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Gene_locus Report for: tetng-q4sbu0

Tetraodon nigroviridis (Spotted green pufferfish) (Chelonodon nigroviridis) Chromosome 19 SCAF14664, whole genome shotgun sequence

Comment
only n-term Pfam A DUF829 62 287


Relationship
Family|Duf_829
Block| X
Position in NCBI Life Tree|Tetraodon nigroviridis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Euteleosteomorpha: N E > Neoteleostei: N E > Eurypterygia: N E > Ctenosquamata: N E > Acanthomorphata: N E > Euacanthomorphacea: N E > Percomorphaceae: N E > Eupercaria: N E > Tetraodontiformes: N E > Tetraodontoidei: N E > Tetradontoidea: N E > Tetraodontidae: N E > Tetraodon: N E > Tetraodon nigroviridis: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : CAAE01014664
1 UniProt : Q4SBU0
1 UniProt : Q4SBU0
1 Interpro : Q4SBU0
1 Prodom : Q4SBU0
1 Pfam : Q4SBU0
1 PIRSF : Q4SBU0
1 SUPERFAM : Q4SBU0
Sequence
Graphical view for this peptide sequence: tetng-q4sbu0
Colored MSA for Duf_829 (raw)
RPLLLFFSWLGAQPGPVSKYRDLYLTRGMDVLVIQSSVMHFLWPRWGLSY
GLEVLRLLEEPQFSGRAVLVHAASIGGYTFTQVLIHIAQGRKEHAGLAQR
VIGHIYDSLVFGTLEHMAIGLGKTLVPRFQGFVKNAALLYFWLFKTQTAD
FYDSSVLVFHNSPILAPALFFFSENDALCDLAVAEKCIEHWRKRGMSVES
RKWKESIHAAHMRCHPEDYCSTLEKFLNSLG
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

RPLLLFFSWLGAQPGPVSKYRDLYLTRGMDVLVIQSSVMHFLWPRWGLSY
GLEVLRLLEEPQFSGRAVLVHAASIGGYTFTQVLIHIAQGRKEHAGLAQR
VIGHIYDSLVFGTLEHMAIGLGKTLVPRFQGFVKNAALLYFWLFKTQTAD
FYDSSVLVFHNSPILAPALFFFSENDALCDLAVAEKCIEHWRKRGMSVES
RKWKESIHAAHMRCHPEDYCSTLEKFLNSLG


Reference
    Title: Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
    Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C and Roest Crollius H <51 more author(s)>
    Ref: Nature, 431:946, 2004 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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