E , Bode HB , Bolten CJ , Choudhuri JV , Doss S , Elnakady YA , Frank B , Gaigalat L , Goesmann A , Groeger C , Gross F , Jelsbak L , Kalinowski J , Kegler C , Knauber T , Konietzny S , Kopp M , Krause L , Krug D , Linke B , Mahmud T , Martinez-Arias R , McHardy AC , Merai M , Meyer F , Mormann S , Munoz-Dorado J , Perez J , Pradella S , Rachid S , Raddatz G , Rosenau F , Ruckert C , Sasse F , Scharfe M , Schuster SC , Suen G , Treuner-Lange A , Velicer GJ , Vorholter FJ , Weissman KJ , Welch RD , Wenzel SC , Whitworth DE , Wilhelm S , Wittmann C , Blocker H , Puhler A , Muller R
Ref : Nat Biotechnol , 25 :1281 , 2007
Abstract :
PubMedSearch : Schneiker_2007_Nat.Biotechnol_25_1281
PubMedID: 17965706
Gene_locus related to this paper: sorc5-a9en84 , sorc5-a9enf0 , sorc5-a9eu04 , sorc5-a9eur8 , sorc5-a9ev31 , sorc5-a9ewe7 , sorc5-a9f2w6 , sorc5-a9fd82 , sorc5-a9fec8 , sorc5-a9fg26 , sorc5-a9fjh7 , sorc5-a9fpe7 , sorc5-a9fvz2 , sorc5-a9fw17 , sorc5-a9fw70 , sorc5-a9fwe6 , sorc5-a9fya1 , sorc5-a9g9n9 , sorc5-a9g651 , sorc5-a9gj93 , sorc5-a9glc5 , sorc5-a9glv5 , sorc5-a9gqy4 , sorc5-a9grj0 , sorc5-a9grk3 , sorc5-a9grp4 , sorc5-a9grt6 , sorc5-a9guw3 , sorc5-a9gy73 , sorce-q2n3s7 , sorc5-a9fsu5 , sorc5-a9gq11 , sorc5-a9ev65 , sorc5-a9fcj4 , sorc5-a9gut3 , sorc5-a9env4 , sorc5-a9fai0 , sorc5-a9g908 , sorc5-a9gmg6 , sorc5-ce1

Title : Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines - Eppinger_2006_PLoS.Genet_2_e120
Author(s) : Eppinger M , Baar C , Linz B , Raddatz G , Lanz C , Keller H , Morelli G , Gressmann H , Achtman M , Schuster SC
Ref : PLoS Genet , 2 :e120 , 2006
Abstract :
PubMedSearch : Eppinger_2006_PLoS.Genet_2_e120
PubMedID: 16789826
Gene_locus related to this paper: helah-q17ya9

Title : Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence - Thieme_2005_J.Bacteriol_187_7254
Author(s) : Thieme F , Koebnik R , Bekel T , Berger C , Boch J , Buttner D , Caldana C , Gaigalat L , Goesmann A , Kay S , Kirchner O , Lanz C , Linke B , McHardy AC , Meyer F , Mittenhuber G , Nies DH , Niesbach-Klosgen U , Patschkowski T , Ruckert C , Rupp O , Schneiker S , Schuster SC , Vorholter FJ , Weber E , Puhler A , Bonas U , Bartels D , Kaiser O
Ref : Journal of Bacteriology , 187 :7254 , 2005
Abstract :
PubMedSearch : Thieme_2005_J.Bacteriol_187_7254
PubMedID: 16237009
Gene_locus related to this paper: xanac-q8pmm6 , xanax-ACVB , xanax-BIOH , xanax-CATD , xanax-CPO , xanax-DHAA , xanax-ENTF2 , xanax-GAA , xanax-META , xanax-METX , xanax-PCAD , xanax-PHBC , xanax-PTRB , xanax-Q8PMQ8 , xanax-XAC0198 , xanax-XAC0262 , xanax-XAC0319 , xanax-XAC0372 , xanax-XAC0375 , xanax-XAC0515 , xanax-XAC0574 , xanax-XAC0591 , xanax-XAC0619 , xanax-XAC0628 , xanax-XAC0736 , xanax-XAC0753 , xanax-XAC0805 , xanax-XAC0874 , xanax-XAC1200 , xanax-XAC1213 , xanax-XAC1713 , xanax-XAC2532 , xanax-XAC2541 , xanax-XAC2907 , xanax-XAC2981 , xanax-XAC2990 , xanax-XAC3037 , xanax-XAC3053 , xanax-XAC3152 , xanax-XAC3770 , xanax-XAC3999 , xanax-XAC4046 , xanax-XAC4055 , xanax-XAC4106 , xanax-XAC4221 , xanax-XAC4316 , xanax-XYNB , xanc5-q3bqi2 , xanc5-q3bst4 , xanc5-q3btn4 , xanc5-q3bup9 , xanc5-q3byx0 , xanca-estA1 , xanca-impep , xanca-XCC1105 , xanca-XCC2285 , xanca-XCC2566 , xanca-XCC2722 , xanca-XCC3164 , xanca-XCC3555 , xanor-q5h3e8

Title : A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective - Rendulic_2004_Science_303_689
Author(s) : Rendulic S , Jagtap P , Rosinus A , Eppinger M , Baar C , Lanz C , Keller H , Lambert C , Evans KJ , Goesmann A , Meyer F , Sockett RE , Schuster SC
Ref : Science , 303 :689 , 2004
Abstract :
PubMedSearch : Rendulic_2004_Science_303_689
PubMedID: 14752164
Gene_locus related to this paper: bdeba-Bd2632 , bdeba-q6mgv6 , bdeba-q6mhk8 , bdeba-q6mhq7 , bdeba-q6mhr0 , bdeba-q6mhs4 , bdeba-q6mhs7 , bdeba-q6mi80 , bdeba-q6mif3 , bdeba-q6mii2 , bdeba-q6mik4 , bdeba-q6mim6 , bdeba-q6miz5 , bdeba-q6mk90 , bdeba-q6mlg1 , bdeba-q6mlj2 , bdeba-q6mmk6 , bdeba-q6mnq0 , bdeba-q6mnv9 , bdeba-q6mp35 , bdeba-q6mp81 , bdeba-q6mpe5 , bdeba-q6mpf6 , bdeba-q6mpi1 , bdeba-q6mpv3 , bdeba-q6mq23 , bdeba-q6mq81 , bdeba-q6mr18 , bdeba-q6mr19 , bdeba-q6mrp5 , bdeba-q6mh49

Title : Complete genome sequence and analysis of Wolinella succinogenes - Baar_2003_Proc.Natl.Acad.Sci.U.S.A_100_11690
Author(s) : Baar C , Eppinger M , Raddatz G , Simon J , Lanz C , Klimmek O , Nandakumar R , Gross R , Rosinus A , Keller H , Jagtap P , Linke B , Meyer F , Lederer H , Schuster SC
Ref : Proc Natl Acad Sci U S A , 100 :11690 , 2003
Abstract :
PubMedSearch : Baar_2003_Proc.Natl.Acad.Sci.U.S.A_100_11690
PubMedID: 14500908
Gene_locus related to this paper: wolsu-PYRB , wolsu-q7ma72 , wolsu-q7mrc4 , wolsu-q7mrb3

Title : Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics - Quaiser_2003_Mol.Microbiol_50_563
Author(s) : Quaiser A , Ochsenreiter T , Lanz C , Schuster SC , Treusch AH , Eck J , Schleper C
Ref : Molecular Microbiology , 50 :563 , 2003
Abstract :
PubMedSearch : Quaiser_2003_Mol.Microbiol_50_563
PubMedID: 14617179
Gene_locus related to this paper: 9bact-q7x356